View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4351_high_1 (Length: 536)
Name: NF4351_high_1
Description: NF4351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4351_high_1 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 475; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 58 - 536
Target Start/End: Complemental strand, 38816652 - 38816174
Alignment:
| Q |
58 |
atagttatattcgtgaatcgtgatagtgttggagactgacatctgttggacactggacacacctttaatatgaagtctcggtgctagatatttatgggag |
157 |
Q |
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| T |
38816652 |
atagttatattcgtgaatcgtgatagtgttggagactgacatctgttggacactgcacacacctttaatatgaagtctcggtgctagatatttatgggag |
38816553 |
T |
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| Q |
158 |
atatttatttgtgaagtttctttctaaggctttcttgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaag |
257 |
Q |
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| T |
38816552 |
atatttatttgtgaagtttctttctaaggctttcttgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaag |
38816453 |
T |
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| Q |
258 |
atgaaggaggaatgcttgggtgggtgagaaagggacaaatggtatgctgttgtttaggtttaattaaaccttgttcttagggttttacattttgtctaga |
357 |
Q |
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| T |
38816452 |
atgaaggaggaatgcttgggtgggtgagaaagggacaaatggtatgctgttgtttaggtttaattaaaccttgttcttagggttttacattttgtctaga |
38816353 |
T |
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| Q |
358 |
ttttgcagttggctactttttgtggttacagttggtatacatcacggccttatgtaaattaaactgactttgtctgttagagaagggtatatagttgtat |
457 |
Q |
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| T |
38816352 |
ttttgcagttggctactttttgtggttacagttggtatacatcacggccttatgtaaattaaactgactttgtctgttagagaagggtatatagttgtat |
38816253 |
T |
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| Q |
458 |
gaggtttctttgggtaggtgagaaattgaggttcaaaggatacaatataccttttcttgcattttctttcactgagtta |
536 |
Q |
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| T |
38816252 |
gaggtttctttgggtaggtgagaaattgaggttcaaaggatacaatataccttttcttgcattttctttcactgagtta |
38816174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 193 - 342
Target Start/End: Complemental strand, 38821928 - 38821782
Alignment:
| Q |
193 |
tgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaagatgaaggaggaatgcttgggtgggtgagaaaggga |
292 |
Q |
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| T |
38821928 |
tgttgtgtgtccaggtgaagatttgagcgatcttgctgtggactattcggtgtgcccatctaaagaagaaggaggaaggcttgggtgggtgagaaaggga |
38821829 |
T |
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| Q |
293 |
caaatggtatgctgttgtttaggtttaattaaaccttgttcttagggttt |
342 |
Q |
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| T |
38821828 |
caaatggta---tgatgtttagatttgcttaaatcttgttcttagggttt |
38821782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 63
Target Start/End: Complemental strand, 38816932 - 38816901
Alignment:
| Q |
32 |
caacagagagtcgctgcaggttaaaaatagtt |
63 |
Q |
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| T |
38816932 |
caacagagagtcgctgcaggttaaaaatagtt |
38816901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 122
Target Start/End: Complemental strand, 35665597 - 35665559
Alignment:
| Q |
84 |
tgttggagactgacatctgttggacactggacacacctt |
122 |
Q |
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| T |
35665597 |
tgttggaaactgacatgtgttggacactggacacacctt |
35665559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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