View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4354-Insertion-17 (Length: 141)
Name: NF4354-Insertion-17
Description: NF4354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4354-Insertion-17 |
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| [»] chr1 (5 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 1e-67; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 48584499 - 48584632
Alignment:
| Q |
8 |
gttaacattattaattaatgatgcatgtttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgcc |
107 |
Q |
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| T |
48584499 |
gttaacattattaattaatgatgcatgtttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgcc |
48584598 |
T |
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| Q |
108 |
ttcttcttccacttttttgcattttgcttcaact |
141 |
Q |
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| T |
48584599 |
ttcttcttccacttgtttgcattttgcttcaact |
48584632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 36 - 141
Target Start/End: Complemental strand, 48619150 - 48619045
Alignment:
| Q |
36 |
ttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttgct |
135 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||| || |
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| T |
48619150 |
ttctgaatgtcttccataaattcatcaagattccgatcagaggatccaccaatggccactgcttcatccgccttcttcttccacttcattgcatttttct |
48619051 |
T |
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| Q |
136 |
tcaact |
141 |
Q |
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|||||| |
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| T |
48619050 |
tcaact |
48619045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 11546415 - 11546519
Alignment:
| Q |
35 |
tttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttgc |
134 |
Q |
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| T |
11546415 |
tttcttaatgtcttccaaaaattcatcaagattccgatcagaggatccaccaatggccactgcttcctcagcctttttcttccactttattgcatttttc |
11546514 |
T |
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| Q |
135 |
ttcaa |
139 |
Q |
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||||| |
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| T |
11546515 |
ttcaa |
11546519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 34 - 141
Target Start/End: Original strand, 48628108 - 48628215
Alignment:
| Q |
34 |
gtttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttg |
133 |
Q |
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|||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||| |||| |||||||||||| ||||||||| |
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| T |
48628108 |
gttttttaatgtcttccataaatgcatcaagattccaatcagaggatccaccaacggccactgcttcctctgcctccttcttccacttcattgcattttt |
48628207 |
T |
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| Q |
134 |
cttcaact |
141 |
Q |
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|||||||| |
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| T |
48628208 |
cttcaact |
48628215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 48666350 - 48666457
Alignment:
| Q |
33 |
tgtttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcatttt |
132 |
Q |
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||||||||||||||||||||||| ||||||||| || || ||||| |||||||| |||| |||||||||||| ||| ||| |||| ||||||||| |
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| T |
48666350 |
tgtttcttaatgtcttccataaatgcatcaagatgtcggtccgaggaaccaccaaccgccactgcttcctccgccgcctttttcaacttggttgcatttt |
48666449 |
T |
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| Q |
133 |
gcttcaac |
140 |
Q |
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||||||| |
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| T |
48666450 |
tcttcaac |
48666457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 36 - 141
Target Start/End: Complemental strand, 19666506 - 19666401
Alignment:
| Q |
36 |
ttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttgct |
135 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||| |||| |||||||||||| ||||||||||| |||||||||||| |
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| T |
19666506 |
ttcttaatgtcttccataaattcatcaagattccgatcagaggaaccaccggtcgccaccgcttcctccgccgctttcttccacttgattgcattttgct |
19666407 |
T |
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| Q |
136 |
tcaact |
141 |
Q |
| |
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|||||| |
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| T |
19666406 |
tcaact |
19666401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 27223151 - 27223254
Alignment:
| Q |
38 |
cttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttgcttc |
137 |
Q |
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|||||||||||||||||| ||||||||| |||||||||||||||| | ||| | ||| |||| || |||||||||||| |||| ||||||||| |
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| T |
27223151 |
cttaatgtcttccataaatgcatcaagatgttgatcagaggatccacctatggcaacagcagcctctgctgccttcttccacttgattgcgttttgcttc |
27223250 |
T |
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| Q |
138 |
aact |
141 |
Q |
| |
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|||| |
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| T |
27223251 |
aact |
27223254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 27227341 - 27227389
Alignment:
| Q |
37 |
tcttaatgtcttccataaactcatcaagattccgatcagaggatccacc |
85 |
Q |
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||||||||||||||||||| |||||| || |||||||||||| ||||| |
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| T |
27227341 |
tcttaatgtcttccataaatgcatcaatatgccgatcagaggaaccacc |
27227389 |
T |
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