View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4353-Insertion-8 (Length: 366)
Name: NF4353-Insertion-8
Description: NF4353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4353-Insertion-8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 298
Target Start/End: Original strand, 53278993 - 53279272
Alignment:
| Q |
19 |
atataaattagttttggttttataatggcaggttataaagtcgttgacaaaggatgttgtggcacaggagcagtagaggtagcagtgttatgcaaccaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53278993 |
atataaattagttttggttttataatggcaggttataaagtcgttgacaaaggatgttgtggcacaggagcagtagaggtagcagtgttatgcaaccaat |
53279092 |
T |
|
| Q |
119 |
ttgctacccaatgtgaagatgttagggactacgttttctgggacagttttcatccctcggagagtgtttacagcaagctcttaaatcctcttcttcgaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53279093 |
ttgctacccaatgtgaagatgttagggactacgttttctgggacagttttcatccctcagagagtgtttacagcaagctcttaaatcctcttcttcgaaa |
53279192 |
T |
|
| Q |
219 |
atatatacaccagttcttctagtttccttttggttagttttatataaacaacttaattacatgtatgacttaccgatttc |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
53279193 |
atatatacaccagttcttctagtttccttttggttagttttatataaacaacttaattacatgtaggacttaccgatttc |
53279272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 299 - 366
Target Start/End: Original strand, 53279312 - 53279379
Alignment:
| Q |
299 |
aagtgtatggttgatgaggtacattaaataaattattttgtgttttaaggggacatcatctacatcga |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
53279312 |
aagtgtatggttgatgaggtacattaaataaattattttgtgttttaaggggatatcatctacatcga |
53279379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University