View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4355-Insertion-1 (Length: 965)
Name: NF4355-Insertion-1
Description: NF4355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4355-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 8 - 401
Target Start/End: Complemental strand, 11399431 - 11399038
Alignment:
| Q |
8 |
agtctgtttggagttgaagccaaatgggtgagttcgtatataattgtcattgtatgttcccaaatcgctgctgttctgttttgtagaggatggtcgtgga |
107 |
Q |
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| T |
11399431 |
agtctgtttggagttgaagccaaatgggtgagttcgtatataattgtcattgtatgttcccaaatcgctgctgttctgttttgtagaggatggtcgtgga |
11399332 |
T |
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| Q |
108 |
tttgaagttgggtgtttttgttagcacagcaattacttgttactcaagaaatgaatgatttatagagaaattgagagagaaaagagatagatacaaatga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11399331 |
tttgaagttgggtgtttttgttagcacagcaattacttgttactcaagaaatgaatgatttatagagaaattgagagagaaaagagatagatacaaatga |
11399232 |
T |
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| Q |
208 |
ttgtaattctatattctcagtagtgaatgaaaagtgaacattacaataatttatactaagcatatgtaactaacttgtaaaacaagcaactactcttcta |
307 |
Q |
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| T |
11399231 |
ttgtaattctatattctcagtagtgaatgaaaagtgaacattacaataatttatactaagcatatgtaactaacttgtaaaacaagcaactactcttcta |
11399132 |
T |
|
| Q |
308 |
accaacttccaaaacagttgctaacaaatctaactgttttaactaacttgaattaaaatacaacagtttttgatggtgagaagcgttgcatcca |
401 |
Q |
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| T |
11399131 |
accaacttccaaaacagttgctaacaaatctaactgttttaactaacttgaattaaaatacaacagttttttatcgtgagaagctttgcatcca |
11399038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 235 - 372
Target Start/End: Complemental strand, 36612830 - 36612695
Alignment:
| Q |
235 |
tgaaaagtgaacattacaataatttatactaagcatatgtaactaacttgtaaaacaagcaactactcttctaaccaacttccaaaacagttgctaacaa |
334 |
Q |
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| T |
36612830 |
tgaaaagtgaacactataatcatttataccaagcatgtgtaactaact-gtaaagcaagcaaccgctct-ctaaccaacttctaaaacagttgacaacaa |
36612733 |
T |
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| Q |
335 |
atctaactgttttaactaacttgaattaaaatacaaca |
372 |
Q |
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| T |
36612732 |
acctaactgttttaactaacttaaattaaaatacaaca |
36612695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 36614047 - 36614006
Alignment:
| Q |
181 |
agagagaaaagagatagatacaaatgattgtaattctatatt |
222 |
Q |
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| T |
36614047 |
agagagaaaagagatagatgcaatggattgtaattctatatt |
36614006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 30915356 - 30915288
Alignment:
| Q |
171 |
agagaaattgagagagaaaagagatagatacaaatgattgtaattctatattctcagtagtgaatgaaa |
239 |
Q |
| |
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| T |
30915356 |
agagaaattgagagagataagagatatatgcaatagattgtaattctatattctcattagtgaatgaaa |
30915288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 30904543 - 30904475
Alignment:
| Q |
171 |
agagaaattgagagagaaaagagatagatacaaatgattgtaattctatattctcagtagtgaatgaaa |
239 |
Q |
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| T |
30904543 |
agagaaattgagagagagaagagatatatgcaatagattgtaattctatattctcattaatgaatgaaa |
30904475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 239
Target Start/End: Complemental strand, 8156319 - 8156201
Alignment:
| Q |
120 |
tgtttttgttagcacagcaatta-cttgttactcaagaaatgaatgatttatagagaaattgagagagaaaagagatagatacaaatgattgtaattcta |
218 |
Q |
| |
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||||| |||||||||| ||||| |||||||||| || || ||||||||| |||||||||||||| |||||| ||||| || ||||||||||||| |
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| T |
8156319 |
tgtttgtgttagcacaacaattttcttgttactctagcaacaaatgatttagggagaaattgagaga--aaagagttagattgaatggattgtaattcta |
8156222 |
T |
|
| Q |
219 |
tattctcagtagtgaatgaaa |
239 |
Q |
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|||||||| |||||||||||| |
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| T |
8156221 |
tattctcattagtgaatgaaa |
8156201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 330 - 372
Target Start/End: Original strand, 43695224 - 43695266
Alignment:
| Q |
330 |
aacaaatctaactgttttaactaacttgaattaaaatacaaca |
372 |
Q |
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| T |
43695224 |
aacaaacctaactgttttaactaacttgaattaaaatacaaca |
43695266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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