View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4349_high_3 (Length: 325)
Name: NF4349_high_3
Description: NF4349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4349_high_3 |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 14 - 325
Target Start/End: Complemental strand, 2484301 - 2484004
Alignment:
| Q |
14 |
gaagaaaccaaagagagaaagacaatcaaagtgagaagtcaacataccaaaccaaatgaaccaaaccgaattcaaagtacaaccagaataaccaacctta |
113 |
Q |
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| T |
2484301 |
gaagaaaccaaagagagaaagacaatcaaagtgagaagtcaacataccaaacc--------------gaattcaaagtacaaccagaataaccaacctta |
2484216 |
T |
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| Q |
114 |
atcaaaccaccatttaccaaatcttcctcgacagccccatcaataatatcaatatcaattcattttgcattcgaactaaatatacaatttatcaccaaat |
213 |
Q |
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| T |
2484215 |
atcaaaccaccatttaccaaatcttccttgacagccccatcaataatatcaatatcaattcattttgcattcgaactaaatatacaatttatcaccaaat |
2484116 |
T |
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| Q |
214 |
tgcatcacaaccaccccaaacaaaccattctgagtggatcgcaatattttttcttattaccaaaccgcctctcaattaatccaataacttcaaatgcaat |
313 |
Q |
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|||||||||||||| |||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2484115 |
tgcatcacaaccacaccaaacaagcctttctgagtggatcgtaatattttttcttattaccaaaccgcctctcaattaatccaataacttcaaatgcaat |
2484016 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 325
Target Start/End: Original strand, 17927413 - 17927544
Alignment:
| Q |
195 |
atacaatttatcaccaaattgcatcacaaccaccccaaacaaaccattctgagtggatcgcaatatttt-ttcttattaccaaaccgcctctcaattaat |
293 |
Q |
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||||||||||||| ||||| ||| |||||| | ||||| |||| | |||||||||| | |||||| ||||||||||| | | |||||| ||||||| |
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| T |
17927413 |
atacaatttatcataaaatttcataacaaccgcaccaaataaacaaaattgagtggatctccctatttttttcttattaccgatctgcctcttaattaat |
17927512 |
T |
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| Q |
294 |
ccaataacttcaaatgcaattgtggtagcaaa |
325 |
Q |
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| T |
17927513 |
ccaataacttcaaacacaactatggtagcaaa |
17927544 |
T |
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