View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4354-Insertion-12 (Length: 288)
Name: NF4354-Insertion-12
Description: NF4354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4354-Insertion-12 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 6e-77; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 139 - 288
Target Start/End: Complemental strand, 5339624 - 5339475
Alignment:
| Q |
139 |
atgggtagctattcatctgaacatatttggtgatgttgatgttgatgatatggatttcgtgtacgttgatatttcgaatttgccattgttgaacactgat |
238 |
Q |
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| T |
5339624 |
atgggtagctattcatctgaacatatttggtgatgttgatgttgatgatatggaattcgtgtacgttgatatttcgaatttgccattgttgaacactgat |
5339525 |
T |
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| Q |
239 |
cttgaggaagaagggacttttcctcttgaagttgaagattttcgtgatta |
288 |
Q |
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| T |
5339524 |
cttgaggaagaagggacttttcctcttgaagttgaagattttcgtgatta |
5339475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 5339736 - 5339644
Alignment:
| Q |
7 |
actaacattttattatatagtacattttattgtctagtaagtgtatgacaaatggtaaaatactgtagaaacatttaatgtgttattgaatttaagggtt |
106 |
Q |
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| T |
5339736 |
actaacattttattatatagtacattttattgtctagtaagtgtagcacaaatggt------------aaacatttaatgtgttattgaatttaaaggtt |
5339649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 275
Target Start/End: Complemental strand, 5325620 - 5325544
Alignment:
| Q |
199 |
gtacgttgatatttcgaatttgccattgttgaacactgatcttgaggaagaagggacttttcctcttgaagttgaag |
275 |
Q |
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| T |
5325620 |
gtacattgatctttcaaacttgccaatgttgaacactgatcttgagaaagaaggaacttttcctgctgaagttgaag |
5325544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 5343723 - 5343790
Alignment:
| Q |
207 |
atatttcgaatttgccattgttgaacactgatcttgaggaagaagggacttttcctcttgaagttgaa |
274 |
Q |
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| T |
5343723 |
atatttcaaatctaccattgttgaacactgatcttgagaaagaagggacttatccagttgaagttgaa |
5343790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 283
Target Start/End: Original strand, 5351500 - 5351584
Alignment:
| Q |
199 |
gtacgttgatatttcgaatttgccattgttgaacactgatcttgaggaagaagggacttttcctcttgaagttgaagattttcgt |
283 |
Q |
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| T |
5351500 |
gtacattgatatttcaactttaccaatgttgaacactgatctagagatagaagggaattttccagctgaagttgaagcttttcgt |
5351584 |
T |
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