View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4354-Insertion-4 (Length: 746)
Name: NF4354-Insertion-4
Description: NF4354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4354-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 10 - 355
Target Start/End: Original strand, 45341741 - 45342084
Alignment:
| Q |
10 |
acaaacaaatttgtaatgattaagtttaaaaggtactagaattaaacaagctaaggaaagtaaaaattaccagaatgaggaagaagtttacgatgaggtg |
109 |
Q |
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| T |
45341741 |
acaaacaaatttgtaatgattaagtttaaaaggtactagaattaaacaag-----gaaagtaaaaattaccagaatgaggaagaagtttacgatgaggtg |
45341835 |
T |
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| Q |
110 |
tatgaatgagtgtgtannnnnnnnnnnnnnnnnn---accttcttcctcaaaccccaacaaatacgacaaagacatcaacgttccagtacgagccccacc |
206 |
Q |
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| T |
45341836 |
tatgaatgagtgtgtagttgttgttgttgttgtcgataccttcttcctcaaaccccaacaaatacgacaaagacatcaacgttccagtacgagccccacc |
45341935 |
T |
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| Q |
207 |
accaccaccaaatcccaatcctgtagtaacggtacgcataacgacaaaaacaaacaaatgttcaatatacgattcaacaagcatacatacgcacataacc |
306 |
Q |
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| T |
45341936 |
accaccaccaaatcccaatcctgtaataacggtacgcataacgacaaaaacaaacaaatgttcaatatacgattcaacaaacatacatacgcacataacc |
45342035 |
T |
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| Q |
307 |
gaaaaaatagcataacaacaccactacactgaaacaacgattcaatcat |
355 |
Q |
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| T |
45342036 |
gaaaaaatagcataacaacaccactacactgaaacaacgattcaatcat |
45342084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 572 - 647
Target Start/End: Original strand, 45342337 - 45342415
Alignment:
| Q |
572 |
tgtgtcataatatatatatcacatatcacatcatgtgata---gtgaaaatgaaaacaaagaataaccgtcgattttgt |
647 |
Q |
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| T |
45342337 |
tgtgtcataatatatatatcacacatcacatcatgtgatattagtgaaaatgaaaacaaagaataaccgtcgattttgt |
45342415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 350 - 394
Target Start/End: Original strand, 45342116 - 45342160
Alignment:
| Q |
350 |
aatcatagcaatagcaatgaatctacaaattaacagtgatttttg |
394 |
Q |
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| T |
45342116 |
aatcatagcaatagcaatgaatctacaaattaacagtgatttttg |
45342160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 448 - 507
Target Start/End: Original strand, 45342214 - 45342272
Alignment:
| Q |
448 |
gtgatgacggtgaaaaggacgataacacgttgcggttccatgtgaaggtttcttagagta |
507 |
Q |
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| T |
45342214 |
gtgatgacggtgacaatgacgacaacacgttgcggttccatgtgaagg-ttcttagagta |
45342272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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