View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4353-Insertion-13 (Length: 309)
Name: NF4353-Insertion-13
Description: NF4353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4353-Insertion-13 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 44739470 - 44739690
Alignment:
| Q |
8 |
gagggacccctataatacctatccaaagagtggaataatagttactgtatttgaacatcaatatctcagtaccatccatcaagtgacaaacaaatagata |
107 |
Q |
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| T |
44739470 |
gagggacccctataatacctatccaaagagtggaataatagttactgtatttgaacatcaatatctcagtaccatccatcaagtgacaaacaaatagata |
44739569 |
T |
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| Q |
108 |
aacttttcaacttcatcatttaagatgttgttataggacagacatacgatatgacatttcttattgactaaatcccaatagtcaaaggatatattgaaa- |
206 |
Q |
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| T |
44739570 |
aacttttcaacttcatcatttaagatgttgttataggacagacatacgatatgacatttcttattgactaaatcccaatagtcaaaggatatattgaaaa |
44739669 |
T |
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| Q |
207 |
-gaaatgctcaaatacatgca |
226 |
Q |
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| T |
44739670 |
gaaaatgctcaaatacatgca |
44739690 |
T |
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Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 25 - 206
Target Start/End: Original strand, 53235421 - 53235592
Alignment:
| Q |
25 |
cctatccaaagagtggaataatagttactgtatttgaacatcaatatctcagtaccatccatcaagtgacaaacaa--------atagataaacttttca |
116 |
Q |
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| T |
53235421 |
cctatccaaagagtgaaataatggttactgtatttgaacatcaatatctcagtaccatacatcaagtgacaaacaaatagatagatagataagcttttca |
53235520 |
T |
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| Q |
117 |
acttcatcatttaagatgttgttataggacagacatacgatatgacatttcttattgactaaatcccaatagtcaaaggatatattgaaa |
206 |
Q |
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| T |
53235521 |
acttcatcatttaagatgttgttata------------------acatttcttattgactaaatcccaatagtcaagggatatattgaaa |
53235592 |
T |
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