View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4353-Insertion-6 (Length: 673)
Name: NF4353-Insertion-6
Description: NF4353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4353-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 8 - 411
Target Start/End: Original strand, 41182832 - 41183235
Alignment:
| Q |
8 |
gattgacccttaacaacttctggattataaacactagtagttcctccgactccatagtaaggaccacccttactattaagaaacacattagcatactgta |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41182832 |
gattgacccttaacaacttctggattataaacactagtagttcctccgactccatagtaaggaccacccttactattaagaaacacattagcatactgta |
41182931 |
T |
|
| Q |
108 |
aattcattagtttcacgtattactaaacaaagttatatatttttaataggaatatactaaataaattgaaaatttagttaatcatgtgagaaacattaca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41182932 |
aattcattagtttcacgtattactaaacaaagttatatatttttaataggaatatactaaataaattgaaaatttagttaatcatgtgagaaacattaca |
41183031 |
T |
|
| Q |
208 |
tgactgatagcgccgccattttcatttaggctatgttcattgaataaagattttcctcgaataagatcatctttgattatcctccgaatagggacagttc |
307 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41183032 |
tgactgatagcgccgtcattttcatttaggctatgttcattgaataaagattttcctcgaatgagatcatctttgattatcctccgaatagggacagttc |
41183131 |
T |
|
| Q |
308 |
cttttggacatctaaccttctcaaacccgtatatatatttagttggtgaagtcgctgcacttgtttcattaatttttctttcaaaagttggttttctcta |
407 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41183132 |
cttttggacatctaaccttctcaaacccgtatgcatgtttagttggtgaagtcgctgcacttgtttcattaatttttctttcaaaagttggttttctcta |
41183231 |
T |
|
| Q |
408 |
caac |
411 |
Q |
| |
|
|||| |
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|
| T |
41183232 |
caac |
41183235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 497 - 673
Target Start/End: Original strand, 41183321 - 41183497
Alignment:
| Q |
497 |
acctgtaatttatgattttttagtaaaggatgatcaaaagctggttgtttgtgaatatcaacacaatcaactatataccctgactttgtctatagaaacc |
596 |
Q |
| |
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|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41183321 |
acctgtaacttatgattttttagtaaaagatgatcaaaagctggttgtttgtgaatatcaacacaatcaactatataccctgactttgtctatagaaacc |
41183420 |
T |
|
| Q |
597 |
acaaaaaatattacaaagggtgatgacattaattaaaacacgaataaaacaactgtatgtgtaaatttatacctgga |
673 |
Q |
| |
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||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41183421 |
acaaaaattattaaaaagggtgatgaaattaattaaaacacgaataaaacaactgtatgtgtaaatttatacctgga |
41183497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 603
Target Start/End: Original strand, 40297497 - 40297603
Alignment:
| Q |
497 |
acctgtaatttatgattttttagtaaaggatgatcaaaagctggttgtttgtgaatatcaacacaatcaactatataccctgactttgtctatagaaacc |
596 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| || ||||||| || |||| |||||||| ||||||||||| || || | ||||||||| ||||| |
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| T |
40297497 |
acctgtaatttatgattctttaataaaggatggtcgaaagctgcctgcttgtcaatatcaatgcaatcaactatgtatccgaattttgtctattaaaacc |
40297596 |
T |
|
| Q |
597 |
acaaaaa |
603 |
Q |
| |
|
|| |||| |
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|
| T |
40297597 |
accaaaa |
40297603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 495 - 603
Target Start/End: Complemental strand, 50198976 - 50198868
Alignment:
| Q |
495 |
ttacctgtaatttatgattttttagtaaaggatgatcaaaagctggttgtttgtgaatatcaacacaatcaactatataccctgactttgtctatagaaa |
594 |
Q |
| |
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||||||| || ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | | || || |||||||||||||| || |
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| T |
50198976 |
ttacctgcaacttatgattttttaataaaggatgatcaaaagctggttgtttgtaaatatcaacacaatcaattgtgtatccagactttgtctatagtaa |
50198877 |
T |
|
| Q |
595 |
ccacaaaaa |
603 |
Q |
| |
|
|||| |||| |
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|
| T |
50198876 |
ccaccaaaa |
50198868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 506 - 570
Target Start/End: Original strand, 26005252 - 26005316
Alignment:
| Q |
506 |
ttatgattttttagtaaaggatgatcaaaagctggttgtttgtgaatatcaacacaatcaactat |
570 |
Q |
| |
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|||||||| |||| |||||||||||||||||| |||||||||||| |||| |||||||||||| |
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|
| T |
26005252 |
ttatgattctttaataaaggatgatcaaaagccaattgtttgtgaatgtcaatacaatcaactat |
26005316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 567
Target Start/End: Complemental strand, 15228913 - 15228843
Alignment:
| Q |
497 |
acctgtaatttatgattttttagtaaaggatgatcaaaagctggttgtttgtgaatatcaacacaatcaac |
567 |
Q |
| |
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||||||| |||||||| |||||||||||||| ||||||||| |||| || | |||||||| ||||||||| |
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| T |
15228913 |
acctgtatcttatgattctttagtaaaggatggtcaaaagctagttgcttattaatatcaatacaatcaac |
15228843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 497 - 564
Target Start/End: Complemental strand, 15246944 - 15246877
Alignment:
| Q |
497 |
acctgtaatttatgattttttagtaaaggatgatcaaaagctggttgtttgtgaatatcaacacaatc |
564 |
Q |
| |
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||||||| |||||||| |||||||||||||||||||||||| ||| || | |||||||| |||||| |
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| T |
15246944 |
acctgtatcttatgattctttagtaaaggatgatcaaaagctaattgcttattaatatcaatacaatc |
15246877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 514 - 550
Target Start/End: Original strand, 30919856 - 30919892
Alignment:
| Q |
514 |
ttttagtaaaggatgatcaaaagctggttgtttgtga |
550 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||| |
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| T |
30919856 |
ttttaataaaggatgatcaaaagctggttgtttgtga |
30919892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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