View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4351-Insertion-1 (Length: 444)
Name: NF4351-Insertion-1
Description: NF4351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4351-Insertion-1 |
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| [»] chr8 (8 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 8 - 444
Target Start/End: Complemental strand, 31656856 - 31656420
Alignment:
| Q |
8 |
acaggtacatcagcattgttgctatgcgctgacctgcatgcctagtactaaacgtatccaaaaagtagtcataatgaggttcatacttttgtccaacttc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31656856 |
acaggtacatcagcattgttgctatgcgctgacctgcatgcctagtactaaacgtatccaaaaagtagtcataatgaggttcatacttttgtccaacttc |
31656757 |
T |
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| Q |
108 |
ataatggagaacattaaagctttcgccatgctctgcatattgtgaaacacggctcaagtaatggttgttttaagtattgggtgaaaaataacatactatc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31656756 |
ataatggagaacattaaagctttcgccatgctctgcatattgtgaaacacggctcaagtaatggttgttttaagtattgggtgaaaaataacatactatc |
31656657 |
T |
|
| Q |
208 |
tcagcatcaaaagacaactgaaaacacttcgttgatacatggttgaatcaaaaagcactagcaggagcatcaagccttagtttcttgaacaaaggaaaaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31656656 |
tcagcatcaaaagacaactgaaaacacttcgttgatacatggttgaatcaaaaagcactagcaggagcatcaagccttagtttcttgaacaaaggaaaaa |
31656557 |
T |
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| Q |
308 |
acaaaaggcagaaagaacgtgttacgcacctacaggtataaaagtaaaatcagcgattcttttctcaatattgctcacaatttcatcacctcctttgtca |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
31656556 |
acaaaaggcagaaagaacgtgttacgcacctacaggtataaaagtaaaatcagcgattcttttctcaatattgctcacaatttcatcaccttctctgtca |
31656457 |
T |
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| Q |
408 |
agaaatgttccagagcttgttcgtatgctaaatacat |
444 |
Q |
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| T |
31656456 |
agaaatgttccagagcttgttcgtatgctaaatacat |
31656420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 8 - 440
Target Start/End: Complemental strand, 31630510 - 31630079
Alignment:
| Q |
8 |
acaggtacatcagcattgttgctatgcgctgacctgcatgcctagtactaaacgtatccaaaaagtagtcataatgaggttcatacttttgtccaacttc |
107 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| ||| | |||| || | |||| ||||||||| ||||||| |||||||||||||||||||| |
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| T |
31630510 |
acaggtacatcagcattgttgctatacgctgacctccattcacagtattataatcatccgcaaagtagtctaaatgaggatcatacttttgtccaacttc |
31630411 |
T |
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| Q |
108 |
ataatggagaacattaaagctttcgccatgctctgcatattgtgaaacacggctcaagtaatggttgttttaagtattgggtgaaaaataacatactatc |
207 |
Q |
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|||| |||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||| |||||| | ||||||||||||||||| | |
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| T |
31630410 |
ataacggagaacattaaagctttcgccgttctctgcataatgtgaaacacggctcaagtaatggttgttt-aagtatatgatgaaaaataacatactacc |
31630312 |
T |
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| Q |
208 |
tcagcatcaaaagacaactgaaaacacttcgttgatacatggttgaatcaaaaagcactagcaggagcatcaagccttagtttcttgaacaaaggaaaaa |
307 |
Q |
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|||||||||||||||||| |||||||||| ||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31630311 |
tcagcatcaaaagacaacagaaaacacttggttaatacatggttgagtcaaaaagcattagcaggagcatcaagccttagtttcttgaacaaaggaaaaa |
31630212 |
T |
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| Q |
308 |
acaaaaggcagaaagaacgtgttacgcacctacaggtataaaagtaaaatcagcgattcttttctcaatattgctcacaatttcatcacctcctttgtca |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
31630211 |
acaaaaggcagaaagaacgtgttacgcacctacaggtataaaagtaaaatcagcgattcttttctcaatattcctcacaatttcatcacctcctctgtca |
31630112 |
T |
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| Q |
408 |
agaaatgttccagagcttgttcgtatgctaaat |
440 |
Q |
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||||| ||||||||||||||||||| ||||||| |
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| T |
31630111 |
agaaaagttccagagcttgttcgtacgctaaat |
31630079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 8 - 177
Target Start/End: Complemental strand, 31652053 - 31651884
Alignment:
| Q |
8 |
acaggtacatcagcattgttgctatgcgctgacctgcatgcctagtactaaacgtatccaaaaagtagtcataatgaggttcatacttttgtccaacttc |
107 |
Q |
| |
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||||||||||||||||||||||||| |||||||| |||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31652053 |
acaggtacatcagcattgttgctatacgctgacccgcatatgtagtactaaaagtatccataaagtagtcataatgaggttcatacttttgtccaacttc |
31651954 |
T |
|
| Q |
108 |
ataatggagaacattaaagctttcgccatgctctgcatattgtgaaacacggctcaagtaatggttgttt |
177 |
Q |
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||||||||||||||||||| |||| ||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
31651953 |
ataatggagaacattaaagttttcaccatgctctgcatattgtgaaacacagttcaagtaatggttgttt |
31651884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 81 - 177
Target Start/End: Complemental strand, 31646448 - 31646352
Alignment:
| Q |
81 |
atgaggttcatacttttgtccaacttcataatggagaacattaaagctttcgccatgctctgcatattgtgaaacacggctcaagtaatggttgttt |
177 |
Q |
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||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||| || || |||||||||||| |
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| T |
31646448 |
atgaggttcgtacttttgtccaacttcataatggagaatattaacgctttcgccattctctgcatattgtgaaacatagccaaattaatggttgttt |
31646352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 334 - 431
Target Start/End: Complemental strand, 31637455 - 31637358
Alignment:
| Q |
334 |
cacctacaggtataaaagtaaaatcagcgattcttttctcaatattgctcacaatttcatcacctcctttgtcaagaaatgttccagagcttgttcgt |
431 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |||| ||||| ||||| |||| |||| |||| | ||| |||||||||||||||||| |
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| T |
31637455 |
cacctacaggtataaaagtaaaatcagcaattcttttctcgatatcgctcaaaattttatcatatcctctgtcgataaaagttccagagcttgttcgt |
31637358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 31637835 - 31637687
Alignment:
| Q |
8 |
acaggtacatcagcattgttgctatgcgctgacctgcatgcctagtactaaacgtatccaaaaagtagtcataatgaggttcatacttttgtccaacttc |
107 |
Q |
| |
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|||||||||||| |||||||||||| |||| ||| ||||| ||||| ||| | ||| |||||||||| |||| || ||||||||||||||||| |
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| T |
31637835 |
acaggtacatcaacattgttgctatacgctcacccccatgcttagtattaacctcatcttcaaagtagtcagtatgaaaatcgtacttttgtccaacttc |
31637736 |
T |
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| Q |
108 |
ataatggagaacattaaagctttcgccatgctctgcatattgtgaaaca |
156 |
Q |
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||||||||||| ||||| | ||||||||||||||||| || ||||||| |
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| T |
31637735 |
ataatggagaatattaacgtcttcgccatgctctgcatgttttgaaaca |
31637687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 331 - 427
Target Start/End: Complemental strand, 31646295 - 31646199
Alignment:
| Q |
331 |
acgcacctacaggtataaaagtaaaatcagcgattcttttctcaatattgctcacaatttcatcacctcctttgtcaagaaatgttccagagcttgt |
427 |
Q |
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||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| ||||| |||| |||| ||| | ||| |||||||||||||| |
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| T |
31646295 |
acgcacctacaggtataaaagtaaaatcagcaattctttgctcaatattcctcagaattttatcatgtcctctgttgataaaagttccagagcttgt |
31646199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 334 - 427
Target Start/End: Complemental strand, 31651751 - 31651658
Alignment:
| Q |
334 |
cacctacaggtataaaagtaaaatcagcgattcttttctcaatattgctcacaatttcatcacctcctttgtcaagaaatgttccagagcttgt |
427 |
Q |
| |
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|||||||||||||||||||||||||||| |||||| |||||||||| |||||||| ||||| |||| | | |||||| | |||||||||||| |
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| T |
31651751 |
cacctacaggtataaaagtaaaatcagcaattcttctctcaatattcttcacaattctatcacttcctctcttaagaaaagctccagagcttgt |
31651658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 9105015 - 9105159
Alignment:
| Q |
8 |
acaggtacatcagcattgttgctatgcgctgacctgcatgcctagtactaaacgtatccaaaaagtagtcataatgaggttcatacttttgtccaacttc |
107 |
Q |
| |
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||||||||||||| | ||||||||||||||||| ||| | | || |||| ||| | |||||||||||| ||||| |||||||||||||||||||| |
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| T |
9105015 |
acaggtacatcagtaccgttgctatgcgctgacccccattctttgtgttaaattcatcaagaaagtagtcatagtgaggctcatacttttgtccaacttc |
9105114 |
T |
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| Q |
108 |
ataatggagaacattaaagctttcgccatgctctgcatattgtga |
152 |
Q |
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|||||| ||||| | || | ||| || ||||||||||||||||| |
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| T |
9105115 |
ataatgtagaacttgaagtccttcaccgtgctctgcatattgtga |
9105159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 424
Target Start/End: Original strand, 9105454 - 9105543
Alignment:
| Q |
335 |
acctacaggtataaaagtaaaatcagcgattcttttctcaatattgctcacaatttcatcacctcctttgtcaagaaatgttccagagct |
424 |
Q |
| |
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||||||||| ||||||||||| || || ||| ||||||||||||| |||||||| | ||||| ||| || | ||||||||||||||||| |
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| T |
9105454 |
acctacaggaataaaagtaaagtcggcaatttttttctcaatattcctcacaatcttatcacgtcccctggccagaaatgttccagagct |
9105543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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