View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4354-Insertion-2 (Length: 943)
Name: NF4354-Insertion-2
Description: NF4354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4354-Insertion-2 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 837; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 837; E-Value: 0
Query Start/End: Original strand, 8 - 935
Target Start/End: Complemental strand, 32898831 - 32897901
Alignment:
| Q |
8 |
gaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttgatgttgtagatgttgtggagaaacaggacacgtgct |
107 |
Q |
| |
|
||||| |||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32898831 |
gaaacaagatcaaaacttccattgctgttgctgttgaagttgttgtgaacagagacaacatttgatgttgtagatgttgtggagaaacaggacacgtgct |
32898732 |
T |
|
| Q |
108 |
cctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggcggtgctagcggcagtgtagggagatgaatcaagaag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32898731 |
cctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggcggtgctagcggcggtgtagggagatgaatcaagaag |
32898632 |
T |
|
| Q |
208 |
aggtggaaggtaaactgaaggaggtgaacttggttcaggacaaagactcatgctgttgttactggctgagtttgaggctattttggtcttttttgcacca |
307 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32898631 |
aggtggaaggtaaactgaagaaggtgaacttggttcaggacaaagactcatgctgttgttactggctgagtttgaggctattttggtcttttttgcacca |
32898532 |
T |
|
| Q |
308 |
cttgcagtggcggctgtcacggtggtgcttccatttccagtgttgctcttttgaaacacacgtgaaatgacccattcatccttcataagtccaaaaaata |
407 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32898531 |
cttgtggtggcaactgtcacggtggtgcttccatttccagtgttgctcttttgaaacacacgtgaaatgacccattcatccttcataagttcaaaaaata |
32898432 |
T |
|
| Q |
408 |
gatggaagaattagttataat---gaaaacaaaattcaaaagcatgttattaacttattatgtaactgtttataaagtgagattttggtagaaaaagctg |
504 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32898431 |
gatgtaagaattagttataataatgaaaacaaaattcaaaagcatgttattaacttattatgtaactgtttataaagtgagattttggtagaaaaagctg |
32898332 |
T |
|
| Q |
505 |
aacatggaagcattaatattttgaaggtagttaatgataattgatgatgataaactaaaccctatgcaaaatgaaaactgtggtgaaaatagcagtgata |
604 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32898331 |
aacatggaagcattaatattttgtaggtagttaatgataattgatgatgataaactaaaccctatgcaaaatgaaaactgtggtgaaaatggcagtgata |
32898232 |
T |
|
| Q |
605 |
tacgtacatactagtttttagcataagcaaaacagtttttgaaaaattgatgtgaatggttatggttcccatgcaaactcatgtattcacaaaagtgtga |
704 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32898231 |
tacgtacatactagttttaagcataagcaaaatagtttttgaaaaatgaatgtgaatggttatggttcccatgcaaactcatgtattcacaaaagtgtga |
32898132 |
T |
|
| Q |
705 |
taagaaactcttacatgcaccatagggtaataaccattaacatgtaaatgatgtgtcaagattgattaattctctgcagtaatcattcatctcaaaaagt |
804 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32898131 |
taggaaactcttacatgcaccatagggtaataaccattaacatgtaaatgatgtgtcaagattgattaattctctgcagtaatcattcatctcaaaaagt |
32898032 |
T |
|
| Q |
805 |
acaaaaaatcctaatcgagataaatcatcaacattgataaatgaaaccaatgcatatacaagcctattaagaaaaacaagattccacctatctctcatag |
904 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32898031 |
acaaaaaatcctaatcgagataaatcatcaacattgataaatgaaaccaatgcatatacaagcctattaagcaaaacaagattccacctatctctcatag |
32897932 |
T |
|
| Q |
905 |
tcttttgaaaggatcaaaatgcggctcatat |
935 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
32897931 |
tcttttgaaaggatcaaaatgcggctcatat |
32897901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 391
Target Start/End: Complemental strand, 17415161 - 17414792
Alignment:
| Q |
7 |
agaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttgatgttgtagatgttgtggagaaacaggacacgtgc |
106 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| ||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17415161 |
agaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcagcgacaacatttgatgttgtagatgttgtggagaaacaggacacgtgc |
17415062 |
T |
|
| Q |
107 |
tcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggcggtgctagcggcagtgtagggagatgaatcaagaa |
206 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| | |||||||||| |||| |||||||||| ||||| |||||||||||||||| |
|
|
| T |
17415061 |
tcctttagatcagtgttgttgg------------agttacacatttggtcgccgttgaatgtggcgatgctagcggcggtgtaaggagatgaatcaagaa |
17414974 |
T |
|
| Q |
207 |
gaggtggaaggtaaactgaaggaggtgaacttggttcaggacaaagactcatgctgttgttactggctgagtttgaggctattttggtcttttttgcacc |
306 |
Q |
| |
|
|||||||||| ||||| |||| ||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17414973 |
gaggtggaagataaacggaagaaggtgaacttggttctggacagagactcatgctgttgttgttggctgagtttgaggctattttggtctgttttgcacc |
17414874 |
T |
|
| Q |
307 |
acttgcagtggcggctgtcacggtggtgcttccatttccagtgttgctcttttgaaacacacgtgaaatgacccattcatccttc |
391 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17414873 |
actt---gtggtggctgtcacggtggtgcttccattttcaatgttgctcttttgaaacacacgtgaaatgacccattcatccttc |
17414792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 210; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 7 - 391
Target Start/End: Original strand, 20409656 - 20410025
Alignment:
| Q |
7 |
agaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttgatgttgtagatgttgtggagaaacaggacacgtgc |
106 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| ||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20409656 |
agaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcaacgacaacatttgatgttgtagatgttgtggagaaacaggacacgtgc |
20409755 |
T |
|
| Q |
107 |
tcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggcggtgctagcggcagtgtagggagatgaatcaagaa |
206 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| | |||||||||| |||| |||||||||| ||||| |||||||||||||||| |
|
|
| T |
20409756 |
tcctttagatcagtgttgttgg------------agttacacatttggtcgccgttgaatgtggcgatgctagcggcggtgtaaggagatgaatcaagaa |
20409843 |
T |
|
| Q |
207 |
gaggtggaaggtaaactgaaggaggtgaacttggttcaggacaaagactcatgctgttgttactggctgagtttgaggctattttggtcttttttgcacc |
306 |
Q |
| |
|
|||||||||| ||||| |||| ||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
20409844 |
gaggtggaagataaacggaagaaggtgaacttggttctggacagagactcatgctgttgttgttggctgagtttgaggctattttggtctgttttgcacc |
20409943 |
T |
|
| Q |
307 |
acttgcagtggcggctgtcacggtggtgcttccatttccagtgttgctcttttgaaacacacgtgaaatgacccattcatccttc |
391 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20409944 |
actt---gtggtggctgtcacggtggtgcttccatttccaacgttgctcttttgaaacacacgtgaaatgacccattcatccttc |
20410025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 210; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 7 - 391
Target Start/End: Complemental strand, 46312685 - 46312316
Alignment:
| Q |
7 |
agaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttgatgttgtagatgttgtggagaaacaggacacgtgc |
106 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| ||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46312685 |
agaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcaacgacaacatttgatgttgtagatgttgtggagaaacaggacacgtgc |
46312586 |
T |
|
| Q |
107 |
tcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggcggtgctagcggcagtgtagggagatgaatcaagaa |
206 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| | |||||||||| |||| |||||||||| ||||| |||||||||||||||| |
|
|
| T |
46312585 |
tcctttagatcagtgttgttgg------------agttacacatttggtcgccgttgaatgtggcgatgctagcggcggtgtaaggagatgaatcaagaa |
46312498 |
T |
|
| Q |
207 |
gaggtggaaggtaaactgaaggaggtgaacttggttcaggacaaagactcatgctgttgttactggctgagtttgaggctattttggtcttttttgcacc |
306 |
Q |
| |
|
|||||||||| ||||| |||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
46312497 |
gaggtggaagataaacggaagaaggtgaacttggttctggacaaagactcatgctgttgttgttggctgagtttgaggctattttggtctgttttgcacc |
46312398 |
T |
|
| Q |
307 |
acttgcagtggcggctgtcacggtggtgcttccatttccagtgttgctcttttgaaacacacgtgaaatgacccattcatccttc |
391 |
Q |
| |
|
|||| |||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46312397 |
actt---gtggtggctgtcacgatggtgcttccatttccaatgttgctcttttgaaacacacgtgaaatgacccatacatccttc |
46312316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 297 - 391
Target Start/End: Complemental strand, 2999830 - 2999739
Alignment:
| Q |
297 |
tttttgcaccacttgcagtggcggctgtcacggtggtgcttccatttccagtgttgctcttttgaaacacacgtgaaatgacccattcatccttc |
391 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2999830 |
tttttgcaccacttg---tggtggctgtcacggtggtgcttccattttcaatgttgctcttttgaaacacacgtgaaatgacccattcatccttc |
2999739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 7 - 391
Target Start/End: Complemental strand, 40169248 - 40168888
Alignment:
| Q |
7 |
agaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttgatgttgtagatgttgtggagaaacaggacacgtgc |
106 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| ||||| ||||||| ||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40169248 |
agaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcagcgacaacatttgatgttgt---------ggagaaacaggacacgtgc |
40169158 |
T |
|
| Q |
107 |
tcctttagatcagtgttgttgttggagctgttgtagttacacatttgaccaccgttgaatgaggcggtgctagcggcagtgtagggagatgaatcaagaa |
206 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||| | |||||||||| |||| ||||||| || ||||| |||||||||||||||| |
|
|
| T |
40169157 |
tcctttagatcggtgttgttgg------------agttacacatttggtcgccgttgaatgtggcgatgctagcagcggtgtaaggagatgaatcaagaa |
40169070 |
T |
|
| Q |
207 |
gaggtggaaggtaaactgaaggaggtgaacttggttcaggacaaagactcatgctgttgttactggctgagtttgaggctattttggtcttttttgcacc |
306 |
Q |
| |
|
|||||||||| ||||| |||| ||||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40169069 |
gaggtggaagataaacggaagaaggtgaacttggttctggacagagactcatgttgttgttgttggctgagtttgaggctattttggtctgttttgcacc |
40168970 |
T |
|
| Q |
307 |
acttgcagtggcggctgtcacggtggtgcttccatttccagtgttgctcttttgaaacacacgtgaaatgacccattcatccttc |
391 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40168969 |
actt---gtggtggctgtcacggtggtgcttccatttccaatgttgctcttttgaaacacacgtgaaatgacccattcatccttc |
40168888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 7e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 46483000 - 46483093
Alignment:
| Q |
7 |
agaaacgagatcaaaacttccattgttgttgccgttgaagctgttgtgaacagagacaacatttgatgttgtagatgttgtggagaaacaggac |
100 |
Q |
| |
|
|||||| |||||||| |||||||||||||||| | ||||| ||||||| ||||||||||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
46483000 |
agaaacaagatcaaagcttccattgttgttgctgctgaagttgttgtggacagagacaacatttgatgttctagatattgtggagaaataggac |
46483093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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