View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4352-Insertion-6 (Length: 208)
Name: NF4352-Insertion-6
Description: NF4352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4352-Insertion-6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 208
Target Start/End: Original strand, 29207017 - 29207217
Alignment:
| Q |
8 |
cttacttcatagttgaacattgcacgtttgacagctctttcttgtgtgtggagtttgaattcttgtggttttgtattttcttttgtaggagattttcttg |
107 |
Q |
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| T |
29207017 |
cttacttcatagttgaacattgcacgtttgacagctctttcttgtgtgtggagtttgaattcttgtggttttgtattttcttttgtaggagattttcttg |
29207116 |
T |
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| Q |
108 |
aaccctaaacaaacacaaaaatgattcaccgaaatgtgaaaaatgaaatggacatacaaagtagtaatacatgttagtgtaccatgtaattccttacctt |
207 |
Q |
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| T |
29207117 |
aaccctaaacaaacacaaaaatgattcaccgaaatgtgaaaaatgaaatggacatactaagtagtaatacatgttagtgtaccatgtaattccttacctt |
29207216 |
T |
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| Q |
208 |
a |
208 |
Q |
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| T |
29207217 |
a |
29207217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 38379170 - 38379049
Alignment:
| Q |
8 |
cttacttcatagttgaacattgcacgtttgacagctctttcttgtgtgtggagtttgaattcttgtggttttgtattttcttttgtaggagattttcttg |
107 |
Q |
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|||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| |||| | ||||||||||| |||||||||||||||| |
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| T |
38379170 |
cttacttcgtagttgaatattgcacgtttgactgctctttcttgagtgtggagtttgaattcttttggtctagtattttctttggtaggagattttcttg |
38379071 |
T |
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| Q |
108 |
aaccctaaacaaacacaaaaat |
129 |
Q |
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| T |
38379070 |
aagcctgaacaaacagaaaaat |
38379049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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