View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4353-Insertion-10 (Length: 347)
Name: NF4353-Insertion-10
Description: NF4353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4353-Insertion-10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 347
Target Start/End: Original strand, 1218442 - 1218777
Alignment:
| Q |
8 |
gttagaatttagaatagcaaccatgattcaaaggtaaggttacatatatgaaaaatgcaaacaaagaacacgcgatatttgatcacaagttcggccaatt |
107 |
Q |
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| T |
1218442 |
gttagaatttagaatagcaaccatgattcaaaggtaaggttacatatatgaaaaatgcaaacaaagaacacgcgatatttgatcacaggttcggccaatt |
1218541 |
T |
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| Q |
108 |
atgtctgcatctcgtactgcgaagcggttgtagtaccttttctcgccagctcgagtgacctgcccacttattagtaaactatgagtgatagccaaaagtc |
207 |
Q |
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| T |
1218542 |
atgtctgcatctcgtactgcaaagcggttgtagtacattttctcgccagctcgagtgacctgcccacttattagtaaactatgagtgatagccaaaagtc |
1218641 |
T |
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| Q |
208 |
ttaaaatacgatattgacttgttttgacaaagcattttgactatatgtttatttagattgcattgtgttttgtgtaacagattgtgttgcaaatttcttc |
307 |
Q |
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| T |
1218642 |
ttaaaagacgatattgacttgttttgacaaagcattttgactatatgtttatttagattgcattgtgttttgtgtaacagattgtgttgcaaat---ttc |
1218738 |
T |
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| Q |
308 |
cattttaaatctataatattgtatcagttcataggtgcta |
347 |
Q |
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| T |
1218739 |
catttt-aatctataatgttgtatcagttcataagtgcta |
1218777 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 4068407 - 4068451
Alignment:
| Q |
158 |
tcgagtgacctgcccacttattagtaaactatgagtgatagccaa |
202 |
Q |
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| T |
4068407 |
tcgagtgacctgcccactttttagtaaactacgagtcatatccaa |
4068451 |
T |
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