View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4354-Insertion-8 (Length: 453)

Name: NF4354-Insertion-8
Description: NF4354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4354-Insertion-8
NF4354-Insertion-8
[»] chr4 (7 HSPs)
chr4 (8-453)||(33814598-33815043)
chr4 (376-453)||(33810057-33810134)
chr4 (156-218)||(11307334-11307396)
chr4 (156-218)||(47680673-47680735)
chr4 (141-187)||(38534496-38534542)
chr4 (145-218)||(20090545-20090618)
chr4 (156-184)||(47681223-47681251)
[»] chr5 (2 HSPs)
chr5 (143-215)||(28296058-28296130)
chr5 (165-237)||(27856164-27856234)
[»] chr1 (5 HSPs)
chr1 (109-261)||(11199934-11200082)
chr1 (157-219)||(26231700-26231762)
chr1 (118-237)||(38637545-38637662)
chr1 (147-237)||(11766012-11766100)
chr1 (144-183)||(48273306-48273345)
[»] chr2 (3 HSPs)
chr2 (141-220)||(14571878-14571957)
chr2 (131-229)||(8252608-8252704)
chr2 (158-218)||(19548196-19548256)
[»] chr3 (6 HSPs)
chr3 (143-229)||(43407669-43407755)
chr3 (143-208)||(54328774-54328839)
chr3 (156-218)||(40196155-40196217)
chr3 (156-218)||(43481640-43481702)
chr3 (165-218)||(43978628-43978681)
chr3 (158-218)||(23161956-23162016)
[»] chr8 (5 HSPs)
chr8 (147-206)||(42115199-42115258)
chr8 (125-230)||(5073024-5073127)
chr8 (166-231)||(11806729-11806794)
chr8 (156-237)||(5981486-5981565)
chr8 (157-197)||(12156399-12156439)
[»] chr7 (3 HSPs)
chr7 (165-218)||(11776400-11776453)
chr7 (146-218)||(33730086-33730158)
chr7 (135-178)||(33730413-33730456)
[»] scaffold0039 (1 HSPs)
scaffold0039 (156-230)||(29063-29137)


Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 8 - 453
Target Start/End: Original strand, 33814598 - 33815043
Alignment:
8 tttttaacgtcctataataggatccaaaacaggatccagctcttgctcccctaccaagttgaactaggcatctgataccacttgttggggagtctgggta 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
33814598 tttttaacgtcctataataggatccaaaacaggatccagctcttgctcccctaccaagttgaactagggatctgataccacttgttggggagtctgggta 33814697  T
108 agtcgggaacaacaacagggcaaaatgttccaaggccacaagagagggagacaccatatctccacccaaaaccttaatgtattaggtatacgggtcacct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33814698 agtcgggaacaacaacagggcaaaatgttccaaggccacaagagagggagacaccatatctccacccaaaaccttaatgtattaggtatacgggtcacct 33814797  T
208 ctcttatatatatccaacattttatccattgacatgcgatgtgagacttgaccaacttacacttgtactcaacatgaagtctctcatcccaaccatgttt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33814798 ctcttatatatatccaacattttatccattgacatgcgatgtgagacttgaccaacttacacttgtactcaacatgaagtctctcatcccaaccatgttt 33814897  T
308 tctcatctcaaactcgagacgttgcttaagagatccaagtctaatttagtatattgaagtatttgaagaaagaattaggtacctatgctcaagtcatatc 407  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33814898 tctcatctcaaactcgagacgttgcttaagagatccaaatctaatttagtatattgaagtatttgaagaaagaattaggtacctatgctcaagtcatatc 33814997  T
408 cacggtttttgagctctctatattcctgacaaagagcacaagtttc 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
33814998 cacggtttttgagctctctatattcctgacaaagagcacaagtttc 33815043  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 376 - 453
Target Start/End: Original strand, 33810057 - 33810134
Alignment:
376 aaagaattaggtacctatgctcaagtcatatccacggtttttgagctctctatattcctgacaaagagcacaagtttc 453  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
33810057 aaagaattaggtgcctatgctcaagtcatatccacggtttttgagttctctatattcctgacaaagagcacaagtttc 33810134  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 11307334 - 11307396
Alignment:
156 agacaccatatctccacccaaaaccttaatgtattaggtatacgggtcacctctcttatatat 218  Q
    |||||||| ||||||||||||||| |||| | || ||||||||| ||| ||||||||||||||    
11307334 agacaccacatctccacccaaaacattaaggcatcaggtatacgtgtcccctctcttatatat 11307396  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 47680735 - 47680673
Alignment:
156 agacaccatatctccacccaaaaccttaatgtattaggtatacgggtcacctctcttatatat 218  Q
    |||||||| |||||||||||||||||||| | || ||||||| ||||| |||||| |||||||    
47680735 agacaccacatctccacccaaaaccttaaggcatcaggtatatgggtctcctctcatatatat 47680673  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 38534542 - 38534496
Alignment:
141 ggccacaagagagggagacaccatatctccacccaaaaccttaatgt 187  Q
    |||||||| |||||||| ||| | |||||||||||||||||||||||    
38534542 ggccacaaaagagggaggcactaaatctccacccaaaaccttaatgt 38534496  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 20090545 - 20090618
Alignment:
145 acaagagagggagacaccatatctccacccaaaaccttaatgtattaggtatacgggtcacctctcttatatat 218  Q
    ||||||| ||||||||| |  || ||| |||||||| ||||| ||||||||||   ||||||||||||||||||    
20090545 acaagagggggagacacgacgtcgccatccaaaaccctaatgcattaggtatataagtcacctctcttatatat 20090618  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 184
Target Start/End: Complemental strand, 47681251 - 47681223
Alignment:
156 agacaccatatctccacccaaaaccttaa 184  Q
    |||||||||||||||||||||||||||||    
47681251 agacaccatatctccacccaaaaccttaa 47681223  T

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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 28296058 - 28296130
Alignment:
143 ccacaagagagggagacaccatatctccacccaaaaccttaatgtattaggtatacgggtcacctctcttata 215  Q
    ||||||||||||||||||||| ||||||||||||||||||||   |||||||||| |||||||||||||||||    
28296058 ccacaagagagggagacaccacatctccacccaaaaccttaagagattaggtatatgggtcacctctcttata 28296130  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 27856234 - 27856164
Alignment:
165 atctccacccaaaaccttaatgtattaggtatacgggtcacctctcttatatatatccaacattttatccatt 237  Q
    ||||||||||||||| |||| | |||||||||| | | ||||||||||||  ||||||||||||||| |||||    
27856234 atctccacccaaaactttaaggcattaggtatatgagccacctctcttat--atatccaacattttacccatt 27856164  T

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Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 109 - 261
Target Start/End: Complemental strand, 11200082 - 11199934
Alignment:
109 gtcgggaacaacaacagggcaaaatgttccaaggccacaagagagggagacaccatatctccacccaaaaccttaatgtattaggtatacgggtcacctc 208  Q
    |||||||||||||||| | |||  || |||| | |||||| |||||||||| ||| |||||||||||||||||||| | |||||| ||| | ||||||||    
11200082 gtcgggaacaacaacaagtcaa--tgatccaggaccacaacagagggagacgccacatctccacccaaaaccttaaggcattaggcatatgagtcacctc 11199985  T
209 tcttatatatatccaacattttatccattgacatgcgatgtgagacttgacca 261  Q
    ||||||  ||||||||||||||| | ||| | | || ||||||||||| ||||    
11199984 tcttat--atatccaacattttacctattcataggcaatgtgagacttaacca 11199934  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 26231700 - 26231762
Alignment:
157 gacaccatatctccacccaaaaccttaatgtattaggtatacgggtcacctctcttatatata 219  Q
    ||||||| |||||||||||||||||||| ||| | |||||| ||||| |||||||||||||||    
26231700 gacaccacatctccacccaaaaccttaaggtaattggtatatgggtcccctctcttatatata 26231762  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 237
Target Start/End: Complemental strand, 38637662 - 38637545
Alignment:
118 aacaacagggcaaaatgttccaaggccacaagagagggagacaccatatctccacccaaaaccttaatgtattaggtatacgggtcacctctcttatata 217  Q
    ||||||||| | ||||| |||| | | ||||||||||||||  ||  |||||||||||| ||||||| | ||||||||||  ||||||||| ||  ||||    
38637662 aacaacaggcccaaatgctccaggactacaagagagggagatgccgcatctccacccaataccttaaggcattaggtatataggtcacctcact--tata 38637565  T
218 tatccaacattttatccatt 237  Q
    |  |||||||||||||||||    
38637564 tggccaacattttatccatt 38637545  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 237
Target Start/End: Original strand, 11766012 - 11766100
Alignment:
147 aagagagggagacaccatatctccacccaaaaccttaatgtattaggtatacgggtcacctctcttatatatatccaacattttatccatt 237  Q
    ||||||||||||| ||| |||||||||||||||||||| | |||||||  |  ||||| ||||||  |||| ||||||||||||| |||||    
11766012 aagagagggagacgccacatctccacccaaaaccttaaggcattaggttaataggtcaactctct--tataaatccaacattttacccatt 11766100  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 183
Target Start/End: Complemental strand, 48273345 - 48273306
Alignment:
144 cacaagagagggagacaccatatctccacccaaaacctta 183  Q
    |||||||||||||||| |||||||||||||||||| ||||    
48273345 cacaagagagggagacgccatatctccacccaaaaactta 48273306  T

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Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 141 - 220
Target Start/End: Original strand, 14571878 - 14571957
Alignment:
141 ggccacaagagagggagacaccatatctccacccaaaaccttaatgtattaggtatacgggtcacctctcttatatatat 220  Q
    |||||||||||||||||| |||| ||||||| ||||||||||||   | |||| |||||||||| |||||||||||||||    
14571878 ggccacaagagagggagaaaccacatctccaaccaaaaccttaaaccaataggaatacgggtcatctctcttatatatat 14571957  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 229
Target Start/End: Original strand, 8252608 - 8252704
Alignment:
131 aatgttccaaggccacaagagagggagacaccatatctccacccaaaaccttaatgtattaggtatacgggtcacctctcttatatatatccaacattt 229  Q
    |||||||||||  || ||||||||| ||||||| ||||||| ||||||| |||| |  ||||||||||| || ||||||||||||  ||||||||||||    
8252608 aatgttccaagatcataagagagggcgacaccacatctccatccaaaactttaaggcgttaggtatacgagttacctctcttata--tatccaacattt 8252704  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 19548256 - 19548196
Alignment:
158 acaccatatctccacccaaaaccttaatgtattaggtatacgggtcacctctcttatatat 218  Q
    |||||| ||||||||||||||||||||   ||||| |||| ||||| ||||||||||||||    
19548256 acaccacatctccacccaaaaccttaagacattagatatatgggtctcctctcttatatat 19548196  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 143 - 229
Target Start/End: Complemental strand, 43407755 - 43407669
Alignment:
143 ccacaagagagggagacaccatatctccacccaaaaccttaatgtattaggtatacgggtcacctctcttatatatatccaacattt 229  Q
    |||||||| |||||||| ||  |||||||||||||||||||    |||||||||| | ||||||| |||||||||||||||||||||    
43407755 ccacaagatagggagactccggatctccacccaaaaccttacgtcattaggtatatgagtcacctttcttatatatatccaacattt 43407669  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 54328774 - 54328839
Alignment:
143 ccacaagagagggagacaccatatctccacccaaaaccttaatgtattaggtatacgggtcacctc 208  Q
    |||||||||| |||||||||| |||||||||||||| ||||  |  ||||||||| ||||||||||    
54328774 ccacaagagacggagacaccacatctccacccaaaatcttatggcgttaggtatatgggtcacctc 54328839  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 40196155 - 40196217
Alignment:
156 agacaccatatctccacccaaaaccttaatgtattaggtatacgggtcacctctcttatatat 218  Q
    |||| |||||||||||||||||||||||| |  | ||||||| ||||| ||||||||| ||||    
40196155 agactccatatctccacccaaaaccttaaggcgtcaggtatatgggtcccctctcttacatat 40196217  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 43481702 - 43481640
Alignment:
156 agacaccatatctccacccaaaaccttaatgtattaggtatacgggtcacctctcttatatat 218  Q
    |||| ||| ||||||||| |||| ||||||| || ||||||| ||||| ||||||||||||||    
43481702 agacgccacatctccacctaaaatcttaatgcatcaggtatatgggtcccctctcttatatat 43481640  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 43978628 - 43978681
Alignment:
165 atctccacccaaaaccttaatgtattaggtatacgggtcacctctcttatatat 218  Q
    |||||||||||||||||||| | | |||||||| | ||| ||||||||||||||    
43978628 atctccacccaaaaccttaaggcaataggtatatgagtctcctctcttatatat 43978681  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 23162016 - 23161956
Alignment:
158 acaccatatctccacccaaaaccttaatgtattaggtatacgggtcacctctcttatatat 218  Q
    |||||| |||||||||||||| ||||| | ||  |||||| | ||||||||||||||||||    
23162016 acaccacatctccacccaaaatcttaaggcatcgggtatatgagtcacctctcttatatat 23161956  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 206
Target Start/End: Complemental strand, 42115258 - 42115199
Alignment:
147 aagagagggagacaccatatctccacccaaaaccttaatgtattaggtatacgggtcacc 206  Q
    ||||||||||||||||| |||||||||||||||||||||| |||| ||||| || |||||    
42115258 aagagagggagacaccacatctccacccaaaaccttaatgcattatgtatatggttcacc 42115199  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 125 - 230
Target Start/End: Complemental strand, 5073127 - 5073024
Alignment:
125 gggcaaaatgttccaaggccacaagagagggagacaccatatctccacccaaaaccttaatgtattaggtatacgggtcacctctcttatatatatccaa 224  Q
    |||| ||||| |||| | |||||||||||||||||  || |||||||||||||||||||| | |||| ||||| | | | ||||||||||  ||||||||    
5073127 gggctaaatgctccaggaccacaagagagggagacgacacatctccacccaaaaccttaaggcattacgtatatgagacgcctctcttat--atatccaa 5073030  T
225 catttt 230  Q
    ||||||    
5073029 catttt 5073024  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 11806794 - 11806729
Alignment:
166 tctccacccaaaaccttaatgtattaggtatacgggtcacctctcttatatatatccaacatttta 231  Q
    ||||||||||||||||||| | |  ||||||| |||||||||||||||||||||  ||||||||||    
11806794 tctccacccaaaaccttaaggcacaaggtatatgggtcacctctcttatatatacacaacatttta 11806729  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 237
Target Start/End: Original strand, 5981486 - 5981565
Alignment:
156 agacaccatatctccacccaaaaccttaatgtattaggtatacgggtcacctctcttatatatatccaacattttatccatt 237  Q
    |||||||| || ||||||||||||||||| | || ||||| | ||||| |||||||||||  |||||||| |||| ||||||    
5981486 agacaccacatttccacccaaaaccttaaggcatcaggtacatgggtcccctctcttata--tatccaacgttttctccatt 5981565  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 12156439 - 12156399
Alignment:
157 gacaccatatctccacccaaaaccttaatgtattaggtata 197  Q
    ||||||| |||||||||| ||||||||| ||||||||||||    
12156439 gacaccacatctccaccctaaaccttaacgtattaggtata 12156399  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 11776400 - 11776453
Alignment:
165 atctccacccaaaaccttaatgtattaggtatacgggtcacctctcttatatat 218  Q
    |||||||||||||||||||| |||||| ||||| ||||| ||||||||||||||    
11776400 atctccacccaaaaccttaaggtattatgtatatgggtcccctctcttatatat 11776453  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 218
Target Start/End: Original strand, 33730086 - 33730158
Alignment:
146 caagagagggagacaccatatctccacccaaaaccttaatgtattaggtatacgggtcacctctcttatatat 218  Q
    ||||||| |||| ||||| ||||||| |||||||||||||| ||||| | || |||||||||||||| |||||    
33730086 caagagatggaggcaccacatctccatccaaaaccttaatgcattagctctatgggtcacctctcttttatat 33730158  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 178
Target Start/End: Original strand, 33730413 - 33730456
Alignment:
135 ttccaaggccacaagagagggagacaccatatctccacccaaaa 178  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||||    
33730413 ttccaagaccacaagagagggagacgccacatctccacccaaaa 33730456  T

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Target: scaffold0039 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 230
Target Start/End: Complemental strand, 29137 - 29063
Alignment:
156 agacaccatatctccacccaaaaccttaatgtattaggtatacgggtcacctctcttatatatatccaacatttt 230  Q
    |||||||| |||||||||||||| |||||   || || |||| | ||| ||||||||||||||||||||||||||    
29137 agacaccacatctccacccaaaatcttaagacatcagatatatgagtcccctctcttatatatatccaacatttt 29063  T

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