View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4355-Insertion-15 (Length: 539)

Name: NF4355-Insertion-15
Description: NF4355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4355-Insertion-15
NF4355-Insertion-15
[»] chr6 (2 HSPs)
chr6 (8-539)||(14973694-14974225)
chr6 (40-158)||(14946364-14946482)


Alignment Details
Target: chr6 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 8 - 539
Target Start/End: Complemental strand, 14974225 - 14973694
Alignment:
Q  8 cctttaagaaaaccaatgaaacaatcaaaacatttgcagaacaaaactttgatgtcacagatgttgttgccttatcaggtgcacacacatttggtcgtgc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14974225 cctttaagaaaaccaatgaaacaatcaaaacatttgcagaacaaaactttgatgtcacagatgttgttgccttatcaggtgcacacacatttggtcgtgc 14974126  T
Q  108 acactgtagcgcattctccaataggctctctacaaaggaccctacaatggaaaaatccttagccaaaagcctcaaaactacatgtccaaatgcaagatca 207  Q
    |||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  14974125 acactgtagcacattctccaagaggctctcttcaaaggaccctacaatggaaaaatccttagccaaaagcctcaaaactagatgtccaaatgcaagctca 14974026  T
Q  208 aaaaatacagcaaacttggatttgagaacaccaacattgtttgataacaaatactaccttgaattaatgaatagtcgtggtttgttcacttctgaccaag 307  Q
     | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14974025 gacaatacagcaaacttggatttgagaacaccaacattttttgataacaaatactaccttgaattaatgaatagtcgtggtttgttcacttctgaccaag 14973926  T
Q  308 acttgttcaatgataagagaacaaagggattagtcacttcatttgccaataatcagaagctgttttttgagaagttttccgttgctattactaagatgag 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14973925 acttgttcaatgataagagaacaaagggattagtcacttcatttgccaataatcagaagctgttttttgagaagttttccgttgctattactaagatgag 14973826  T
Q  408 tcaattgagtgtgttgacgggtaatcaaggtgaaattcgtgctaagtgcaatgtttcaaacacgaagtaagccatctagataaagcttatttgtgtaccg 507  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||| ||||||||||||| ||||||||||||||||||||||    
T  14973825 tcaattgagtgtgttgacgggtaatcaaggtgaaattcgcgctaagtgcaatgttgtaaacacaaagtaagccatcttgataaagcttatttgtgtaccg 14973726  T
Q  508 tcaataagagctagttcaattttcgatgttga 539  Q
    |||||||||||||| |||||||||||||||||    
T  14973725 tcaataagagctagctcaattttcgatgttga 14973694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 14946482 - 14946364
Alignment:
Q  40 tttgcagaacaaaactttgatgtcacagatgttgttgccttatcaggtgcacacacatttggtcgtgcacactgtagcgcattctccaataggctctcta 139  Q
    |||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |  |||||| |||||| ||||||     
T  14946482 tttgcagcccaaaactttgatgtcacagatgttgttgcattatcaggtgcacacacatttggtcgtgcacattgtggaacattcttcaatagactctctc 14946383  T
Q  140 caaaggaccctacaatgga 158  Q
    ||  |||||||||| ||||    
T  14946382 cagcggaccctacattgga 14946364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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