View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4354-Insertion-5 (Length: 512)

Name: NF4354-Insertion-5
Description: NF4354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4354-Insertion-5
NF4354-Insertion-5
[»] chr5 (8 HSPs)
chr5 (295-512)||(18187177-18187394)
chr5 (42-261)||(18187429-18187648)
chr5 (8-233)||(18192458-18192673)
chr5 (295-441)||(18196796-18196939)
chr5 (295-441)||(18192263-18192405)
chr5 (111-207)||(18229104-18229200)
chr5 (42-234)||(18197010-18197205)
chr5 (295-420)||(18228911-18229028)


Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 295 - 512
Target Start/End: Complemental strand, 18187394 - 18187177
Alignment:
Q  295 ggaggtacaatggtttatgtgtttatgtgaagaggttttataaaggtcaaaaagttagaagaaagccaagccacatcagaaaagggaaagttttgtgagc 394  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18187394 ggaggtacaatggtttatgtgtttatgtgaagaggttttatataggtcaaaaagttagaagaaagccaagccacatcagaaaagggaaagttttgtgagc 18187295  T
Q  395 cacaaattgttttggcctatgagattttagtgttcagctggattcactcacacgtatgaaaaatgtgctgttctattctcttttcacccatccttttcaa 494  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18187294 cacaaattgttttggcctatgagatcttagtgttcagctggattcactcacacgtatgaaaaatgtgctgttctattctcttttcacctatccttttcaa 18187195  T
Q  495 cttttgcctttttgtcaa 512  Q
    ||||||||||||||||||    
T  18187194 cttttgcctttttgtcaa 18187177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 42 - 261
Target Start/End: Complemental strand, 18187648 - 18187429
Alignment:
Q  42 gaagatgaagataaagatgaatgaagactatgatcagataaatcttcatgagcaaaaggaggagaaaattctgaggaagaatcattggtaggaacatcgg 141  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  18187648 gaagatgaagataaagatgaatgaagactatgatcagagaaatcttcatgagcaagatgaggagaaaattctgaggaagaatcattggtaggaacatcgg 18187549  T
Q  142 tattgtgtttttgaaaaatggttctcccgaaaagcttcatggttgaatcattagtcatctcaggtatatatgttgaagaagtttttgttgttgtttcttt 241  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18187548 tgttgtgtttttgaaaaatggttctcccgaaaagcttcatggttgaatcattagtcatctcaggtatatatgttgaagaagtttttgttgttgtttcttt 18187449  T
Q  242 gttcttgttacttgataatg 261  Q
    ||||  ||||||||||||||    
T  18187448 gttcaggttacttgataatg 18187429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 18192673 - 18192458
Alignment:
Q  8 atatctctttggatcatgttcgtttggagaagatgaagatgaagataaagatgaatgaagactatgatcagataaatcttcatgagcaaaaggaggagaa 107  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||    
T  18192673 atatctctttgaatcatgttcgtttggagaagatgaagatgaagataaagatgaatgaagactatgatcagagaaatcttcatgaccaagaggaggagaa 18192574  T
Q  108 aattctgaggaagaatcattggtaggaacatcggtattgtgtttttgaaaaatggttctcccgaaaagcttcatggttgaatcattagtca--tctcagg 205  Q
    || || |||||| |||            | ||||| ||| || |||||||||| ||||||||||||||||| |||||||||||||||||||  |||| ||    
T  18192573 aactccgaggaataat------------cgtcggtgttgcgtgtttgaaaaattgttctcccgaaaagctttatggttgaatcattagtcatctctctgg 18192486  T
Q  206 tatatatgttgaagaagtttttgttgtt 233  Q
    ||||||||||||||||||||||||||||    
T  18192485 tatatatgttgaagaagtttttgttgtt 18192458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 295 - 441
Target Start/End: Complemental strand, 18196939 - 18196796
Alignment:
Q  295 ggaggtacaatggtttatgtgtttatgtgaagaggttttataaaggtcaaaaagttagaagaaagccaagccacatcagaaaagggaaagttttgtgagc 394  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    |||||| | ||||||||||||||| | |||||||||||||    
T  18196939 ggaggtacaatggtttatgtgtttctgtgaagaagttttataaaggtcaaaaagtt---ggaaagcaatgccacatcagaaaagtggaagttttgtgagc 18196843  T
Q  395 cacaaattgttttggcctatgagattttagtgttcagctggattcac 441  Q
    |||||||| || |||||| |||||| ||||||| ||| |||||||||    
T  18196842 cacaaatttttgtggcctgtgagatcttagtgtgcagatggattcac 18196796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 295 - 441
Target Start/End: Complemental strand, 18192405 - 18192263
Alignment:
Q  295 ggaggtacaatggtttatgtgtttatgtgaagaggttttataaaggtcaaaaagttagaagaaagccaagccacatcagaaaagggaaagttttgtgagc 394  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    |||||| | ||||||||||||||| | |||||||||||||    
T  18192405 ggaggtactatggtttatgtgtttatgtgaagaagttttataaaggtcaaaaagtt---ggaaagcaatgccacatcagaaaagtggaagttttgtgagc 18192309  T
Q  395 cacaaattgttttggcctatgagattttagtgttcagctggattcac 441  Q
    ||||||||| | ||| || |||||| ||||||| |||||||||||||    
T  18192308 cacaaattgctgtgg-ctgtgagatcttagtgtgcagctggattcac 18192263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 18229200 - 18229104
Alignment:
Q  111 tctgaggaagaatcattggtaggaacatcggtattgtgtttttgaaaaatggttctcccgaaaagcttcatggttgaatcattagtcatctcaggta 207  Q
    ||||||||| |||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18229200 tctgaggaaaaatcattggtagtaacatcggtgttgtgtgtttgaaaaatggttctcccgaaaagctttatggttgaatcattagtcatctcaggta 18229104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 42 - 234
Target Start/End: Complemental strand, 18197205 - 18197010
Alignment:
Q  42 gaagatgaagataaagatgaatgaagactatgatcagataaatcttcatgagcaaaaggaggagaaaattctga------ggaagaatcattggtaggaa 135  Q
    ||||| ||||| | |||||||||||||||||||| ||||||||||||||||| ||   | ||||||||||||||      |||||||||||||||||  |    
T  18197205 gaagaggaagacatagatgaatgaagactatgatgagataaatcttcatgaggaa---gcggagaaaattctgactctgaggaagaatcattggtagata 18197109  T
Q  136 catcggtattgtgtttttgaaaaatggttctcccgaaaagcttcatggttgaatcattagtcatctcaggtatatatgttgaagaagtttttgttgttg 234  Q
    ||||| | |||||| ||  |||||| |||||||| |||||| | |||||||||| |||| ||||||| ||||||| ||| ||| |||||||||||||||    
T  18197108 catcgatgttgtgtgttataaaaatcgttctcccaaaaagcgttatggttgaattattaatcatctcgggtatatctgtagaataagtttttgttgttg 18197010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 295 - 420
Target Start/End: Complemental strand, 18229028 - 18228911
Alignment:
Q  295 ggaggtacaatggtttatgtgtttatgtgaaga---ggttttataaaggtcaaaaagttagaagaaagccaagccacatcagaaaagggaaagttttgtg 391  Q
    ||||||||||||||||  |||||||||||||||   ||||| |||||||||||||||||||||        ||||||||  |||||||||||||||||||    
T  18229028 ggaggtacaatggttt--gtgtttatgtgaagaagaggtttcataaaggtcaaaaagttagaa--------agccacatacgaaaagggaaagttttgtg 18228939  T
Q  392 agccacaaattgttttggcctatgagatt 420  Q
    ||||||||||| |||||||||||||||||    
T  18228938 agccacaaatt-ttttggcctatgagatt 18228911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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