View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4351_low_1 (Length: 466)
Name: NF4351_low_1
Description: NF4351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4351_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 17 - 448
Target Start/End: Complemental strand, 46766199 - 46765768
Alignment:
| Q |
17 |
aatattataaagaaaagcttgggacccccttttggggcagggtcatgtttgcttagggtcctgcacatagnnnnnnnnnnnnctatttgtatgttgtatt |
116 |
Q |
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| T |
46766199 |
aatattataaagaaaagcttgggacccc-ttttggggcagggtcatgtttgcttagggtcctgcacatagttttttgtttttctatttgtatgttgtatt |
46766101 |
T |
|
| Q |
117 |
tgaatgagcttatnnnnnnnnnnnnnn-gtacaaacactaagttgcttaatttccactatcttaaaatcatgattatgagagtctataagggatagaaaa |
215 |
Q |
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| T |
46766100 |
tgaatgagcttataaaaagaaaaaaaaagtacaaacactaagttgcttaatttccactatcttaaaatcatgattatgagagtctataagggatagaaaa |
46766001 |
T |
|
| Q |
216 |
ggtacttgaatatggatggacacgtctcctgttcaaccttcccttctttagaaaaagtttagttcagtatatccaccggaatatggcaaaagttcgtcca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46766000 |
ggtacttgaatatggatggacacgtctcctgttcaaccttcccttctttagaaaaagtttagttcagtatatccaccggaatatggcaaaagttcgtcca |
46765901 |
T |
|
| Q |
316 |
actcaattcttgactgagaacaactcatacttttcttcaattttccgtgaggtgactcaacctcagcccaaaatatgccataaacaggtcggtggtctga |
415 |
Q |
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| T |
46765900 |
actcaattcttgactgagaacaactcatacttttcttcaattttccgtgaggtgactcaacctcagcccaaaatatgccataaacaggtcggtggtctga |
46765801 |
T |
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| Q |
416 |
aaatcttgattcaccgcgaacataagacaattg |
448 |
Q |
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| T |
46765800 |
aaatcttgattcaccgcgaacataagacaattg |
46765768 |
T |
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Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 263 - 442
Target Start/End: Complemental strand, 1086291 - 1086112
Alignment:
| Q |
263 |
ttagaaaaagtttagttcagtatatccaccggaatatggcaaaagttcgtccaactcaattcttgactgagaacaactcatacttttcttcaattttccg |
362 |
Q |
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||||||||||||||| ||||| ||||| |||||||| |||||||| |||| | ||||| || ||||||| ||||||||||||||||||||||| |
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| T |
1086291 |
ttagaaaaagtttagctcagtgtatccgtgagaatatggtaaaagttcctccacttggattctggaacgagaacagctcatacttttcttcaattttcca |
1086192 |
T |
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| Q |
363 |
tgaggtgactcaacctcagcccaaaatatgccataaacaggtcggtggtctgaaaatcttgattcaccgcgaacataaga |
442 |
Q |
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|| |||||||||||| |||||||||| ||||||||| |||| ||||||||||||||| ||||| ||||| || ||||| |
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| T |
1086191 |
tggtttgactcaacctcggcccaaaataagccataaaccggtctgtggtctgaaaatctcgattctccgcgtacgtaaga |
1086112 |
T |
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