View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4354-Insertion-6 (Length: 484)
Name: NF4354-Insertion-6
Description: NF4354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4354-Insertion-6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 8 - 484
Target Start/End: Original strand, 54012652 - 54013128
Alignment:
| Q |
8 |
atatcaaccatatgagccaagaaaacaaaatgtggtaccgtagtgccatttcctgcattgataaagattcaatacaactttattatcataatgtggatta |
107 |
Q |
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| T |
54012652 |
atatcaaccatatgagccaagaaaacaaagcgtggtaccgtagcgccatttcctgcattgataaagattcaatacaactttattatcataatgtggatta |
54012751 |
T |
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| Q |
108 |
ttaatatttagatgaaaatagtgaattaatcataggacaagttaattacctgaacctgaacttaatgtttcgtgtaatgtccatgaatttttgttaagag |
207 |
Q |
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| T |
54012752 |
ttagtatttagatgaaaatagtgaattaatcataggacaagttaattacctgaacctgaacttaatgtttcgtgtaatgtccatgaatttttgttaagag |
54012851 |
T |
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| Q |
208 |
tattgcctaatgcgtcaaagagaggcataaagaggcagaaattggtgtccttttcagtgtggtgaagattgtgatatctgcatagcatagaaaaagacat |
307 |
Q |
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| T |
54012852 |
tattgcctaatgcgtcaaagagaggcataaagaggcagaaattggtgtccttttcagtgtggtgaagattgtgatatctgcatagcatagaaaaagacat |
54012951 |
T |
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| Q |
308 |
gaatcaatacacattggttggaccactatatagataaatgcatgctcatttctaatgattttcttctgtcttgccagttcaacacaaaaggatgaaaggt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54012952 |
gaatcaatacacattggttggaccactatatagataaatgcaggctcatttctaatgattttcttctgtcttgccagttcaacacaaaaggatgaaaggt |
54013051 |
T |
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| Q |
408 |
agataaatcatgcaggggaaatttaataggcttctagcaatatgaactcaattggtccaccaaaaatttaacaatct |
484 |
Q |
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| T |
54013052 |
agataaatcatgcaggggaaatttaataggcttctagcaatatgaactcaattggtccaccaaaaatttaacaatct |
54013128 |
T |
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