View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4352-Insertion-1 (Length: 1020)

Name: NF4352-Insertion-1
Description: NF4352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4352-Insertion-1
NF4352-Insertion-1
[»] chr2 (4 HSPs)
chr2 (171-891)||(4766298-4767017)
chr2 (847-891)||(33093366-33093410)
chr2 (847-891)||(34225771-34225815)
chr2 (801-835)||(1360130-1360164)
[»] scaffold0194 (1 HSPs)
scaffold0194 (847-891)||(8156-8200)
[»] chr4 (6 HSPs)
chr4 (847-891)||(6232147-6232191)
chr4 (847-891)||(21045151-21045195)
chr4 (847-891)||(50072276-50072320)
chr4 (792-835)||(44855184-44855227)
chr4 (801-835)||(56373491-56373525)
chr4 (850-891)||(45903518-45903559)
[»] chr7 (6 HSPs)
chr7 (800-891)||(40298801-40298890)
chr7 (850-891)||(42044090-42044131)
chr7 (847-891)||(18733452-18733496)
chr7 (847-891)||(22597229-22597273)
chr7 (847-891)||(30514972-30515016)
chr7 (800-833)||(27947410-27947443)
[»] chr3 (11 HSPs)
chr3 (793-834)||(47138173-47138214)
chr3 (847-891)||(83295-83339)
chr3 (847-891)||(790095-790139)
chr3 (847-891)||(13485915-13485959)
chr3 (847-891)||(26965609-26965653)
chr3 (847-891)||(27027732-27027776)
chr3 (847-891)||(43580474-43580518)
chr3 (847-891)||(46363121-46363165)
chr3 (801-835)||(38457417-38457451)
chr3 (850-891)||(25722571-25722612)
chr3 (798-835)||(42791503-42791540)
[»] chr1 (5 HSPs)
chr1 (798-835)||(15698917-15698954)
chr1 (847-891)||(11650056-11650100)
chr1 (847-891)||(24041111-24041155)
chr1 (850-891)||(40061007-40061048)
chr1 (850-891)||(50158417-50158458)
[»] chr8 (3 HSPs)
chr8 (847-891)||(1774170-1774214)
chr8 (847-891)||(36915365-36915409)
chr8 (850-891)||(16208951-16208992)
[»] chr6 (2 HSPs)
chr6 (847-891)||(32258720-32258764)
chr6 (800-834)||(29915493-29915527)
[»] chr5 (3 HSPs)
chr5 (847-891)||(27810345-27810389)
chr5 (847-891)||(31557445-31557489)
chr5 (847-891)||(36660426-36660470)


Alignment Details
Target: chr2 (Bit Score: 627; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 171 - 891
Target Start/End: Complemental strand, 4767017 - 4766298
Alignment:
Q  171 aatatcacaaatgagaaaagctacatcatgcccatttataggcatctactaactaataattaacatcaactaatagctaattaattataactctgataag 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4767017 aatatcacaaatgagaaaagctacatcatgcccatttataggcatctactaactaataattaacatcaactaatagctaattaattataactctgataag 4766918  T
Q  271 aagattgaaaatggaaagaaggaagaaggaaaattcgtgaattgcatcaaaggcctcaaataatttgaacgtagatttttctttttgcatttaccttaac 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4766917 aagattgaaaatggaaagaaggaagaaggaaaattcgtgaattgcatcaaaggcctcaaataatttgaacgtagatttttctttttgcatttaccttaac 4766818  T
Q  371 ttgaataacacaca--tagtattgtcctcgaaacaagtgggaaactctacgagcatgaaaagttcaaaccaacaacaggcattgggagtaattggtccaa 468  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4766817 ttgaataacacacacatagtattgtcctcgaaacaagtgggaaactctacgagcatgaaaagttgaaaccaacaacaggcattgggagtaattggtccaa 4766718  T
Q  469 aagcagtgaaaagttccaaatgattgggtttttgaacacttcattccggtcatacctacaagtctagccgtcaagaatgtgatgcacgcatcacttgctc 568  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4766717 aagcagtgaaaagtgccaaatgattgggtttttgaacacttcatcccggtcatacctacaagtctagccgtcaagaatgtgatgcacgcatcacttgctc 4766618  T
Q  569 tagtgggcgtttcgtatatagatggagtacaccttttgtcttttttaagtctgaactcacaagtgcattcattggataaaattgcaacctaactcataca 668  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  4766617 tagtgggcgtttcgtatatggatggagtacaccttttgtctttgttaagtctgaactcagaagtgcattcattggataaaattgcaccctaactcataca 4766518  T
Q  669 tgtcatcactcgaccaacttctttatccaattgacagcattacatttatttttaggttgtggagataaccgaataaaccaccaaaagattgattactctt 768  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4766517 tgtcatcactcgaccaacttctttatccaattgacagcattacatttattttttggttgtggagataaccgaataaaccaccaaaagattgattactctt 4766418  T
Q  769 taatatggttgcaagtttgatccaaaaactattactccatccatttcaaaatgagtgtcactttagcnnnnnnnnnnnttgtttcaaaattaatgacaat 868  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||            ||||||||||| |||| ||||    
T  4766417 taatatggttgcaagtttgatccaaaaactattactccatccgtttcaaaatgagtgtcactttagcaaaaaaatc---tgtttcaaaatgaatgtcaat 4766321  T
Q  869 ttacattttcaatacaactttaa 891  Q
    |||||||||||||||||||||||    
T  4766320 ttacattttcaatacaactttaa 4766298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 847 - 891
Target Start/End: Original strand, 33093366 - 33093410
Alignment:
Q  847 ttgtttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    |||||||||||| |||| || ||||||||||||||||||||||||    
T  33093366 ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 33093410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 847 - 891
Target Start/End: Original strand, 34225771 - 34225815
Alignment:
Q  847 ttgtttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    |||||||||||| |||| || ||||||||||||||||||||||||    
T  34225771 ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 34225815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 801 - 835
Target Start/End: Original strand, 1360130 - 1360164
Alignment:
Q  801 tactccatccatttcaaaatgagtgtcactttagc 835  Q
    |||||||||| ||||||||||||||||||||||||    
T  1360130 tactccatccgtttcaaaatgagtgtcactttagc 1360164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 847 - 891
Target Start/End: Original strand, 8156 - 8200
Alignment:
Q  847 ttgtttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    |||||||||||| |||| |||||||||||||||||||||||||||    
T  8156 ttgtttcaaaatgaatgtcaatttacattttcaatacaactttaa 8200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 847 - 891
Target Start/End: Complemental strand, 6232191 - 6232147
Alignment:
Q  847 ttgtttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    |||||||||||| |||| |||||||||||||||||||||||||||    
T  6232191 ttgtttcaaaataaatgtcaatttacattttcaatacaactttaa 6232147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 847 - 891
Target Start/End: Original strand, 21045151 - 21045195
Alignment:
Q  847 ttgtttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    |||||||||||| |||| || ||||||||||||||||||||||||    
T  21045151 ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 21045195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 847 - 891
Target Start/End: Original strand, 50072276 - 50072320
Alignment:
Q  847 ttgtttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    |||||||||||| |||| || ||||||||||||||||||||||||    
T  50072276 ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 50072320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 792 - 835
Target Start/End: Original strand, 44855184 - 44855227
Alignment:
Q  792 aaaaactattactccatccatttcaaaatgagtgtcactttagc 835  Q
    |||| |||||||||||||| ||||||||||||||||| ||||||    
T  44855184 aaaatctattactccatccgtttcaaaatgagtgtcattttagc 44855227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 801 - 835
Target Start/End: Original strand, 56373491 - 56373525
Alignment:
Q  801 tactccatccatttcaaaatgagtgtcactttagc 835  Q
    |||||||||| ||||||||||||||||||||||||    
T  56373491 tactccatccgtttcaaaatgagtgtcactttagc 56373525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 850 - 891
Target Start/End: Complemental strand, 45903559 - 45903518
Alignment:
Q  850 tttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    ||||||||| |||| || ||||||||||||||||||||||||    
T  45903559 tttcaaaatgaatgtcactttacattttcaatacaactttaa 45903518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 800 - 891
Target Start/End: Original strand, 40298801 - 40298890
Alignment:
Q  800 ttactccatccatttcaaaatgagtgtcactttagcnnnnnnnnnnnttgtttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    ||||||| ||| ||||||||||||||||||||||||           |||||||||||| |||| || ||||||||||||||||||||||||    
T  40298801 ttactccctccgtttcaaaatgagtgtcactttagccaaaaaaaa--ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 40298890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 850 - 891
Target Start/End: Complemental strand, 42044131 - 42044090
Alignment:
Q  850 tttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  42044131 tttcaaaattaatgtcactttacattttcaatacaactttaa 42044090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 847 - 891
Target Start/End: Original strand, 18733452 - 18733496
Alignment:
Q  847 ttgtttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    |||||||||||| |||| || ||||||||||||||||||||||||    
T  18733452 ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 18733496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 847 - 891
Target Start/End: Original strand, 22597229 - 22597273
Alignment:
Q  847 ttgtttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    |||||||||||| |||| || ||||||||||||||||||||||||    
T  22597229 ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 22597273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 847 - 891
Target Start/End: Original strand, 30514972 - 30515016
Alignment:
Q  847 ttgtttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    |||||||||||| |||| |||||||||||| ||||||||||||||    
T  30514972 ttgtttcaaaatgaatgtcaatttacatttccaatacaactttaa 30515016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 800 - 833
Target Start/End: Original strand, 27947410 - 27947443
Alignment:
Q  800 ttactccatccatttcaaaatgagtgtcacttta 833  Q
    ||||||||||| ||||||||||||||||||||||    
T  27947410 ttactccatccgtttcaaaatgagtgtcacttta 27947443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 793 - 834
Target Start/End: Complemental strand, 47138214 - 47138173
Alignment:
Q  793 aaaactattactccatccatttcaaaatgagtgtcactttag 834  Q
    |||| ||||||||||||| |||||||||||||||||||||||    
T  47138214 aaaaatattactccatccgtttcaaaatgagtgtcactttag 47138173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 847 - 891
Target Start/End: Original strand, 83295 - 83339
Alignment:
Q  847 ttgtttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    |||||||||||| |||| || ||||||||||||||||||||||||    
T  83295 ttgtttcaaaatgaatgtcattttacattttcaatacaactttaa 83339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 847 - 891
Target Start/End: Original strand, 790095 - 790139
Alignment:
Q  847 ttgtttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    ||||||||||||||||| || ||||||||| ||||||||||||||    
T  790095 ttgtttcaaaattaatgtcactttacatttccaatacaactttaa 790139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 847 - 891
Target Start/End: Complemental strand, 13485959 - 13485915
Alignment:
Q  847 ttgtttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    |||||||||||| |||| |||||||||||| ||||||||||||||    
T  13485959 ttgtttcaaaatgaatgtcaatttacatttccaatacaactttaa 13485915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 847 - 891
Target Start/End: Complemental strand, 26965653 - 26965609
Alignment:
Q  847 ttgtttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    |||||||||||| |||| || ||||||||||||||||||||||||    
T  26965653 ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 26965609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 847 - 891
Target Start/End: Original strand, 27027732 - 27027776
Alignment:
Q  847 ttgtttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    ||||||||||||||||| |||||||||||| |||||||| |||||    
T  27027732 ttgtttcaaaattaatgtcaatttacatttccaatacaaatttaa 27027776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 847 - 891
Target Start/End: Original strand, 43580474 - 43580518
Alignment:
Q  847 ttgtttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    |||||||||||| |||| || ||||||||||||||||||||||||    
T  43580474 ttgtttcaaaataaatgtcactttacattttcaatacaactttaa 43580518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 847 - 891
Target Start/End: Complemental strand, 46363165 - 46363121
Alignment:
Q  847 ttgtttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    |||||||||||| |||| || ||||||||||||||||||||||||    
T  46363165 ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 46363121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 801 - 835
Target Start/End: Original strand, 38457417 - 38457451
Alignment:
Q  801 tactccatccatttcaaaatgagtgtcactttagc 835  Q
    ||||||||| |||||||||||||||||||||||||    
T  38457417 tactccatcaatttcaaaatgagtgtcactttagc 38457451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 850 - 891
Target Start/End: Complemental strand, 25722612 - 25722571
Alignment:
Q  850 tttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    ||||||||| |||| || ||||||||||||||||||||||||    
T  25722612 tttcaaaatgaatgtcactttacattttcaatacaactttaa 25722571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 798 - 835
Target Start/End: Complemental strand, 42791540 - 42791503
Alignment:
Q  798 tattactccatccatttcaaaatgagtgtcactttagc 835  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  42791540 tattactccatccgtttcaaaatgagtgtcattttagc 42791503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 798 - 835
Target Start/End: Complemental strand, 15698954 - 15698917
Alignment:
Q  798 tattactccatccatttcaaaatgagtgtcactttagc 835  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  15698954 tattactccatccgtttcaaaatgagtgtcactttagc 15698917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 847 - 891
Target Start/End: Original strand, 11650056 - 11650100
Alignment:
Q  847 ttgtttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    |||||||||||| |||| || ||||||||||||||||||||||||    
T  11650056 ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 11650100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 847 - 891
Target Start/End: Complemental strand, 24041155 - 24041111
Alignment:
Q  847 ttgtttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    |||||||||||| |||| || ||||||||||||||||||||||||    
T  24041155 ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 24041111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 850 - 891
Target Start/End: Complemental strand, 40061048 - 40061007
Alignment:
Q  850 tttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    ||||||||| |||| || ||||||||||||||||||||||||    
T  40061048 tttcaaaatgaatgtcactttacattttcaatacaactttaa 40061007  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 850 - 891
Target Start/End: Complemental strand, 50158458 - 50158417
Alignment:
Q  850 tttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    ||||||||| |||| || ||||||||||||||||||||||||    
T  50158458 tttcaaaatgaatgtcactttacattttcaatacaactttaa 50158417  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 847 - 891
Target Start/End: Complemental strand, 1774214 - 1774170
Alignment:
Q  847 ttgtttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    |||||| ||||| |||| |||||||||||||||||||||||||||    
T  1774214 ttgttttaaaatgaatgtcaatttacattttcaatacaactttaa 1774170  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 847 - 891
Target Start/End: Original strand, 36915365 - 36915409
Alignment:
Q  847 ttgtttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    |||||||||||| |||| || ||||||||||||||||||||||||    
T  36915365 ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 36915409  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 850 - 891
Target Start/End: Original strand, 16208951 - 16208992
Alignment:
Q  850 tttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    ||||||||| |||| || ||||||||||||||||||||||||    
T  16208951 tttcaaaatgaatgtcactttacattttcaatacaactttaa 16208992  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 847 - 891
Target Start/End: Original strand, 32258720 - 32258764
Alignment:
Q  847 ttgtttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    |||||||||||| |||| || ||||||||||||||||||||||||    
T  32258720 ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 32258764  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 800 - 834
Target Start/End: Original strand, 29915493 - 29915527
Alignment:
Q  800 ttactccatccatttcaaaatgagtgtcactttag 834  Q
    ||||||||||| |||||||||||||||||||||||    
T  29915493 ttactccatccgtttcaaaatgagtgtcactttag 29915527  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 847 - 891
Target Start/End: Original strand, 27810345 - 27810389
Alignment:
Q  847 ttgtttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    |||||||||||| |||| || ||||||||||||||||||||||||    
T  27810345 ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 27810389  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 847 - 891
Target Start/End: Complemental strand, 31557489 - 31557445
Alignment:
Q  847 ttgtttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    |||||||||||| |||| || ||||||||||||||||||||||||    
T  31557489 ttgtttcaaaatgaatgtcattttacattttcaatacaactttaa 31557445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 847 - 891
Target Start/End: Original strand, 36660426 - 36660470
Alignment:
Q  847 ttgtttcaaaattaatgacaatttacattttcaatacaactttaa 891  Q
    |||||||||||| |||| || ||||||||||||||||||||||||    
T  36660426 ttgtttcaaaatgaatgtcactttacattttcaatacaactttaa 36660470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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