View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4353-Insertion-16 (Length: 138)
Name: NF4353-Insertion-16
Description: NF4353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4353-Insertion-16 |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 6e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 6e-63
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 20599984 - 20599855
Alignment:
| Q |
8 |
atagccatacctgaaacgtgatccacacgaacaaaccctgattcaagaataaaagcatgaacagcaaataccagtagtttgaaatcgctaatgtcgtcgc |
107 |
Q |
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| T |
20599984 |
atagccatacctgaaacgtgatccacacgaacaaaccctgattcaagaataaaagcatgaacagcaaataccagtagtttgaaatcgctaacgtcgtcgc |
20599885 |
T |
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| Q |
108 |
caagcgcttctctaagcacccttttcacaa |
137 |
Q |
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| T |
20599884 |
caagtgcttctctaagcacccttttcacaa |
20599855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 3e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 6133792 - 6133675
Alignment:
| Q |
20 |
gaaacgtgatccacacgaacaaaccctgattcaagaataaaagcatgaacagcaaataccagtagtttgaaatcgctaatgtcgtcgccaagcgcttctc |
119 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| || ||||||||||||| |
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| T |
6133792 |
gaaacgcgatccacacgaataaaccctgattcaagaataaaagcatgaactgcaaataccagtagtttgaaatcgctaacgtcatcaccaagcgcttctc |
6133693 |
T |
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| Q |
120 |
taagcacccttttcacaa |
137 |
Q |
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|||||||||||||||||| |
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| T |
6133692 |
taagcacccttttcacaa |
6133675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 47944930 - 47945036
Alignment:
| Q |
11 |
gccatacctgaaacgtgatccacacgaacaaaccctgattcaagaataaaagcatgaacagcaaataccagtagtttgaaatcgctaatgtcgtcgccaa |
110 |
Q |
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| T |
47944930 |
gccatacccgaaacctcgtccacacgaacaaacccagattcaagaataacagcatgaaccgcaaacaccaacagcttcaaatcactaacatcatcaccaa |
47945029 |
T |
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| Q |
111 |
gcgcttc |
117 |
Q |
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||||||| |
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| T |
47945030 |
gcgcttc |
47945036 |
T |
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