View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4354-Insertion-9 (Length: 439)
Name: NF4354-Insertion-9
Description: NF4354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4354-Insertion-9 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 8 - 274
Target Start/End: Original strand, 51863231 - 51863497
Alignment:
| Q |
8 |
tctcttctaacaccatatgtgcaacagctcggaatcccacacgcgtgggccagcattatatggttatgtgggcctctttctgggcttcttgttcaaccct |
107 |
Q |
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| T |
51863231 |
tctcttctaacaccatatgtgcaacagctcggaatcccacacgcgtgggccagcattatatggttatgtgggcctctttctgggcttcttgttcaaccct |
51863330 |
T |
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| Q |
108 |
tggttgggcatttgagtgatcggtgtacgagtcgatttgggagaagaagaccgtttatactcggaggagctgtttcgattgtgatttctgttcttattat |
207 |
Q |
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| T |
51863331 |
tggttgggcatttgagtgatcggtgtacgagtcgatttgggagaagaagaccgtttatactcggaggagctgtttcgattgtgatttctgttcttattat |
51863430 |
T |
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| Q |
208 |
tggtcatgctgcggatttgggatggaaatttggtgataccaagaatcatcgccattctgctgtcgcg |
274 |
Q |
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| T |
51863431 |
tggtcatgctgcggatttgggatggaaatttggtgataccaagaatcatcgccattctgctgtcgcg |
51863497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 301 - 439
Target Start/End: Original strand, 51863524 - 51863662
Alignment:
| Q |
301 |
ggatgttgctaataatgttactcaaggtccttgtagagcgttgcttggtgatctcactggtaaatttttctcctccacacgaatattatgatctgaaata |
400 |
Q |
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| T |
51863524 |
ggatgttgctaataatgttactcaaggtccttgtagagcattgcttggtgatctcactggtaaatttttctcctccttatgaatattatgatctgaaata |
51863623 |
T |
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| Q |
401 |
atttgcaattgtttcggtgtctagttgagtaaacttgag |
439 |
Q |
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| T |
51863624 |
atttgcaattgtttcggtgtctagttgagtaaacttgag |
51863662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 28520418 - 28520381
Alignment:
| Q |
302 |
gatgttgctaataatgttactcaaggtccttgtagagc |
339 |
Q |
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| T |
28520418 |
gatgttgctaataatgttactcaaggtccttgtagagc |
28520381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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