View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4354-Insertion-3 (Length: 926)
Name: NF4354-Insertion-3
Description: NF4354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4354-Insertion-3 |
 | |
|
| [»] scaffold0201 (2 HSPs) |
| | |
|
| [»] scaffold0570 (4 HSPs) |
| | |
|
| [»] scaffold0022 (3 HSPs) |
| | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 559; Significance: 0; HSPs: 27)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 207 - 846
Target Start/End: Complemental strand, 23354217 - 23353577
Alignment:
| Q |
207 |
ttttattttattgtaccattgtgattaataatcggcgcttgaaattcataatctgcgc--agaaaatgagtagtgctttttcctctatatcttcttctga |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23354217 |
ttttattttattgtaccattgtgattaataatcggcgcttggaattcataatctgcgcgcagaaaatgactagtgctttttcctctatatcttcttctga |
23354118 |
T |
|
| Q |
305 |
tgtggggcctccgaaaaaatatgacgtttttcttagctttcgaggcgaggatacccgcagaaacttcacgagccatctttatgatgctctaagccgaaag |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23354117 |
tgtggggcctccgaaaaaatatgacgtttttcttagctttcgag-cgaggatacccgcagaaacttcacgagccatctttatgatgctctaagccgaaag |
23354019 |
T |
|
| Q |
405 |
acagttgaaacctttatagacaacaatgagcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatgcatctattgtca |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23354018 |
acagttgaaacctttatagacaacaatgagcttcaaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtca |
23353919 |
T |
|
| Q |
505 |
ttttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgtgatacctgtttt |
604 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||| || |||||||| ||||| |
|
|
| T |
23353918 |
tcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatgtaacagattgtgataccagtttt |
23353819 |
T |
|
| Q |
605 |
ttacaacatagatccatcacatgtgaggaagcaaatcgggagtttcaagcaagcctttgcaaaacataagcgagatttgaagcacaatattgacaagttg |
704 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23353818 |
ttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgaaaaacataagcgagatttgaagcacaataatgacaagttg |
23353719 |
T |
|
| Q |
705 |
gagaaatggaaatctgctctcaccgaggcagctaatttagttggttgggactctcgaaattataggtgagtaaaacgaactatcaagcattctacatgtc |
804 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23353718 |
gagaaatggaaagctgctctcaccgaggcagctaatttagttggttgggactctcgaaattataggtgagtaaaacgaactatcaagcattctacatgtc |
23353619 |
T |
|
| Q |
805 |
atgacttgtatgtttccaaaattataaataaaatctattaac |
846 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23353618 |
atgacttgtatgtttccaaaattataaataaaatctattaac |
23353577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 266 - 788
Target Start/End: Complemental strand, 23449527 - 23449005
Alignment:
| Q |
266 |
gaaaatgagtagtgctttttcctctatatcttcttctgatgtggggcctccgaaaaaatatgacgtttttcttagctttcgaggcgaggatacccgcaga |
365 |
Q |
| |
|
||||||||| ||||| |||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
23449527 |
gaaaatgagcagtgccttttcctctatagtttcttctgatgtggtgcctcagaaaaaatatgacgtttttcttagctttcgaggtgaggatactcgcaga |
23449428 |
T |
|
| Q |
366 |
aacttcacgagccatctttatgatgctctaagccgaaagacagttgaaacctttatagacaacaatgagcttcaaaaaggagatgagatctcgccagcac |
465 |
Q |
| |
|
|||||||| |||||||||||||||||| | |||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
23449427 |
aacttcactagccatctttatgatgctttgagccgaaagaaagttgaaacatttatagacaacaatgagcttcgaaaaggagatgagatctcggcagcac |
23449328 |
T |
|
| Q |
466 |
tcatcaaagccattgaggagtcacatgcatctattgtcattttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttga |
565 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23449327 |
tcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttga |
23449228 |
T |
|
| Q |
566 |
atgcaagcaatatatggaacaaatcgtgatacctgttttttacaacatagatccatcacatgtgaggaagcaaatcgggagtttcaagcaagcctttgca |
665 |
Q |
| |
|
||||||| |||||||| |||| || |||||||| |||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||| |
|
|
| T |
23449227 |
atgcaagaaatatatgcaacagattgtgataccagttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgca |
23449128 |
T |
|
| Q |
666 |
aaacataagcgagatttgaagcacaatattgacaagttggagaaatggaaatctgctctcaccgaggcagctaatttagttggttgggactctcgaaatt |
765 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||| ||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23449127 |
aaacataagcaagatttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgaggcagctaatttggttggttgggactctcgaaatt |
23449028 |
T |
|
| Q |
766 |
ataggtgagtaaaacgaactatc |
788 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
23449027 |
ataggtaagtaaaacgaactatc |
23449005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 261 - 788
Target Start/End: Complemental strand, 23501295 - 23500768
Alignment:
| Q |
261 |
gcgcagaaaatgagtagtgctttttcctctatatcttcttctgatgtggggcctccgaaaaaatatgacgtttttcttagctttcgaggcgaggataccc |
360 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||| |||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |||||||| | |
|
|
| T |
23501295 |
gcgccgaaaatgagcagtgctttttcctctatagtttcttctgatgtggtgcctcagaaaaaatatgacatttttcttagctttcgaggtgaggatactc |
23501196 |
T |
|
| Q |
361 |
gcagaaacttcacgagccatctttatgatgctctaagccgaaagacagttgaaacctttatagacaacaatgagcttcaaaaaggagatgagatctcgcc |
460 |
Q |
| |
|
||||||||||||| ||||||||||| || ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23501195 |
gcagaaacttcactagccatctttacgacgctctgagccgaaagaaagttgaaacctttatagacaacaatgagcttcaaaaaggagatgagatctcggc |
23501096 |
T |
|
| Q |
461 |
agcactcatcaaagccattgaggagtcacatgcatctattgtcattttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagatt |
560 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
23501095 |
agcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcgtcaaaatggtgcttgaatgagctcaaaaagatt |
23500996 |
T |
|
| Q |
561 |
cttgaatgcaagcaatatatggaacaaatcgtgatacctgttttttacaacatagatccatcacatgtgaggaagcaaatcgggagtttcaagcaagcct |
660 |
Q |
| |
|
|||||||| ||| |||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||| |
|
|
| T |
23500995 |
cttgaatgtaagaaatatatggagcagattgtgataccagttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcct |
23500896 |
T |
|
| Q |
661 |
ttgcaaaacataagcgagatttgaagcacaatattgacaagttggagaaatggaaatctgctctcaccgaggcagctaatttagttggttgggactctcg |
760 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| | |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23500895 |
ttgcaaaacataagcgagatttgaagcacaataatgacaagttgaagaaatggaaagattctctcaccgaggcagctaatttggttggttgggactctcg |
23500796 |
T |
|
| Q |
761 |
aaattataggtgagtaaaacgaactatc |
788 |
Q |
| |
|
|||||| |||| |||||||||||||||| |
|
|
| T |
23500795 |
aaattacaggtaagtaaaacgaactatc |
23500768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 265 - 779
Target Start/End: Complemental strand, 23465661 - 23465147
Alignment:
| Q |
265 |
agaaaatgagtagtgctttttcctctatatcttcttctgatgtggggcctccgaaaaaatatgacgtttttcttagctttcgaggcgaggatacccgcag |
364 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||| ||| |||||||||||| |||||||||||||||||||| |||||||| ||||| |
|
|
| T |
23465661 |
agaaaatgagcagtgctttttcctctgtatcttcttctgatgtggtccctaagaaaaaatatgaggtttttcttagctttcgaggtgaggatactcgcag |
23465562 |
T |
|
| Q |
365 |
aaacttcacgagccatctttatgatgctctaagccgaaagacagttgaaacctttatagacaacaatgagcttcaaaaaggagatgagatctcgccagca |
464 |
Q |
| |
|
||||||||| ||||||||||| || ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23465561 |
aaacttcactagccatctttacgacgctctgagccgaaagaaagttgaaacctttatagacaacaatgagcttcaaaaaggagatgagatctcggcagca |
23465462 |
T |
|
| Q |
465 |
ctcatcaaagccattgaggagtcacatgcatctattgtcattttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttg |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23465461 |
ctcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttg |
23465362 |
T |
|
| Q |
565 |
aatgcaagcaatatatggaacaaatcgtgatacctgttttttacaacatagatccatcacatgtgaggaagcaaatcgggagtttcaagcaagcctttgc |
664 |
Q |
| |
|
|||||||| ||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| |
|
|
| T |
23465361 |
aatgcaagaaatatatggaacagattgtgataccagttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgc |
23465262 |
T |
|
| Q |
665 |
aaaacataagcgagatttgaagcacaatattgacaagttggagaaatggaaatctgctctcaccgaggcagctaatttagttggttgggactctcgaaat |
764 |
Q |
| |
|
||||||||||||| ||||||||||||||| || |||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
23465261 |
aaaacataagcgaaatttgaagcacaataacgataagttggagaaatggaaagctgctctcactgatgcagctaatttagttggttgggactctcgaaat |
23465162 |
T |
|
| Q |
765 |
tataggtgagtaaaa |
779 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
23465161 |
tataggtaagtaaaa |
23465147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 261 - 827
Target Start/End: Complemental strand, 23456296 - 23455729
Alignment:
| Q |
261 |
gcgcagaaaatgagtagtgctttttcctctatatcttcttctgatgtggggcctccgaaaaaatatgacgtttttcttagctttcgaggcgaggataccc |
360 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
23456296 |
gcgcagaaaatgagcagtgctttttcctctatatcttcttcttatgtggggcctccgaaaaaatatgacgtttttcttagctttcgaggtgaggatactc |
23456197 |
T |
|
| Q |
361 |
gcagaaacttcacgagccatctttatgatgctctaagccgaaagacagttgaaacctttatagacaacaatgagcttcaaaaaggagatgagatctcgcc |
460 |
Q |
| |
|
||||||||||||| |||||||||||||||||| | || ||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
23456196 |
gcagaaacttcacaagccatctttatgatgctttgagtcgaaagaaagttgaaaccttcatagacaacaatgaccttcaaaaaggagatgagatctcacc |
23456097 |
T |
|
| Q |
461 |
agcactcatcaaagccattgaggagtcacatgcatctattgtcattttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagatt |
560 |
Q |
| |
|
| ||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| || ||||| |||||||||||| |
|
|
| T |
23456096 |
aacactcatcaaaaccattgaggagtcacatgtgtctattgtcatcttctcagaaaactacgcttcctcaaaatggtgtttgaatgatctcaaaaagatt |
23455997 |
T |
|
| Q |
561 |
cttgaatgcaagcaatatatggaacaaatcgtgatacctgttttttacaacatagatccatcacatgtgaggaagcaaatcgggagtttcaagcaagcct |
660 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
23455996 |
ctagaatgcaagcaatatatggaacagatcgtgatacctattttttacaacattgatccatcacatgtgaggaagcaaaccgggagttacaagcaagcct |
23455897 |
T |
|
| Q |
661 |
ttgcaaaacataagcgagatttgaagcacaatattgacaagttggagaaatggaaatctgctctcaccgaggcagctaatttagttggttgggactctcg |
760 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| | ||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
23455896 |
ttgcaaaacataagcaagatttgaagcacaataatgccaagttggagaaatggaaagcctctctcactgaggcagctaatttagttggatgggactctca |
23455797 |
T |
|
| Q |
761 |
aaattataggtgagtaaaacgaactatcaagcattctacatg-tcatgacttgtatgtttccaaaatt |
827 |
Q |
| |
|
||||||||||| | |||||| ||||||| ||| || | ||| |||| |||||||||||||||||||| |
|
|
| T |
23455796 |
aaattataggtaaataaaacaaactatccagctttggatatgttcatcacttgtatgtttccaaaatt |
23455729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 265 - 779
Target Start/End: Complemental strand, 23407007 - 23406493
Alignment:
| Q |
265 |
agaaaatgagtagtgctttttcctctatatcttcttctgatgtggggcctccgaaaaaatatgacgtttttcttagctttcgaggcgaggatacccgcag |
364 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||| |||||||| ||||| |
|
|
| T |
23407007 |
agaaaatgagcagtgctttttcctctatatcttcttctgatgtggtccctaagaaaaaatatgaagtttttcttagctttcgaggtgaggatactcgcag |
23406908 |
T |
|
| Q |
365 |
aaacttcacgagccatctttatgatgctctaagccgaaagacagttgaaacctttatagacaacaatgagcttcaaaaaggagatgagatctcgccagca |
464 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |||||||||| | || ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23406907 |
aaacttcactagccatctttatgacgctctgagccgaaagaaaattaaaatctttatagacaacaatgagcttcaaaaaggagatgagatctcggcagca |
23406808 |
T |
|
| Q |
465 |
ctcatcaaagccattgaggagtcacatgcatctattgtcattttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttg |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23406807 |
ctcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttg |
23406708 |
T |
|
| Q |
565 |
aatgcaagcaatatatggaacaaatcgtgatacctgttttttacaacatagatccatcacatgtgaggaagcaaatcgggagtttcaagcaagcctttgc |
664 |
Q |
| |
|
|||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||| ||||||||||||||| |
|
|
| T |
23406707 |
aatgcaagaaatatatggaacagattgtgatacctgttttttacaacatagatccatcaaatgtgaggaagcagaccgggagttacaagcaagcctttgc |
23406608 |
T |
|
| Q |
665 |
aaaacataagcgagatttgaagcacaatattgacaagttggagaaatggaaatctgctctcaccgaggcagctaatttagttggttgggactctcgaaat |
764 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||| ||||||||||| | ||||||| |||||||||||||| |||||||||||||||| |||| |
|
|
| T |
23406607 |
aaaacataagcgagatttaaagcacaataatgacaagttgaagaaatggaaagattctctcactgaggcagctaatttggttggttgggactctcaaaat |
23406508 |
T |
|
| Q |
765 |
tataggtgagtaaaa |
779 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
23406507 |
tataggcaagtaaaa |
23406493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 317 - 820
Target Start/End: Complemental strand, 23435674 - 23435174
Alignment:
| Q |
317 |
gaaaaaatatgacgtttttcttagctttcgaggcgaggatacccgcagaaacttcacgagccatctttatgatgctctaagccgaaagacagttgaaacc |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
23435674 |
gaaaaaatatgacgtttttcttagctttcgaggtgaggatacccgcagaaacttcacatgccatctttatgatgctctgagccgaaagaaagttgaaacc |
23435575 |
T |
|
| Q |
417 |
tttatagacaacaatgagcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatgcatctattgtcattttctcagaaa |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23435574 |
tttatagacaacaatgagcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaa |
23435475 |
T |
|
| Q |
517 |
actatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgtgatacctgttttttacaacataga |
616 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
23435474 |
actatgcttcttcaaaatggtgcttaaatgagctcaaaaagattctagaatgcaagcaatatatggaattgaccgtgatacctgttttttacaacat--- |
23435378 |
T |
|
| Q |
617 |
tccatcacatgtgaggaagcaaatcgggagtttcaagcaagcctttgcaaaacataagcgagatttgaagcacaatattgacaagttggagaaatggaaa |
716 |
Q |
| |
|
||||||||||||||||||||| | |||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||| | ||||||||| |
|
|
| T |
23435377 |
tccatcacatgtgaggaagcagaccgggagttacaagcaagcatttgcaaaacataagcgagatttgaagcacaataatgacaagttgcataaatggaaa |
23435278 |
T |
|
| Q |
717 |
tctgctctcaccgaggcagctaatttagttggttgggactctcgaaattataggtgagtaaaacgaactatcaagcattctacatgtcatgacttgtatg |
816 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||| ||||||||||| || ||||||| ||||| || |||||||||||||||||||||| |
|
|
| T |
23435277 |
gccgctctcactgaggcagctaatttagttggttgggactctcaaaattataggtaagaaaaacgacctatccagatttctacatgtcatgacttgtata |
23435178 |
T |
|
| Q |
817 |
tttc |
820 |
Q |
| |
|
|||| |
|
|
| T |
23435177 |
tttc |
23435174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 265 - 837
Target Start/End: Complemental strand, 23481018 - 23480446
Alignment:
| Q |
265 |
agaaaatgagtagtgctttttcctctatatcttcttctgatgtggggcctccgaaaaaatatgacgtttttcttagctttcgaggcgaggatacccgcag |
364 |
Q |
| |
|
|||||||||| ||||||||||| || ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
23481018 |
agaaaatgagcagtgctttttcttccatatcttcttctgatgtggtgcctctgaaaaaatatgacgtttttcttagctttcgaggtgaggatactcgcag |
23480919 |
T |
|
| Q |
365 |
aaacttcacgagccatctttatgatgctctaagccgaaagacagttgaaacctttatagacaacaatgagcttcaaaaaggagatgagatctcgccagca |
464 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23480918 |
aaacttcaccagccatctttatgatgctctgagccgaaagaaagttgaaacctttatagacaacaataagcttcaaaaaggagatgagatctcgccagca |
23480819 |
T |
|
| Q |
465 |
ctcatcaaagccattgaggagtcacatgcatctattgtcattttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttg |
564 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
23480818 |
ctcatcaaagccattgagaagtcacatgcatctattgtcatcttctcagaaaactatgcttcttcaaaatggtgcttgaatgagctcaagaagattcttg |
23480719 |
T |
|
| Q |
565 |
aatgcaagcaatatatggaacaaatcgtgatacctgttttttacaacatagatccatcacatgtgaggaagcaaatcgggagtttcaagcaagcctttgc |
664 |
Q |
| |
|
|||||||| |||||| |||||| || |||||||| ||||||||||| ||||||||||||||||||||||| || | |||||||| | ||||||| ||||| |
|
|
| T |
23480718 |
aatgcaagaaatataaggaacacattgtgataccagttttttacaaaatagatccatcacatgtgaggaaccagaccgggagttacgagcaagcttttgc |
23480619 |
T |
|
| Q |
665 |
aaaacataagcgagatttgaagcacaatattgacaagttggagaaatggaaatctgctctcaccgaggcagctaatttagttggttgggactctcgaaat |
764 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||| || |||||||| | |||||||| |||||||||| ||||| |||||||||| || |||| |
|
|
| T |
23480618 |
aaaacataagcgagatttgaagagcaataatgacaagttacaggaatggaaagccgctctcactgaggcagctagtttaggcggttgggactttcaaaat |
23480519 |
T |
|
| Q |
765 |
tataggtgagtaaaacgaactatcaagcattctacatgtcatgacttgtatgtttccaaaattataaataaaa |
837 |
Q |
| |
|
| | || |||||||||||||||| ||| || |||||| ||||||||||||||| ||||||| ||| ||||| |
|
|
| T |
23480518 |
tttgagtaagtaaaacgaactatcgagctttgtacatgccatgacttgtatgttctcaaaattctaagtaaaa |
23480446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 317 - 771
Target Start/End: Complemental strand, 23474618 - 23474164
Alignment:
| Q |
317 |
gaaaaaatatgacgtttttcttagctttcgaggcgaggatacccgcagaaacttcacgagccatctttatgatgctctaagccgaaagacagttgaaacc |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
23474618 |
gaaaaaatatgacgtttttcttagctttcgaggtgaggatacccgcagaaacttcacatgccatctttatgatgctctgagccgaaagaaagttgaaacc |
23474519 |
T |
|
| Q |
417 |
tttatagacaacaatgagcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatgcatctattgtcattttctcagaaa |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
23474518 |
tttatagacaacaatgagcttcaaaaaggagataagatatcgccagcactcatcagagccattgaggagtcacatgtgtctattgtcatcttctcagaaa |
23474419 |
T |
|
| Q |
517 |
actatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgtgatacctgttttttacaacataga |
616 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||| || |||||||||||||||||||||||||| |
|
|
| T |
23474418 |
actatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatggtacagattgtgatacctgttttttacaacataga |
23474319 |
T |
|
| Q |
617 |
tccatcacatgtgaggaagcaaatcgggagtttcaagcaagcctttgcaaaacataagcgagatttgaagcacaatattgacaagttggagaaatggaaa |
716 |
Q |
| |
|
||||||||||||||||||||| | ||||||| |||||||||||| |||||||||||||||||||||||| ||||| ||||||||| || |||||||| |
|
|
| T |
23474318 |
tccatcacatgtgaggaagcagactgggagttacaagcaagccttcgcaaaacataagcgagatttgaagagcaataatgacaagttacaggaatggaaa |
23474219 |
T |
|
| Q |
717 |
tctgctctcaccgaggcagctaatttagttggttgggactctcgaaattataggt |
771 |
Q |
| |
|
||| ||||| |||||||||| |||||||||||||||||||| |||||| |||| |
|
|
| T |
23474218 |
gatgcactcactgaggcagctagtttagttggttgggactctcaaaattacaggt |
23474164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 317 - 771
Target Start/End: Complemental strand, 23442086 - 23441632
Alignment:
| Q |
317 |
gaaaaaatatgacgtttttcttagctttcgaggcgaggatacccgcagaaacttcacgagccatctttatgatgctctaagccgaaagacagttgaaacc |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
23442086 |
gaaaaaatatgacgtttttcttagctttcgaggtgaggatacccgcagaaacttcacatgccatctttatgatgctcggagccgaaagaaagttgaaacc |
23441987 |
T |
|
| Q |
417 |
tttatagacaacaatgagcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatgcatctattgtcattttctcagaaa |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
23441986 |
tttatagacaacaatgagcttcaaaaaggagataagatatcgccagcactcatcagagccattgaggagtcacatgtgtctattgtcatcttctcagaaa |
23441887 |
T |
|
| Q |
517 |
actatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgtgatacctgttttttacaacataga |
616 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||| || |||||||||||||||||||||||||| |
|
|
| T |
23441886 |
actatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatggtacagattgtgatacctgttttttacaacataga |
23441787 |
T |
|
| Q |
617 |
tccatcacatgtgaggaagcaaatcgggagtttcaagcaagcctttgcaaaacataagcgagatttgaagcacaatattgacaagttggagaaatggaaa |
716 |
Q |
| |
|
||||||||||||||||||||| | ||||||| |||||||||||| |||||||||||||||||||||||| ||||| ||||||||| || |||||||| |
|
|
| T |
23441786 |
tccatcacatgtgaggaagcagactgggagttacaagcaagccttcgcaaaacataagcgagatttgaagagcaataatgacaagttacaggaatggaaa |
23441687 |
T |
|
| Q |
717 |
tctgctctcaccgaggcagctaatttagttggttgggactctcgaaattataggt |
771 |
Q |
| |
|
||| ||||| |||||||||| |||||||||||||||||||| |||||| |||| |
|
|
| T |
23441686 |
gatgcactcactgaggcagctagtttagttggttgggactctcaaaattacaggt |
23441632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 244 - 785
Target Start/End: Complemental strand, 23388670 - 23388127
Alignment:
| Q |
244 |
cttgaaattcataatctgcg--cagaaaatgagtagtgctttttcctctatatcttcttctgatgtggggcctccgaaaaaatatgacgtttttcttagc |
341 |
Q |
| |
|
|||| |||||||||||| || ||||||||||| ||||||||||||||| |||| ||||| ||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
23388670 |
cttggaattcataatctccgagcagaaaatgagcagtgctttttcctctgtatcctcttcctctgtggcgcctcagaaaaaatatgacgtttttcttagc |
23388571 |
T |
|
| Q |
342 |
tttcgaggcgaggatacccgcagaaacttcacgagccatctttatgatgctctaagccgaaagacagttgaaacctttatagacaacaatgagcttcaaa |
441 |
Q |
| |
|
|||||||| || ||||| |||||||||||||||||||||||||||||| |||| |||||||| | ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23388570 |
tttcgaggtgatgatactcgcagaaacttcacgagccatctttatgatactctgagccgaaaaaaagttgaaacctttatagacaacaatgagcttgaaa |
23388471 |
T |
|
| Q |
442 |
aaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatgcatctattgtcattttctcagaaaactatgcttcctcaaaatggtgctt |
541 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| | || ||| |||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23388470 |
aaggagatgagatctcaccagcactcatcaaagccattgaggagtcacacgtgtcaattatcatcttctcagaaaattatgcttcctcaaaatggtgctt |
23388371 |
T |
|
| Q |
542 |
aaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgtgatacctgttttttacaacatagatccatcacatgtgaggaagcaaatc |
641 |
Q |
| |
|
||||||||||| ||||||||| |||||||| |||||||| |||| || ||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
23388370 |
gaatgagctcaagaagattcttcaatgcaagaaatatatgcaacagattgtgatacctgttttttacaacatagatccctcacatgtgaggaagcagact |
23388271 |
T |
|
| Q |
642 |
gggagtttcaagcaagcctttgcaaaacataagcgagatttgaagcacaatattgacaagttggagaaatggaaatctgctctcaccgaggcagctaatt |
741 |
Q |
| |
|
||||||| | |||||||||| ||||||||| |||||||||||||| ||||| ||||||||| || |||||||| | ||||| |||||||||||| || |
|
|
| T |
23388270 |
gggagttacgagcaagccttcacaaaacatatgcgagatttgaagctcaataatgacaagttacaggaatggaaagccgctcttgccgaggcagctagtt |
23388171 |
T |
|
| Q |
742 |
tagttggttgggactctcgaaattataggtgagtaaaacgaact |
785 |
Q |
| |
|
||||||||||||||| || ||||| |||| ||| ||| ||||| |
|
|
| T |
23388170 |
tagttggttgggactttcagaattacaggtaagttaaaggaact |
23388127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 7 - 185
Target Start/End: Complemental strand, 23360844 - 23360666
Alignment:
| Q |
7 |
acataggtcattgtcaaattgatcatagaatttgaaatcaataaattgataaaattagtttaggccataccttctgttcgcaaatattttaattaaaact |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23360844 |
acataggtcattgtcaaattgatcatagaatttgaaatcaataaattgataaaattagtttaggccataccttctgttcgcaaatattttaattaaaact |
23360745 |
T |
|
| Q |
107 |
aaaaatgcttcccgaaatataagtttgactaaatgaaatatgtaacaatgagaatgagtgtcgtcaaaagtatcattga |
185 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23360744 |
aaaaatgttttccgaaatataagtttgactaaatgaaatatgtaacaatgagaatgagtgtcgtcaaaagtatcgttga |
23360666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 7 - 185
Target Start/End: Complemental strand, 23367684 - 23367506
Alignment:
| Q |
7 |
acataggtcattgtcaaattgatcatagaatttgaaatcaataaattgataaaattagtttaggccataccttctgttcgcaaatattttaattaaaact |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23367684 |
acataggtcattgtcaaattgatcatagaatttgaaatcaataaattgataaaattagtttaggccataccttctgttcgcaaatattttaattaaaact |
23367585 |
T |
|
| Q |
107 |
aaaaatgcttcccgaaatataagtttgactaaatgaaatatgtaacaatgagaatgagtgtcgtcaaaagtatcattga |
185 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23367584 |
aaaaatgttttccgaaatataagtttgactaaatgaaatatgtaacaatgagaatgagtgtcgtcaaaagtatcgttga |
23367506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 340 - 600
Target Start/End: Complemental strand, 21087570 - 21087310
Alignment:
| Q |
340 |
gctttcgaggcgaggatacccgcagaaacttcacgagccatctttatgatgctctaagccgaaagacagttgaaacctttatagacaacaatgagcttca |
439 |
Q |
| |
|
|||||||||| |||||||| |||| |||| |||| |||||||||||||||||||| |||| ||| | ||| |||||||||||||||||||| ||||| | |
|
|
| T |
21087570 |
gctttcgaggtgaggatactcgcaaaaacatcacaagccatctttatgatgctctgagccaaaataatgttcaaacctttatagacaacaataagcttaa |
21087471 |
T |
|
| Q |
440 |
aaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatgcatctattgtcattttctcagaaaactatgcttcctcaaaatggtgc |
539 |
Q |
| |
|
|||||||||| ||||| | |||| |||||||||||||||||| |||||||||||||| |||| ||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
21087470 |
aaaaggagataagatcacaccagaactcatcaaagccattgaagagtcacatgcatcgattgacatcttctcagaaaactacgcttcctcaaaatggtgc |
21087371 |
T |
|
| Q |
540 |
ttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgtgatacctg |
600 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||| |||||| ||||||||| |||||||||| |
|
|
| T |
21087370 |
ttgaatgagctcaaaaagattctagaatgcaagaaatataaggaacaaattgtgatacctg |
21087310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 432 - 703
Target Start/End: Complemental strand, 21088666 - 21088395
Alignment:
| Q |
432 |
gagcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatgcatctattgtcattttctcagaaaactatgcttcctcaa |
531 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| ||||| |||| ||||||||||||| || ||||||||| || || |||||||||||||||||||||| |
|
|
| T |
21088666 |
gagcttaaaaaaggagacgagatctcgccagcattcatcgaagctattgaggagtcacgtgtatctattgttatcttttcagaaaactatgcttcctcaa |
21088567 |
T |
|
| Q |
532 |
aatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgtgatacctgttttttacaacatagatccatcacatgtgag |
631 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||| ||| ||||||||| || |||||||||||||||||||| |||||||||| |||| ||| |
|
|
| T |
21088566 |
aatggtgcttgaatgagctcaaaaagattcaagaatgcaagaaatttatggaacagattgtgatacctgttttttacaaaatagatccattacatatgaa |
21088467 |
T |
|
| Q |
632 |
gaagcaaatcgggagtttcaagcaagcctttgcaaaacataagcgagatttgaagcacaatattgacaagtt |
703 |
Q |
| |
|
|||||| | |||||| |||| || |||||| ||| |||| ||||||||| ||| || ||| ||||||||| |
|
|
| T |
21088466 |
gaagcagacttggagttacaagaaaacctttgaaaagcatatgcgagatttaaagaacgataatgacaagtt |
21088395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 432 - 736
Target Start/End: Complemental strand, 36017460 - 36017156
Alignment:
| Q |
432 |
gagcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatgcatctattgtcattttctcagaaaactatgcttcctcaa |
531 |
Q |
| |
|
|||||| |||||||||| |||||||| ||||||| ||||||||||||||||||||| |||||||||| ||||| ||||| || |||||||||| || | |
|
|
| T |
36017460 |
gagcttgaaaaaggagacgagatctcatcagcactgatcaaagccattgaggagtcagatgcatctatagtcatattctcgaaagactatgcttcttcta |
36017361 |
T |
|
| Q |
532 |
aatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgtgatacctgttttttacaacatagatccatcacatgtgag |
631 |
Q |
| |
|
|||| ||||| ||||| ||| |||||||| ||||||||| || || || |||||| |||||||| |||| ||| | |||||||||||||||||||| |
|
|
| T |
36017360 |
aatgatgcttgaatgaactcgtcaagattctagaatgcaagaaagatcagggacaaattgtgataccgattttctacgaaatagatccatcacatgtgag |
36017261 |
T |
|
| Q |
632 |
gaagcaaatcgggagtttcaagcaagcctttgcaaaacataagcgagatttgaagcacaatattgacaagttggagaaatggaaatctgctctcaccgag |
731 |
Q |
| |
|
||| ||||| ||||||| |||||||||||||||||| |||||| | ||||||||||||| | ||||||||| |||||| |||| ||||||||| || |
|
|
| T |
36017260 |
gaatcaaattgggagttacaagcaagcctttgcaaagaataagcaaaatttgaagcacaacaaagacaagttgcagaaatagaaagatgctctcactgaa |
36017161 |
T |
|
| Q |
732 |
gcagc |
736 |
Q |
| |
|
||||| |
|
|
| T |
36017160 |
gcagc |
36017156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 330 - 766
Target Start/End: Complemental strand, 36025657 - 36025224
Alignment:
| Q |
330 |
gtttttcttagctttcgaggcgaggatacccgcagaaacttcacgagccatctttatgatgctctaagccgaaagacagttgaaacctttatagacaaca |
429 |
Q |
| |
|
|||||| | |||||||| || |||||||| || ||||||||||| |||||||||||||| ||||| ||| |||| |||| ||| |||||||| ||| |
|
|
| T |
36025657 |
gtttttatcagctttcgtggtgaggatactcgtagaaacttcacaagccatctttatgaagctctgagc---aagaaagttataacatttatagatgaca |
36025561 |
T |
|
| Q |
430 |
atgagcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatgcatctattgtcattttctcagaaaactatgcttcctc |
529 |
Q |
| |
|
|||||||| |||||||||| ||||||||| ||||||| |||||||| |||||| |||| ||||||||| ||||| |||||| || ||||||||||||| |
|
|
| T |
36025560 |
atgagcttgaaaaaggagacgagatctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctc |
36025461 |
T |
|
| Q |
530 |
aaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgtgatacctgttttttacaacatagatccatcacatgtg |
629 |
Q |
| |
|
|||||||||||| ||||| ||| |||||||| ||||||||| || ||| | ||| || |||||||||||||| || | |||||||||||||||||| |
|
|
| T |
36025460 |
aaaatggtgcttgaatgaactcgtcaagattctagaatgcaagaaagataatggacagattgtgatacctgttttctatgaaatagatccatcacatgtg |
36025361 |
T |
|
| Q |
630 |
aggaagcaaatcgggagtttcaagcaagcctttgcaaaacataagcgagatttgaagcacaatattgacaagttggagaaatggaaatctgctctcaccg |
729 |
Q |
| |
|
||||| || | || |||| | | ||| |||| ||||||| | | |||||||||||| | | ||||| ||| | ||||||||| ||||||||||| |
|
|
| T |
36025360 |
aggaatcagaaaggaagttatatgttagcttttgaaaaacatgaacaagatttgaagcagagcaaagacaaattgcaaaaatggaaagatgctctcaccg |
36025261 |
T |
|
| Q |
730 |
aggcagctaatttagttggttgggactctcgaaatta |
766 |
Q |
| |
|
| || || ||||||| ||| ||| |||||| |||||| |
|
|
| T |
36025260 |
aagctgccaatttagctgggtggtactctcaaaatta |
36025224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 326 - 771
Target Start/End: Complemental strand, 36004900 - 36004458
Alignment:
| Q |
326 |
tgacgtttttcttagctttcgaggcgaggatacccgcagaaacttcacgagccatctttatgatgctctaagccgaaagacagttgaaacctttatagac |
425 |
Q |
| |
|
|||||||||| |||||||| | || |||||||| | ||||| ||||| |||||||||||||| ||||| ||| |||| | || ||| |||||||| |
|
|
| T |
36004900 |
tgacgtttttattagcttttgtggtgaggatactggtagaaagttcacaagccatctttatgaagctctgagc---aagaaaattataacatttatagat |
36004804 |
T |
|
| Q |
426 |
aacaatgagcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatgcatctattgtcattttctcagaaaactatgctt |
525 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| ||||||| |||||||| ||||| || || ||||||||| ||||| |||||| || |||| |||| |
|
|
| T |
36004803 |
gacaatgagcttgaaaaaggagacgagatctcgtcagcactgatcaaagctattgaagattcgtctgcatctatcgtcatcttctcaaaagactacgctt |
36004704 |
T |
|
| Q |
526 |
cctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgtgatacctgttttttacaacatagatccatcaca |
625 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||||| ||||| ||| || || || ||| || |||||||| |||| ||| | |||||||||||||| |
|
|
| T |
36004703 |
cctcaaaatggtgcttgaatgaactcgtcaagattctagaatgtaagaaagatcagggacagattgtgataccgattttctacgaaatagatccatcaca |
36004604 |
T |
|
| Q |
626 |
tgtgaggaagcaaatcgggagtttcaagcaagcctttgcaaaacataagcgagatttgaagcacaatattgacaagttggagaaatggaaatctgctctc |
725 |
Q |
| |
|
||||||||| |||| || |||| ||||||||||||||||||| |||||||||||||| || | || | ||| ||||||||||| |||||| |
|
|
| T |
36004603 |
tgtgaggaatcaaaatggaagttatgggcaagcctttgcaaaacatgcacgagatttgaagcagaacaaagaaatgttaaagaaatggaaagatgctcta |
36004504 |
T |
|
| Q |
726 |
accgaggcagctaatttagttggttgggactctcgaaattataggt |
771 |
Q |
| |
|
|| || ||||| ||||||| || ||| |||||| |||||| |||| |
|
|
| T |
36004503 |
actgaagcagccaatttagcagggtggcactctcaaaattacaggt |
36004458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 417 - 736
Target Start/End: Complemental strand, 36034385 - 36034062
Alignment:
| Q |
417 |
tttatagacaacaatgagcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatgcatct----attgtcattttctca |
512 |
Q |
| |
|
||||||||| ||| |||||| |||||||||| |||||||| ||||||| ||||||||||||||||||||| |||||||| || |||| |||||| |
|
|
| T |
36034385 |
tttatagacgacagcgagcttgaaaaaggagacgagatctcatcagcactgatcaaagccattgaggagtcagatgcatctctatatattcatattctca |
36034286 |
T |
|
| Q |
513 |
gaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatat-atggaacaaatcgtgatacctgttttttacaac |
611 |
Q |
| |
|
|| |||||||||| |||||||||| || ||||| ||| |||||||| ||||||||| || || |||| || || |||||||| |||| ||| | |
|
|
| T |
36034285 |
aaagactatgcttcttcaaaatggtatttgaatgaactcgtcaagattctagaatgcaagaaagatcatggg-cagattgtgataccgattttctacgaa |
36034187 |
T |
|
| Q |
612 |
atagatccatcacatgtgaggaagcaaatcgggagtttcaagcaagcctttgcaaaacataagcgagatttgaagcacaatattgacaagttggagaaat |
711 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| ||||||| | ||||||||||||| | ||||||||| |||||| |
|
|
| T |
36034186 |
atagatccatcacatgtgaggaatcaaattgggagttacaagcaagcctttgcaaagcataagcaaaatttgaagcacaacaaagacaagttgcagaaat |
36034087 |
T |
|
| Q |
712 |
ggaaatctgctctcaccgaggcagc |
736 |
Q |
| |
|
|||| ||||||||| || ||||| |
|
|
| T |
36034086 |
agaaagatgctctcactgaagcagc |
36034062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 23501486 - 23501398
Alignment:
| Q |
7 |
acataggtcattgtcaaattgatcatagaatttgaaatcaataaattgataaaattagtttaggccataccttctgttcgcaaatattt |
95 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23501486 |
acataggtcattgtcaaattgatcatagaatttcaaatcaataaattgataaaattagtttaggccataccttctgttcgcaaatattt |
23501398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 23458941 - 23458864
Alignment:
| Q |
7 |
acataggtcattgtcaaattgatcatagaatttgaaatcaataaattgataaaattagtttaggccataccttctgtt |
84 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23458941 |
acataggtcattttcaaattgatcatagaatttgaaataaataaattgataaaattagtttaggccataccttctgtt |
23458864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 295 - 604
Target Start/End: Complemental strand, 36009979 - 36009673
Alignment:
| Q |
295 |
cttcttctgatgtggggcctccgaaaaaatatgacgtttttcttagctttcgaggcgaggatacccgcagaaacttcacgagccatctttatgatgctct |
394 |
Q |
| |
|
|||||||| ||||| | |||||||||||| |||||||||| |||| ||||| || |||| || || ||||||||||| ||||||| || |||||||| |
|
|
| T |
36009979 |
cttcttctattgtggtgtctccgaaaaaatttgacgtttttattagttttcgtggtgagggcactcgtagaaacttcacaggccatctctacgatgctct |
36009880 |
T |
|
| Q |
395 |
aagccgaaagacagttgaaacctttatagacaacaatgagcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatgca |
494 |
Q |
| |
|
||| |||| ||| || ||||| ||| || ||| ||| |||||||||||||||| || || |||| ||||||||||||||||||||| | || |
|
|
| T |
36009879 |
gagc---aagaaggttataatatttatggacgacggtgatcttgaaaaaggagatgagatatcatcatcactaatcaaagccattgaggagtcatacaca |
36009783 |
T |
|
| Q |
495 |
tctattgtcattttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgtga |
594 |
Q |
| |
|
||||| ||||| || ||| || | |||||||| |||||||||||||| ||||| ||| || ||||| |||||||| || || ||| |||||| |||| |
|
|
| T |
36009782 |
tctatagtcatcttttcaaaagattatgcttcttcaaaatggtgcttgaatgaactcgtcaaaattctagaatgcaaaaaagatttgggacaaattgtga |
36009683 |
T |
|
| Q |
595 |
tacctgtttt |
604 |
Q |
| |
|
|||||||||| |
|
|
| T |
36009682 |
tacctgtttt |
36009673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 313 - 631
Target Start/End: Original strand, 35766086 - 35766401
Alignment:
| Q |
313 |
ctccgaaaaaatatgacgtttttcttagctttcgaggcgaggatacccgcagaaacttcacgagccatctttatgatgctctaagccgaaagacagttga |
412 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||| || ||||| ||| ||| |||| |||||||||| ||| || | | || ||||| |||||| |
|
|
| T |
35766086 |
ctcctaaaaaatatgatgtttttcttagctttcgaggtgaagatactcgcgacaacatcacaagccatctttgtgaagcattgaaccaaaagaaagttga |
35766185 |
T |
|
| Q |
413 |
aacctttatagacaacaatgagcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatgcatctattgtcattttctca |
512 |
Q |
| |
|
||| | ||||||| ||| |||| |||||||||| | ||| |||| ||||||||| ||||||||| |||||||||| ||| ||||||| || ||| |
|
|
| T |
35766186 |
aacatatatagactacag---gcttgaaaaaggagaggggatagggccatcactcatcacagccattgaagagtcacatgtttctgttgtcatattttca |
35766282 |
T |
|
| Q |
513 |
gaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgtgatacctgttttttacaaca |
612 |
Q |
| |
|
|||||||||||||| || || ||||| || |||| | ||||| | ||||| ||| || || || |||||| ||||||||||| || || || | |
|
|
| T |
35766283 |
gaaaactatgcttcatccaagtggtgtttggatgaaattgtgaagatcatggaatgtaagaaagatcggggacaaattgtgatacctgtgttctataaaa |
35766382 |
T |
|
| Q |
613 |
tagatccatcacatgtgag |
631 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
35766383 |
tagatccatcacatgtgag |
35766401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 846 - 924
Target Start/End: Complemental strand, 23353529 - 23353450
Alignment:
| Q |
846 |
catattcgtgaccggaaatgaacatagattttagaaaatgacagcaacaaataattttag-aagtgaacaataatcattt |
924 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| |||| |||||||||||||| |
|
|
| T |
23353529 |
catattcgtgactggaaatgaacatagattttagaaaatgaaagcaaaaaataattttagaaagtaaacaataatcattt |
23353450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 23436369 - 23436309
Alignment:
| Q |
7 |
acataggtcattgtcaaattgatcatagaatttgaaatcaataaattgataaaattagttt |
67 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
23436369 |
acatagatcattgtcaaattgatcatagattttcaaatcaataaattgataaaattagttt |
23436309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 23389386 - 23389325
Alignment:
| Q |
38 |
ttgaaatcaataaattgataaaa-ttagtttaggccataccttctgttcgcaaatattttaa |
98 |
Q |
| |
|
||||||| ||||||| ||||||| ||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
23389386 |
ttgaaattaataaatggataaaaattagtttaggccataccttctattggcaaatattttaa |
23389325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 23389040 - 23388997
Alignment:
| Q |
143 |
aatatgtaacaatgagaatgagtgtcgtcaaaagtatcattgac |
186 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||| |||||| |
|
|
| T |
23389040 |
aatatgtaacaatgagaatgagtgtggtcaaaggtattattgac |
23388997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 276 - 819
Target Start/End: Complemental strand, 13824 - 13281
Alignment:
| Q |
276 |
agtgctttttcctctatatcttcttctgatgtggggcctccgaaaaaatatgacgtttttcttagctttcgaggcgaggatacccgcagaaacttcacga |
375 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||| | |
|
|
| T |
13824 |
agtgctttttcctccatatcttcttctgatgtggtgccaccgaaaaaatatgatgtttttcttagctttcgaggtgaggatattcgcagaaacttcagaa |
13725 |
T |
|
| Q |
376 |
gccatctttatgatgctctaagccgaaagacagttgaaacctttatagacaacaatgagcttcaaaaaggagatgagatctcgccagcactcatcaaagc |
475 |
Q |
| |
|
||||||||||||||||||| | |||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
13724 |
gccatctttatgatgctctgatccgaaagaaaattgaaacctttatggacaacaatgagcttcaaaaaggagatgagatctcggcagcactcatcaaagc |
13625 |
T |
|
| Q |
476 |
cattgaggagtcacatgcatctattgtcattttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaa |
575 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
13624 |
cattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagaaa |
13525 |
T |
|
| Q |
576 |
tatatggaacaaatcgtgatacctgttttttacaacatagatccatcacatgtgaggaagcaaatcgggagtttcaagcaagcctttgcaaaacataagc |
675 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||| || ||||||||||||| | || |||| | |||||||||||||||||||||||| |
|
|
| T |
13524 |
tatatggaacagattgtgatacctgttttttacaacatagatccagcaaatgtgaggaagcagactggaagttaccagcaagcctttgcaaaacataagc |
13425 |
T |
|
| Q |
676 |
gagatttgaagcacaatattgacaagttggagaaatggaaatctgctctcaccgaggcagctaatttagttggttgggactctcgaaattataggtgagt |
775 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
13424 |
gagatttgaagcacaataacgataagttggagaaatggaaagctgctctcactgatgcagctaatttagttggttgggactctcgaaattataggtaagt |
13325 |
T |
|
| Q |
776 |
aaaacgaactatcaagcattctacatgtcatgacttgtatgttt |
819 |
Q |
| |
|
||||||||||||| | | ||| ||||||||||||||||| |||| |
|
|
| T |
13324 |
aaaacgaactatccaactttccacatgtcatgacttgtaagttt |
13281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 16168 - 16086
Alignment:
| Q |
20 |
tcaaattgatcatagaatttgaaatcaataaa-----ttgataaaattagtttaggcc--ataccttctgttcgcaaatattt |
95 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
16168 |
tcaaattgatcatagaatttcaaatcaataaaataaattgataaaattagtttaggccatataccttctgttggcaaatattt |
16086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570 (Bit Score: 379; Significance: 0; HSPs: 4)
Name: scaffold0570
Description:
Target: scaffold0570; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 266 - 836
Target Start/End: Original strand, 9506 - 10076
Alignment:
| Q |
266 |
gaaaatgagtagtgctttttcctctatatcttcttctgatgtggggcctccgaaaaaatatgacgtttttcttagctttcgaggcgaggatacccgcaga |
365 |
Q |
| |
|
||||||||| |||||| ||||||||||| |||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |||||||| |||||| |
|
|
| T |
9506 |
gaaaatgagcagtgctatttcctctatagtttcttctgatgtggtgcctcagaaaaaatatgacatttttcttagctttcgaggtgaggatactcgcaga |
9605 |
T |
|
| Q |
366 |
aacttcacgagccatctttatgatgctctaagccgaaagacagttgaaacctttatagacaacaatgagcttcaaaaaggagatgagatctcgccagcac |
465 |
Q |
| |
|
||||| || |||||||||||||||||||| |||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9606 |
aacttaacaagccatctttatgatgctctgagccgaaagaaaattgaaacctttatggacaacaatgagcttcaaaaaggagatgagatctcggcagcac |
9705 |
T |
|
| Q |
466 |
tcatcaaagccattgaggagtcacatgcatctattgtcattttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttga |
565 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9706 |
tcatcaaagccattgaggagtcacatgcatctattgtaatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttga |
9805 |
T |
|
| Q |
566 |
atgcaagcaatatatggaacaaatcgtgatacctgttttttacaacatagatccatcacatgtgaggaagcaaatcgggagtttcaagcaagcctttgca |
665 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||| |||||||| || ||||||| ||||| | || |||| | |||||||||||| | |
|
|
| T |
9806 |
atgcaagcaatatatggaacagatggtgatacctgttttttacaacttagatccagcaaatgtgagaaagcagactggaagttacgagcaagcctttgaa |
9905 |
T |
|
| Q |
666 |
aaacataagcgagatttgaagcacaatattgacaagttggagaaatggaaatctgctctcaccgaggcagctaatttagttggttgggactctcgaaatt |
765 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||| |||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9906 |
aaacataagcgagatttgaagagcaataatgacaagttgaagaactggaaagccgctctcaccgaggcagctaatttagttggttgggactctcgaaatt |
10005 |
T |
|
| Q |
766 |
ataggtgagtaaaacgaactatcaagcattctacatgtcatgacttgtatgtttccaaaattataaataaa |
836 |
Q |
| |
|
|||||| |||||||||||||||| | | ||| ||||||||||||||||| |||| |||||| ||| |||| |
|
|
| T |
10006 |
ataggtaagtaaaacgaactatccaactttccacatgtcatgacttgtaagtttaaaaaattctaagtaaa |
10076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 352 - 632
Target Start/End: Original strand, 3153 - 3437
Alignment:
| Q |
352 |
aggatacccgcagaaacttcacgagccatctttatgatgctctaagccgaaagacagttgaaacctttatagacaacaatgagcttcaaaaaggagatga |
451 |
Q |
| |
|
||||||| ||||||||| |||| ||||||||||| |||| || || | |||| | |||||||||| |||||||||| ||||||| ||||| ||||||| |
|
|
| T |
3153 |
aggatactcgcagaaacctcacaagccatctttacgatgttccaaaatgcaagaaacttgaaaccttcatagacaaca-tgagcttaaaaaaagagatga |
3251 |
T |
|
| Q |
452 |
gatctcgccagc-actcatcaaagccattgaggagtcac----atgcatctattgtcattttctcagaaaactatgcttcctcaaaatggtgcttaaatg |
546 |
Q |
| |
|
||||| ||||| | ||||||||||||||||||||| |||||| || ||| || |||||| |||||||||||||||||||||| ||||| |||| |
|
|
| T |
3252 |
tatctcaccagccagccatcaaagccattgaggagtccgcatgatgcatttactgttatcttctcataaaactatgcttcctcaaaatgatgcttgaatg |
3351 |
T |
|
| Q |
547 |
agctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgtgatacctgttttttacaacatagatccatcacatgtgagg |
632 |
Q |
| |
|
|||||||||||||| | |||||| || ||||||||||||| || || || ||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
3352 |
agctcaaaaagattatagaatgctagaaatatatggaacagattgtaatgtctgttttttacgacatagatccatcgcatgtgagg |
3437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 656 - 726
Target Start/End: Original strand, 3472 - 3542
Alignment:
| Q |
656 |
agcctttgcaaaacataagcgagatttgaagcacaatattgacaagttggagaaatggaaatctgctctca |
726 |
Q |
| |
|
|||||| | |||||||| |||||| |||||||||||| |||||||||| ||||||||||| ||| ||||| |
|
|
| T |
3472 |
agccttcgaaaaacataggcgagaactgaagcacaataatgacaagttgcagaaatggaaagctggtctca |
3542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 846 - 907
Target Start/End: Original strand, 10156 - 10217
Alignment:
| Q |
846 |
catattcgtgaccggaaatgaacatagattttagaaaatgacagcaacaaataattttagaa |
907 |
Q |
| |
|
|||||| |||| ||||||||||||| |||||||||||||| ||| | |||||||||||||| |
|
|
| T |
10156 |
catatttgtgattggaaatgaacataaattttagaaaatgaaagctaaaaataattttagaa |
10217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 1e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 294 - 689
Target Start/End: Original strand, 12894500 - 12894892
Alignment:
| Q |
294 |
tcttcttctgatgtggggcctccgaaaaaatatgacgtttttcttagctttcgaggcgaggatacccgcagaaacttcacgagccatctttatgatgctc |
393 |
Q |
| |
|
|||||||||| |||| |||| |||||| | ||| |||||| | |||||||| || |||||||| || |||| |||||| || ||||||||||||||| |
|
|
| T |
12894500 |
tcttcttctgcggtggcgcctttgaaaaagtctgatgtttttataagctttcgcggtgaggatactcgtagaagcttcacaagtcatctttatgatgctt |
12894599 |
T |
|
| Q |
394 |
taagccgaaagacagttgaaacctttatagacaacaatgagcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatgc |
493 |
Q |
| |
|
| ||| |||| |||| |||||||||||| |||||||||||||||||||||||||||| || ||||| | ||||||||||||||||||||| |||| |
|
|
| T |
12894600 |
tgagc---aagaaagttataacctttatagatgacaatgagcttcaaaaaggagatgagatatcctcagcattgatcaaagccattgaggagtcatatgc |
12894696 |
T |
|
| Q |
494 |
atctattgtcattttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatat-atggaacaaatcgt |
592 |
Q |
| |
|
|||||||||||| |||||| | |||||||||||||||||||||| || ||||| ||| |||||||| ||||||||| || || |||| |||||| || |
|
|
| T |
12894697 |
atctattgtcatcttctcaatagactatgcttcctcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagatcatgg-acaaattgt |
12894795 |
T |
|
| Q |
593 |
gatacctgttttttacaacatagatccatcacatgtgaggaagcaaatcgggagtttcaagcaagcctttgcaaaacataagcgagatttgaagcac |
689 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||| |||| ||||| | || ||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
12894796 |
gatacctgttttttacgaaatagatccatcacatgtgaggaatcaaacagggaggtacagtcaagcctttgcaaaacacgagcaagatttgaagcac |
12894892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 494 - 550
Target Start/End: Complemental strand, 14639021 - 14638965
Alignment:
| Q |
494 |
atctattgtcattttctcagaaaactatgcttcctcaaaatggtgcttaaatgagct |
550 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||| |||||||||| ||||||| |
|
|
| T |
14639021 |
atctattgttgttttctcagaaaactatgcatcctcaacatggtgcttagatgagct |
14638965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 108; Significance: 9e-54; HSPs: 3)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 422 - 557
Target Start/End: Original strand, 167552 - 167687
Alignment:
| Q |
422 |
agacaacaatgagcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatgcatctattgtcattttctcagaaaactat |
521 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
167552 |
agacaacactgagcttcaaaaaggagatgagatctcgccaacactcatcaaagccattgaggagtaacatgcatctattgtcatcttctcagaaaactat |
167651 |
T |
|
| Q |
522 |
gcttcctcaaaatggtgcttaaatgagctcaaaaag |
557 |
Q |
| |
|
||||||||| |||||||||| |||||| |||||||| |
|
|
| T |
167652 |
gcttcctcataatggtgcttgaatgagatcaaaaag |
167687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 259 - 394
Target Start/End: Original strand, 167416 - 167548
Alignment:
| Q |
259 |
ctgcgcagaaaatgagtagtgctttttcctctatatcttcttctgatgtggggcctccgaaaaaatatgacgtttttcttagctttcgaggcgaggatac |
358 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| ||||| || |||||||||||| |||||||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
167416 |
ctgcgcagaaaatgagcagtgttttttcctctgtatctact---gatgtggggcctaagaaaaaatatgatgtgtttcttagctttcgaggtgaggatac |
167512 |
T |
|
| Q |
359 |
ccgcagaaacttcacgagccatctttatgatgctct |
394 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||| |
|
|
| T |
167513 |
tcgcagaaacttcacaagccatctttatgattctct |
167548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 167242 - 167304
Alignment:
| Q |
41 |
aaatcaataaattgataaaattagtttaggccataccttctgttcgcaaatattttaattaaa |
103 |
Q |
| |
|
||||||||||||||| | | ||||||||||||||||||| |||| |||||||||||| ||||| |
|
|
| T |
167242 |
aaatcaataaattgacagacttagtttaggccataccttttgttggcaaatattttatttaaa |
167304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 8e-39; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 417 - 667
Target Start/End: Complemental strand, 16124989 - 16124739
Alignment:
| Q |
417 |
tttatagacaacaatgagcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatgcatctattgtcattttctcagaaa |
516 |
Q |
| |
|
||||||||| ||| |||||| ||||||||||||||||||| ||||||| |||||||||||||| |||||| ||||||||| ||||| || |||||| |
|
|
| T |
16124989 |
tttatagacgacagcgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaag |
16124890 |
T |
|
| Q |
517 |
actatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgtgatacctgttttttacaacataga |
616 |
Q |
| |
|
|||||||||| ||||||||||| || ||||| ||| |||||||| ||||||||| || ||| | |||||| |||||||| |||| || | ||||| |
|
|
| T |
16124889 |
actatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaataga |
16124790 |
T |
|
| Q |
617 |
tccatcacatgtgaggaagcaaatcgggagtttcaagcaagcctttgcaaa |
667 |
Q |
| |
|
|||||| |||||||| || || || ||||||| | ||||||||||||||| |
|
|
| T |
16124789 |
tccatctcatgtgagaaatcagattgggagttacgggcaagcctttgcaaa |
16124739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 417 - 631
Target Start/End: Original strand, 16334662 - 16334876
Alignment:
| Q |
417 |
tttatagacaacaatgagcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatgcatctattgtcattttctcagaaa |
516 |
Q |
| |
|
|||||||| |||| |||||| ||||||||||||||||||| ||||||| |||||||||||||| |||||| ||||||||| ||||| || ||||||| |
|
|
| T |
16334662 |
tttatagatgacaacgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaa |
16334761 |
T |
|
| Q |
517 |
actatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgtgatacctgttttttacaacataga |
616 |
Q |
| |
|
|||||||||| ||||||||||| || ||||| ||| |||||||| ||||||||| || ||| | |||||| |||||||| |||| || | ||||| |
|
|
| T |
16334762 |
actatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaataga |
16334861 |
T |
|
| Q |
617 |
tccatcacatgtgag |
631 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
16334862 |
tccatctcatgtgag |
16334876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 417 - 631
Target Start/End: Complemental strand, 16127142 - 16126928
Alignment:
| Q |
417 |
tttatagacaacaatgagcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatgcatctattgtcattttctcagaaa |
516 |
Q |
| |
|
||||||||| ||| |||||| ||||||||||||||||||| ||||||| |||||||||||||| |||||| ||||||||| ||||| || |||||| |
|
|
| T |
16127142 |
tttatagacgacagcgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaag |
16127043 |
T |
|
| Q |
517 |
actatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacaaatcgtgatacctgttttttacaacataga |
616 |
Q |
| |
|
|||||||||| ||||||||||| || ||||| ||| |||||||| ||||||||| || ||| | |||||| |||||||| |||| || | ||||| |
|
|
| T |
16127042 |
actatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaataga |
16126943 |
T |
|
| Q |
617 |
tccatcacatgtgag |
631 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
16126942 |
tccatctcatgtgag |
16126928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 494 - 550
Target Start/End: Original strand, 178271 - 178327
Alignment:
| Q |
494 |
atctattgtcattttctcagaaaactatgcttcctcaaaatggtgcttaaatgagct |
550 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||| |||||||||| ||||||| |
|
|
| T |
178271 |
atctattgttgttttctcagaaaactatgcatcctcaacatggtgcttagatgagct |
178327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 505 - 538
Target Start/End: Complemental strand, 6097935 - 6097902
Alignment:
| Q |
505 |
ttttctcagaaaactatgcttcctcaaaatggtg |
538 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
6097935 |
ttttctcagaaaactatgcttcctcaaaatggtg |
6097902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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