View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4355-Insertion-2 (Length: 690)

Name: NF4355-Insertion-2
Description: NF4355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4355-Insertion-2
NF4355-Insertion-2
[»] chr2 (11 HSPs)
chr2 (8-689)||(17455872-17456554)
chr2 (75-208)||(17434228-17434361)
chr2 (510-644)||(17805267-17805401)
chr2 (75-197)||(17463630-17463749)
chr2 (417-475)||(2307359-2307417)
chr2 (366-420)||(2859363-2859417)
chr2 (366-420)||(45690503-45690557)
chr2 (363-392)||(8362402-8362431)
chr2 (431-475)||(7069460-7069504)
chr2 (431-475)||(8504124-8504168)
chr2 (431-475)||(43359369-43359413)
[»] chr1 (11 HSPs)
chr1 (535-644)||(775370-775479)
chr1 (366-420)||(49982460-49982514)
chr1 (431-475)||(49982553-49982597)
chr1 (366-420)||(36735516-36735571)
chr1 (366-412)||(23539946-23539992)
chr1 (355-412)||(40054944-40055001)
chr1 (431-475)||(17203014-17203058)
chr1 (363-407)||(26423842-26423886)
chr1 (431-475)||(34411046-34411090)
chr1 (431-475)||(39084806-39084850)
chr1 (431-475)||(46283039-46283083)
[»] chr4 (11 HSPs)
chr4 (510-641)||(52142584-52142715)
chr4 (366-407)||(4491217-4491258)
chr4 (366-407)||(4695669-4695710)
chr4 (363-392)||(9579665-9579694)
chr4 (363-392)||(9585360-9585389)
chr4 (363-392)||(18051775-18051804)
chr4 (416-457)||(19627871-19627912)
chr4 (431-475)||(17281870-17281914)
chr4 (431-475)||(17370372-17370416)
chr4 (431-475)||(48207344-48207388)
chr4 (431-475)||(54178686-54178730)
[»] scaffold0009 (1 HSPs)
scaffold0009 (366-412)||(214496-214542)
[»] chr8 (6 HSPs)
chr8 (367-420)||(12801454-12801507)
chr8 (366-420)||(30777276-30777330)
chr8 (431-476)||(37218866-37218911)
chr8 (431-475)||(11360265-11360309)
chr8 (431-475)||(36569757-36569801)
chr8 (431-475)||(44637017-44637061)
[»] chr7 (11 HSPs)
chr7 (367-420)||(27800033-27800086)
chr7 (431-475)||(2932672-2932716)
chr7 (366-420)||(2089211-2089265)
chr7 (366-412)||(29688928-29688974)
chr7 (363-407)||(1343382-1343426)
chr7 (366-406)||(8159642-8159682)
chr7 (431-475)||(11640560-11640604)
chr7 (356-412)||(21919682-21919738)
chr7 (431-475)||(22639462-22639506)
chr7 (431-475)||(42584027-42584071)
chr7 (366-410)||(43542138-43542182)
[»] chr3 (6 HSPs)
chr3 (363-407)||(11510718-11510762)
chr3 (363-392)||(4393523-4393552)
chr3 (363-392)||(24105151-24105180)
chr3 (431-476)||(29815393-29815438)
chr3 (366-407)||(52776453-52776494)
chr3 (431-475)||(4521365-4521409)
[»] chr6 (9 HSPs)
chr6 (366-412)||(1705962-1706008)
chr6 (366-412)||(14507977-14508023)
chr6 (366-412)||(19474028-19474074)
chr6 (366-407)||(10887813-10887854)
chr6 (431-475)||(926809-926853)
chr6 (431-475)||(6295645-6295689)
chr6 (431-475)||(6302455-6302499)
chr6 (363-407)||(7344322-7344366)
chr6 (431-475)||(14501291-14501335)
[»] chr5 (3 HSPs)
chr5 (363-392)||(19189484-19189513)
chr5 (431-475)||(2011151-2011195)
chr5 (431-475)||(29665916-29665960)


Alignment Details
Target: chr2 (Bit Score: 623; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 8 - 689
Target Start/End: Complemental strand, 17456554 - 17455872
Alignment:
Q  8 aggtttggtgtcctcttctcctaaataaattctgttttgttgaaaaaagttagttannnnnnnn-atctagggtttgatcaattaaaaaatggcggtatg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||    
T  17456554 aggtttggtgtcctcttctcctaaataaattctgttttgttgaaaaaagttagttatttttttttatctagggtttgatcaattaaaaaatggcggtatg 17456455  T
Q  107 gagcttagatggtcctgaaggagcttttgaacaaaatgtatctgttggtgaagacatttgggaaagaagccttgaggttgatctgatcaagatgaaaaat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17456454 gagcttagatggtcctgaaggagcttttgaacaaaatgtatctgttggtgaagacatttgggaaagaagccttgaggttgatctgatcaagatgaaaaat 17456355  T
Q  207 cacctgaagaaacgagaagctgaactttggttgttgcaattgcattccacgttgttgatcagtctacttgtgttgtttttctttgcactgttattgtggg 306  Q
    || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17456354 catcttaagaaacgagaagctgaactttggttgttgcaattgcattccacgttgttgatcagtctacttgtgttgtttttctttgcactgttattatggg 17456255  T
Q  307 caataagtgggtggttcgaccattaatatatgcacattcacataacaaaaatatatgggacttctacggtacacctcataaattgaactgcaccggtact 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17456254 caataagtgggtggttcgaccattaatatatgcacattcacataacaaaaatatatgggacttctacggtacacctcataaattgaactgcaccggtact 17456155  T
Q  407 cttgctatataaataattagttgcttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaacgttgcaagagtacccttataaacaactctt 506  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17456154 cttgctatataaatagttagttgtttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaacgttgcaagagtacccttataaacaactctt 17456055  T
Q  507 agcagataaatcctatatttggacatggatgtttctggtacccttagcagcttacattctgtggcagcttctatacctcctcattgttaatgttttgtgc 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17456054 agcagataaatcctatatttggacatggatgtttctggtacccttagcagcttacattctgtggcagcttctatacctcctcattgttaatgttttgtgc 17455955  T
Q  607 cgacaacggcttttaagagatcctgaaatcatgacttctacagggaatcgatgaccacgcgcatacttcattccctttttcag 689  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  17455954 cgacaacggcttttaagagatcctgaaatcatgacttctacaggtaatcaatgaccacgcgcatacttcattccctttttcag 17455872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 17434361 - 17434228
Alignment:
Q  75 tagggtttgatcaattaaaaaatggcggtatggagcttagatggtcctgaaggagcttttgaacaaaatgtatctgttggtgaagacatttgggaaagaa 174  Q
    ||||||||||||||| || ||||||| | |||||| | |||||||||||||||| ||||||  ||||||||||| ||||||  |||||||||   |||||    
T  17434361 tagggtttgatcaatcaagaaatggcagcatggagttcagatggtcctgaaggaccttttgtgcaaaatgtatcagttggtacagacatttgtcgaagaa 17434262  T
Q  175 gccttgaggttgatctgatcaagatgaaaaatca 208  Q
    ||||||| |||||| | ||||||||||| |||||    
T  17434261 gccttgaagttgatttcatcaagatgaataatca 17434228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 510 - 644
Target Start/End: Complemental strand, 17805401 - 17805267
Alignment:
Q  510 agataaatcctatatttggacatggatgtttctggtacccttagcagcttacattctgtggcagcttctatacctcctcattgttaatgttttgtgccga 609  Q
    ||||||||||||| | || |||||| |||||||||| ||||||| || |||||   |||||||| ||||||||  ||||||||| ||||| ||  |||||    
T  17805401 agataaatcctatctatgtacatggctgtttctggttcccttagtagtttacaccttgtggcaggttctatactacctcattgtcaatgtcttacgccga 17805302  T
Q  610 caacggcttttaagagatcctgaaatcatgacttc 644  Q
    |||||| ||||||||||||| ||| ||||||||||    
T  17805301 caacggtttttaagagatcccgaagtcatgacttc 17805267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 197
Target Start/End: Complemental strand, 17463749 - 17463630
Alignment:
Q  75 tagggtttgatcaattaaaaaatggcggtatggagcttagatggtcctgaaggagcttttgaacaaaatgtatctgttggtgaagacatttgggaaagaa 174  Q
    ||||||||| | |||  ||||||||| | |||||||| ||||||||||||||||    ||  |||||| ||||||||||||||| |||| ||  |||||     
T  17463749 tagggtttggtaaatagaaaaatggcagcatggagctcagatggtcctgaaggac---ttccacaaaaagtatctgttggtgaaaacatatgtcaaagac 17463653  T
Q  175 gccttgaggttgatctgatcaag 197  Q
    || ||||||||||| ||||||||    
T  17463652 gcattgaggttgatatgatcaag 17463630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 417 - 475
Target Start/End: Original strand, 2307359 - 2307417
Alignment:
Q  417 aaataattagttgcttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaa 475  Q
    |||||| |||||| ||||||||| ||||||||||||||||| |||  ||| ||||||||    
T  2307359 aaataaatagttgtttgtcaatatttatattttagaaaacatcatttcacaagaaaaaa 2307417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 366 - 420
Target Start/End: Original strand, 2859363 - 2859417
Alignment:
Q  366 acttctacggtacacctcataaattgaactgcaccggtactcttgctatataaat 420  Q
    |||||||||||||| ||||||||||||  || ||||||||||||| | |||||||    
T  2859363 acttctacggtacatctcataaattgaggtgtaccggtactcttgttctataaat 2859417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 366 - 420
Target Start/End: Original strand, 45690503 - 45690557
Alignment:
Q  366 acttctacggtacacctcataaattgaactgcaccggtactcttgctatataaat 420  Q
    ||||||||||||||||||| |||||||  || ||||||||||| ||| |||||||    
T  45690503 acttctacggtacacctcacaaattgaggtgtaccggtactctcgctctataaat 45690557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 392
Target Start/End: Original strand, 8362402 - 8362431
Alignment:
Q  363 gggacttctacggtacacctcataaattga 392  Q
    ||||||||||||||||||||||||||||||    
T  8362402 gggacttctacggtacacctcataaattga 8362431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 475
Target Start/End: Complemental strand, 7069504 - 7069460
Alignment:
Q  431 ttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaa 475  Q
    |||||| || |||||||||||||||||||||| || |||||||||    
T  7069504 ttgtcattatttatattttagaaaacaccatctcatgagaaaaaa 7069460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 8504124 - 8504168
Alignment:
Q  431 ttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaa 475  Q
    |||||| || |||||||||||||||||||||| || |||||||||    
T  8504124 ttgtcattatttatattttagaaaacaccatctcatgagaaaaaa 8504168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 475
Target Start/End: Complemental strand, 43359413 - 43359369
Alignment:
Q  431 ttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaa 475  Q
    |||||| || |||||||||||||||||||||| || |||||||||    
T  43359413 ttgtcattatttatattttagaaaacaccatctcatgagaaaaaa 43359369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 2e-45; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 535 - 644
Target Start/End: Complemental strand, 775479 - 775370
Alignment:
Q  535 atgtttctggtacccttagcagcttacattctgtggcagcttctatacctcctcattgttaatgttttgtgccgacaacggcttttaagagatcctgaaa 634  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||     
T  775479 atgtttctggtacccttagcagcttacattatgtggcagcttctatacctcctcattgttaatgtcttgtgccgaaaacggcttttaagagatcctgaag 775380  T
Q  635 tcatgacttc 644  Q
    ||||||||||    
T  775379 tcatgacttc 775370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 366 - 420
Target Start/End: Original strand, 49982460 - 49982514
Alignment:
Q  366 acttctacggtacacctcataaattgaactgcaccggtactcttgctatataaat 420  Q
    |||||||||||||||||||||||||||  || |||| ||||| ||||||||||||    
T  49982460 acttctacggtacacctcataaattgaggtgtaccgatactcctgctatataaat 49982514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 49982553 - 49982597
Alignment:
Q  431 ttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaa 475  Q
    ||||||||| |||||||||||||||||||||| || |||||||||    
T  49982553 ttgtcaatatttatattttagaaaacaccatctcatgagaaaaaa 49982597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 366 - 420
Target Start/End: Original strand, 36735516 - 36735571
Alignment:
Q  366 acttctacggtacacctcataaattgaactgcaccggtact-cttgctatataaat 420  Q
    |||||||||||||||||||||||||| | || ||||||||| |||||| |||||||    
T  36735516 acttctacggtacacctcataaattggagtgtaccggtactccttgctttataaat 36735571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 366 - 412
Target Start/End: Original strand, 23539946 - 23539992
Alignment:
Q  366 acttctacggtacacctcataaattgaactgcaccggtactcttgct 412  Q
    ||||||||||||||||||| |||||||  || |||||||||||||||    
T  23539946 acttctacggtacacctcagaaattgaggtgtaccggtactcttgct 23539992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 412
Target Start/End: Complemental strand, 40055001 - 40054944
Alignment:
Q  355 aaatatatgggacttctacggtacacctcataaattgaactgcaccggtactcttgct 412  Q
    ||||||| || ||||||||||||||||||| |||||||  || |||||||||| ||||    
T  40055001 aaatatagggaacttctacggtacacctcacaaattgaggtgtaccggtactcctgct 40054944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 475
Target Start/End: Complemental strand, 17203058 - 17203014
Alignment:
Q  431 ttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaa 475  Q
    |||||| || |||||||||||||||||||||| || |||||||||    
T  17203058 ttgtcattatttatattttagaaaacaccatctcatgagaaaaaa 17203014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 363 - 407
Target Start/End: Original strand, 26423842 - 26423886
Alignment:
Q  363 gggacttctacggtacacctcataaattgaactgcaccggtactc 407  Q
    |||||||||||||||||||||||||||| |  || ||||||||||    
T  26423842 gggacttctacggtacacctcataaattaaggtgtaccggtactc 26423886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 34411046 - 34411090
Alignment:
Q  431 ttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaa 475  Q
    |||||| || |||||||||||||||||||||| || |||||||||    
T  34411046 ttgtcattatttatattttagaaaacaccatctcatgagaaaaaa 34411090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 39084806 - 39084850
Alignment:
Q  431 ttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaa 475  Q
    |||||| || |||||||||||||||||||||| || |||||||||    
T  39084806 ttgtcattatttatattttagaaaacaccatctcatgagaaaaaa 39084850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 475
Target Start/End: Complemental strand, 46283083 - 46283039
Alignment:
Q  431 ttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaa 475  Q
    |||||| || |||||||||||||||||||||| || |||||||||    
T  46283083 ttgtcattatttatattttagaaaacaccatctcatgagaaaaaa 46283039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 510 - 641
Target Start/End: Original strand, 52142584 - 52142715
Alignment:
Q  510 agataaatcctatatttggacatggatgtttctggtacccttagcagcttacattctgtggcagcttctatacctcctcattgttaatgttttgtgccga 609  Q
    ||||||||||||| ||||||||||| |||||||||| ||||||| ||||||||||||||||||| |||||||| |||||||||| ||||| ||  |||||    
T  52142584 agataaatcctatctttggacatggctgtttctggttcccttagtagcttacattctgtggcaggttctatacttcctcattgtcaatgtcttacgccga 52142683  T
Q  610 caacggcttttaagagatcctgaaatcatgac 641  Q
    ||| |||||||||||||||||||| |||||||    
T  52142684 caaaggcttttaagagatcctgaagtcatgac 52142715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 407
Target Start/End: Complemental strand, 4491258 - 4491217
Alignment:
Q  366 acttctacggtacacctcataaattgaactgcaccggtactc 407  Q
    |||||||||||||||||||||||||||  || ||||||||||    
T  4491258 acttctacggtacacctcataaattgaggtgtaccggtactc 4491217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 407
Target Start/End: Complemental strand, 4695710 - 4695669
Alignment:
Q  366 acttctacggtacacctcataaattgaactgcaccggtactc 407  Q
    ||||||| |||||||||||||||||||  |||||||||||||    
T  4695710 acttctagggtacacctcataaattgaggtgcaccggtactc 4695669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 392
Target Start/End: Original strand, 9579665 - 9579694
Alignment:
Q  363 gggacttctacggtacacctcataaattga 392  Q
    ||||||||||||||||||||||||||||||    
T  9579665 gggacttctacggtacacctcataaattga 9579694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 392
Target Start/End: Original strand, 9585360 - 9585389
Alignment:
Q  363 gggacttctacggtacacctcataaattga 392  Q
    ||||||||||||||||||||||||||||||    
T  9585360 gggacttctacggtacacctcataaattga 9585389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 392
Target Start/End: Original strand, 18051775 - 18051804
Alignment:
Q  363 gggacttctacggtacacctcataaattga 392  Q
    ||||||||||||||||||||||||||||||    
T  18051775 gggacttctacggtacacctcataaattga 18051804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 457
Target Start/End: Complemental strand, 19627912 - 19627871
Alignment:
Q  416 taaataattagttgcttgtcaatacttatattttagaaaaca 457  Q
    |||||||||||||  ||||||||| |||||||||||||||||    
T  19627912 taaataattagttatttgtcaatatttatattttagaaaaca 19627871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 17281870 - 17281914
Alignment:
Q  431 ttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaa 475  Q
    |||||| || |||||||||||||||||||||| || |||||||||    
T  17281870 ttgtcattatttatattttagaaaacaccatctcaggagaaaaaa 17281914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 17370372 - 17370416
Alignment:
Q  431 ttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaa 475  Q
    |||||| || |||||||||||||||||||||| || |||||||||    
T  17370372 ttgtcattatttatattttagaaaacaccatctcaggagaaaaaa 17370416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 475
Target Start/End: Complemental strand, 48207388 - 48207344
Alignment:
Q  431 ttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaa 475  Q
    |||||| || |||||||||||||||||||||| || |||||||||    
T  48207388 ttgtcattatttatattttagaaaacaccatctcaggagaaaaaa 48207344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 475
Target Start/End: Complemental strand, 54178730 - 54178686
Alignment:
Q  431 ttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaa 475  Q
    |||||| || |||||||||||||||||||||| || |||||||||    
T  54178730 ttgtcattatttatattttagaaaacaccatctcatgagaaaaaa 54178686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 366 - 412
Target Start/End: Complemental strand, 214542 - 214496
Alignment:
Q  366 acttctacggtacacctcataaattgaactgcaccggtactcttgct 412  Q
    |||||||||||||||||||||||||||| || |||||||||| ||||    
T  214542 acttctacggtacacctcataaattgaattgtaccggtactcctgct 214496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 367 - 420
Target Start/End: Complemental strand, 12801507 - 12801454
Alignment:
Q  367 cttctacggtacacctcataaattgaactgcaccggtactcttgctatataaat 420  Q
    ||||||||||||||||||||||||||  || ||||||||||| ||| |||||||    
T  12801507 cttctacggtacacctcataaattgaggtgtaccggtactctcgctctataaat 12801454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 366 - 420
Target Start/End: Original strand, 30777276 - 30777330
Alignment:
Q  366 acttctacggtacacctcataaattgaactgcaccggtactcttgctatataaat 420  Q
    |||||||||||||||||||||||||||  || |||| ||||| |||| |||||||    
T  30777276 acttctacggtacacctcataaattgaggtgtaccgatactcctgctttataaat 30777330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 476
Target Start/End: Complemental strand, 37218911 - 37218866
Alignment:
Q  431 ttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaac 476  Q
    ||||||||| ||||||||||||||||| |||| || ||||||||||    
T  37218911 ttgtcaatatttatattttagaaaacatcatctcatgagaaaaaac 37218866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 11360265 - 11360309
Alignment:
Q  431 ttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaa 475  Q
    |||||| || |||||||||||||||||||||| || |||||||||    
T  11360265 ttgtcattatttatattttagaaaacaccatctcatgagaaaaaa 11360309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 36569757 - 36569801
Alignment:
Q  431 ttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaa 475  Q
    |||||| || |||||||||||||||||||||| || |||||||||    
T  36569757 ttgtcattatttatattttagaaaacaccatctcatgagaaaaaa 36569801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 44637017 - 44637061
Alignment:
Q  431 ttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaa 475  Q
    |||||| || |||||||||||||||||||||| || |||||||||    
T  44637017 ttgtcattatttatattttagaaaacaccatctcatgagaaaaaa 44637061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 367 - 420
Target Start/End: Original strand, 27800033 - 27800086
Alignment:
Q  367 cttctacggtacacctcataaattgaactgcaccggtactcttgctatataaat 420  Q
    ||||||||||||||||||||||||||  || ||||||||||| ||| |||||||    
T  27800033 cttctacggtacacctcataaattgaggtgtaccggtactctcgctctataaat 27800086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 2932672 - 2932716
Alignment:
Q  431 ttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaa 475  Q
    |||||| || |||||||||||||||||||||| ||||||||||||    
T  2932672 ttgtcattatttatattttagaaaacaccatctcacgagaaaaaa 2932716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 366 - 420
Target Start/End: Complemental strand, 2089265 - 2089211
Alignment:
Q  366 acttctacggtacacctcataaattgaactgcaccggtactcttgctatataaat 420  Q
    ||||||||||||||||| ||||| |||  || ||||||||||||||| |||||||    
T  2089265 acttctacggtacacctaataaaatgaggtgtaccggtactcttgctttataaat 2089211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 366 - 412
Target Start/End: Original strand, 29688928 - 29688974
Alignment:
Q  366 acttctacggtacacctcataaattgaactgcaccggtactcttgct 412  Q
    |||||||||||||||||||||||||||  || |||||||||| ||||    
T  29688928 acttctacggtacacctcataaattgaggtgtaccggtactcctgct 29688974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 363 - 407
Target Start/End: Complemental strand, 1343426 - 1343382
Alignment:
Q  363 gggacttctacggtacacctcataaattgaactgcaccggtactc 407  Q
    ||||||||||||||||||| ||||||||||  || ||||||||||    
T  1343426 gggacttctacggtacaccacataaattgagatgtaccggtactc 1343382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 366 - 406
Target Start/End: Original strand, 8159642 - 8159682
Alignment:
Q  366 acttctacggtacacctcataaattgaactgcaccggtact 406  Q
    |||||||||||||||||||||||||||| ||  ||||||||    
T  8159642 acttctacggtacacctcataaattgaagtgtgccggtact 8159682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 475
Target Start/End: Complemental strand, 11640604 - 11640560
Alignment:
Q  431 ttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaa 475  Q
    |||||| || |||||||||||||||||||||| || |||||||||    
T  11640604 ttgtcattatttatattttagaaaacaccatctcatgagaaaaaa 11640560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 356 - 412
Target Start/End: Original strand, 21919682 - 21919738
Alignment:
Q  356 aatatatgggacttctacggtacacctcataaattgaactgcaccggtactcttgct 412  Q
    |||||| || ||||||||||||||||||| |||||||  || |||||||||| ||||    
T  21919682 aatatagggaacttctacggtacacctcacaaattgaggtgtaccggtactcctgct 21919738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 22639462 - 22639506
Alignment:
Q  431 ttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaa 475  Q
    |||||| || |||||||||||||||||||||| || |||||||||    
T  22639462 ttgtcattatttatattttagaaaacaccatctcatgagaaaaaa 22639506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 475
Target Start/End: Complemental strand, 42584071 - 42584027
Alignment:
Q  431 ttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaa 475  Q
    ||||||||| ||||||||||||||||| |||| || |||||||||    
T  42584071 ttgtcaatatttatattttagaaaacatcatctcatgagaaaaaa 42584027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 366 - 410
Target Start/End: Complemental strand, 43542182 - 43542138
Alignment:
Q  366 acttctacggtacacctcataaattgaactgcaccggtactcttg 410  Q
    |||||||||||||||||||||||||||  |||| || ||||||||    
T  43542182 acttctacggtacacctcataaattgaggtgcatcgatactcttg 43542138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 363 - 407
Target Start/End: Original strand, 11510718 - 11510762
Alignment:
Q  363 gggacttctacggtacacctcataaattgaactgcaccggtactc 407  Q
    |||||||||||| |||||||||||||||||  |||||||||||||    
T  11510718 gggacttctacgatacacctcataaattgaggtgcaccggtactc 11510762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 392
Target Start/End: Complemental strand, 4393552 - 4393523
Alignment:
Q  363 gggacttctacggtacacctcataaattga 392  Q
    ||||||||||||||||||||||||||||||    
T  4393552 gggacttctacggtacacctcataaattga 4393523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 392
Target Start/End: Original strand, 24105151 - 24105180
Alignment:
Q  363 gggacttctacggtacacctcataaattga 392  Q
    ||||||||||||||||||||||||||||||    
T  24105151 gggacttctacggtacacctcataaattga 24105180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 476
Target Start/End: Complemental strand, 29815438 - 29815393
Alignment:
Q  431 ttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaac 476  Q
    ||||||||| ||||||||||||||||| |||| || ||||||||||    
T  29815438 ttgtcaatatttatattttagaaaacatcatctcatgagaaaaaac 29815393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 407
Target Start/End: Original strand, 52776453 - 52776494
Alignment:
Q  366 acttctacggtacacctcataaattgaactgcaccggtactc 407  Q
    |||||||||||||||||||||||||||  || ||||||||||    
T  52776453 acttctacggtacacctcataaattgaggtgtaccggtactc 52776494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 4521365 - 4521409
Alignment:
Q  431 ttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaa 475  Q
    |||||| || |||||||||||||||||||||| || |||||||||    
T  4521365 ttgtcattatttatattttagaaaacaccatctcaggagaaaaaa 4521409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 366 - 412
Target Start/End: Complemental strand, 1706008 - 1705962
Alignment:
Q  366 acttctacggtacacctcataaattgaactgcaccggtactcttgct 412  Q
    |||||||||||||||||||||||||||  || |||||||||| ||||    
T  1706008 acttctacggtacacctcataaattgaggtgtaccggtactcctgct 1705962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 366 - 412
Target Start/End: Complemental strand, 14508023 - 14507977
Alignment:
Q  366 acttctacggtacacctcataaattgaactgcaccggtactcttgct 412  Q
    |||||||||||||||||||||||||||  || |||||||||| ||||    
T  14508023 acttctacggtacacctcataaattgaggtgtaccggtactcctgct 14507977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 366 - 412
Target Start/End: Complemental strand, 19474074 - 19474028
Alignment:
Q  366 acttctacggtacacctcataaattgaactgcaccggtactcttgct 412  Q
    ||||||||||||||||||| |||||||  || |||||||||||||||    
T  19474074 acttctacggtacacctcacaaattgaggtgtaccggtactcttgct 19474028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 407
Target Start/End: Original strand, 10887813 - 10887854
Alignment:
Q  366 acttctacggtacacctcataaattgaactgcaccggtactc 407  Q
    |||||||||||||||||||||||||||  || ||||||||||    
T  10887813 acttctacggtacacctcataaattgaggtgtaccggtactc 10887854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 475
Target Start/End: Complemental strand, 926853 - 926809
Alignment:
Q  431 ttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaa 475  Q
    |||||| || |||||||||||||||||||||| || |||||||||    
T  926853 ttgtcattatttatattttagaaaacaccatctcatgagaaaaaa 926809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 475
Target Start/End: Complemental strand, 6295689 - 6295645
Alignment:
Q  431 ttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaa 475  Q
    |||||| || |||||||||||||||||||||| || |||||||||    
T  6295689 ttgtcattatttatattttagaaaacaccatctcatgagaaaaaa 6295645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 475
Target Start/End: Complemental strand, 6302499 - 6302455
Alignment:
Q  431 ttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaa 475  Q
    |||||| || |||||||||||||||||||||| || |||||||||    
T  6302499 ttgtcattatttatattttagaaaacaccatctcatgagaaaaaa 6302455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 363 - 407
Target Start/End: Original strand, 7344322 - 7344366
Alignment:
Q  363 gggacttctacggtacacctcataaattgaactgcaccggtactc 407  Q
    ||||||||||||||||||| ||||||||||  || ||||||||||    
T  7344322 gggacttctacggtacaccacataaattgaggtgtaccggtactc 7344366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 475
Target Start/End: Complemental strand, 14501335 - 14501291
Alignment:
Q  431 ttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaa 475  Q
    |||||| || |||||||||||||||||||||| || |||||||||    
T  14501335 ttgtcattatttatattttagaaaacaccatctcatgagaaaaaa 14501291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 392
Target Start/End: Complemental strand, 19189513 - 19189484
Alignment:
Q  363 gggacttctacggtacacctcataaattga 392  Q
    ||||||||||||||||||||||||||||||    
T  19189513 gggacttctacggtacacctcataaattga 19189484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 2011151 - 2011195
Alignment:
Q  431 ttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaa 475  Q
    |||||| || |||||||||||||||||||||| || |||||||||    
T  2011151 ttgtcattatttatattttagaaaacaccatctcatgagaaaaaa 2011195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 29665916 - 29665960
Alignment:
Q  431 ttgtcaatacttatattttagaaaacaccatcgcacgagaaaaaa 475  Q
    |||||| || |||||||||||||||||||||| || |||||||||    
T  29665916 ttgtcattatttatattttagaaaacaccatctcatgagaaaaaa 29665960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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