View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4354-Insertion-13 (Length: 299)
Name: NF4354-Insertion-13
Description: NF4354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4354-Insertion-13 |
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| [»] chr8 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 102 - 299
Target Start/End: Complemental strand, 10233978 - 10233781
Alignment:
| Q |
102 |
gtagatgtcattggagttgttcaggacatgggttactgtcaactaaatgaagggaaaaaacttcaagtcaatttcactatgaaagatataaggtttagtt |
201 |
Q |
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| T |
10233978 |
gtagatgtcattggagttgttcaggacatgggttactgtcaactaaatgaagggaaaaagcttcaagtcaatttcactatgaaagatataaggtttagtt |
10233879 |
T |
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| Q |
202 |
acactttagttatcatattgcaatacttattaccttataattttttccttagagttttcaaccaacttaaattcctttcgtgttatgattcttagtga |
299 |
Q |
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| T |
10233878 |
acactttagttatcatattgcaatacttattaccttataattttttccttagagttttcaaccaacttaaattcctttcgtgttatgattctttgtga |
10233781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 10234074 - 10234044
Alignment:
| Q |
7 |
agtaagttcactcaccaaagttatattcatg |
37 |
Q |
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| T |
10234074 |
agtaagttcactcaccaaagttatattcatg |
10234044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 102 - 299
Target Start/End: Complemental strand, 8336862 - 8336665
Alignment:
| Q |
102 |
gtagatgtcattggagttgttcaggacatgggttactgtcaactaaatgaagggaaaaaacttcaagtcaatttcactatgaaagatataaggtttagtt |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8336862 |
gtagatgtcattggagttgttcaggacatgggttactgtcaactaaatgaagggaaaaagcttcaagtcaatttcactatgaaagatataaggtttagtt |
8336763 |
T |
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| Q |
202 |
acactttagttatcatattgcaatacttattaccttataattttttccttagagttttcaaccaacttaaattcctttcgtgttatgattcttagtga |
299 |
Q |
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| T |
8336762 |
acactttagttatcatattgcaatacttattaccttataattttttccttacagttttcaaccaacttaaattcctttcgtgttatgattcttagtga |
8336665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 8336958 - 8336921
Alignment:
| Q |
7 |
agtaagttcactcaccaaagttatattcatgacacaca |
44 |
Q |
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| T |
8336958 |
agtaagttcactcaccaaagttatattcatgactcaca |
8336921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 22080888 - 22080835
Alignment:
| Q |
104 |
agatgtcattggagttgttcaggacatgggttactgtcaactaaatgaagggaa |
157 |
Q |
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||||||||||||| | || ||||||||||| ||||||||| | ||||||||||| |
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| T |
22080888 |
agatgtcattggaatggtccaggacatgggctactgtcaattgaatgaagggaa |
22080835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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