View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4353-Insertion-12 (Length: 306)
Name: NF4353-Insertion-12
Description: NF4353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4353-Insertion-12 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 38 - 306
Target Start/End: Complemental strand, 37020424 - 37020156
Alignment:
| Q |
38 |
acaagctgattagcttggggatcataagtacacagtggctgcgctgtaacagcctcgacattactctcatcatgcagctcaaacactgcccgtcgaagag |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37020424 |
acaagctgattagcttggggatcataagtacacagtggctgcgctgtaacagcctcgacattactctcatcatgcagctcaaacactgcccgtcgaagag |
37020325 |
T |
|
| Q |
138 |
caaacacagtagccttattcttagcaaagttacaacatctgtcatcaccgccatgtcgagcaacagccaatttcttaatgaaagcaagtgtttcggcggg |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37020324 |
caaacacagtagccttattcttagcaaagttacaacatctgtcatcaccgccatgtcgagcaacagccaatttcttaatgaaagcaagtgtttcggcggg |
37020225 |
T |
|
| Q |
238 |
tctaaaaccctttttcgcattcctaatctgagctacagaatagattccagaatcataatctggcacatg |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37020224 |
tctaaaaccctttttcgcattcctaatctgagctacagaatagattccagaatcataatctggcacatg |
37020156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 88 - 279
Target Start/End: Complemental strand, 37020620 - 37020429
Alignment:
| Q |
88 |
agcctcgacattactctcatcatgcagctcaaacactgcccgtcgaagagcaaacacagtagccttattcttagcaaagttacaacatctgtcatcaccg |
187 |
Q |
| |
|
|||||| |||| | ||||| ||||||| | |||||||| |||||| |||||||||| ||||||||| ||| ||||| |||||| |||| |||| | |
|
|
| T |
37020620 |
agcctcaacataagtctcaccatgcagattaaacactgtttgtcgaaaagcaaacacaacagccttattattaacaaagctacaacttctgcaatcaaca |
37020521 |
T |
|
| Q |
188 |
ccatgtcgagcaacagccaatttcttaatgaaagcaagtgtttcggcgggtctaaaaccctttttcgcattcctaatctgagctacagaata |
279 |
Q |
| |
|
| ||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||| | |||||| ||||||| |
|
|
| T |
37020520 |
caatgtctagcaacggccaatttcttaatgaaagcaagtgcttcggcgggtctaaaaccatttttttcattcctggtatgagcttcagaata |
37020429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University