View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4355-Insertion-3 (Length: 910)
Name: NF4355-Insertion-3
Description: NF4355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4355-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 712; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 712; E-Value: 0
Query Start/End: Original strand, 19 - 909
Target Start/End: Original strand, 10028846 - 10029740
Alignment:
| Q |
19 |
ccgaaagcctctccgatagtgagaagggtttttaaactttgtagagtttgatgatcgccttttgttaccatcggatcgccattttcttaaagcctcttca |
118 |
Q |
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|||| ||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10028846 |
ccgagagcttcttcgatagtgagaagggtttttaaactttgtagagtatgatgatcgccttttgttaccctcggatcgccattttcttaaagcctcttca |
10028945 |
T |
|
| Q |
119 |
actactaacttccctctattagcagcctctactctttccaaagcttcttcaagagccttttt-cttgttttaacttcgaatgtagcttcttcaacccttt |
217 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||| |
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| T |
10028946 |
actactaatttccctctatttgcagcctctactctttccaaagcttcttcaagagcctgcttgcttgttttaacttcaaatgtagcttcttcaacccttt |
10029045 |
T |
|
| Q |
218 |
ttaaaacatccattttcgatacatttgcttcgtcaacttgaaacatagcatcatgaactctcttcttagattgttcatctacctctctagctttgcatgt |
317 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10029046 |
ttaaaacatccattttcgatacatttgcttcttcaacttgaaacatagcatcatgaactctcttcttagattgttcatctacctctctagctttgcatgt |
10029145 |
T |
|
| Q |
318 |
tagagcattatactcctcaaaggtaagagtaactccatcacacttttgcacacagtgtccgtcataataagataacgcttttatctcagcaagtgcagtt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| | |
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| T |
10029146 |
tagagcattatactcctcaaaggtaagagtaactccatcacacttttgcacacagtttccgtcataataagataacgcttttatctcggcaagtgcagct |
10029245 |
T |
|
| Q |
418 |
gcttcggcagccctagcagcttccttcatttttagagcagcaactaatctaatttcggatgttcttatcatagcttttgtctgttcaatatcagacattg |
517 |
Q |
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|||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10029246 |
gcttcggcggcccgagcagcttccttcatttttcgagcagcaactaatctaatttcggatgttcttatcatagcttttgtctgttcaatctcagacattg |
10029345 |
T |
|
| Q |
518 |
ctctcgtaacttctgatttcgcaacttctcccattttcttgaaatgttctgcctcggaactcaatcgttgaagctctttcgtaatatcggaaggttcatc |
617 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10029346 |
ctctcgtaacttctgatttcgcaacttctcccattttcttgaaatgttctgcctcggaactcaatcgttgaagctctttcgtaatatcggaaggttcatc |
10029445 |
T |
|
| Q |
618 |
tgaaccacattcaatttcagcatctttcaccacctgcagtttaagtcttgtttggtttagctctccctctagtgaagttatttttgaagaattctgagtt |
717 |
Q |
| |
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| T |
10029446 |
tgaaccacattcaatttcagcatctttcaccacctgcagtttaagtcttgtttggtttagctcttcctctagtgaagttatttttgaagaattctgagtt |
10029545 |
T |
|
| Q |
718 |
gaactctctctggttttctcgagtgatatcctttaatttccttctgaagtttctttttgagtgattccac-----ctcgaacatcagcgatattgtttgt |
812 |
Q |
| |
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|||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||| ||||||||||||| |||| || || |
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| T |
10029546 |
aaactctctctggttttctcgagtgatattc-----tttccttctgaagtttcttgttgagtgattccacagaaactcgaacatcagcaatatcattcgt |
10029640 |
T |
|
| Q |
813 |
tgctcggtttagattcaatttcgcttgcttcaattccctt-aaattaagcctggattcgccgaattggaagg-acacgacttccatgg-tttccttttct |
909 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||| |||||| ||||||||||| |
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| T |
10029641 |
tgttcggtttagattcaatttcgcttgcttcaattcccttaaaattaagcctggactcgccgaattggaaggaacacgactcccatggttttccttttct |
10029740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 7e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 74 - 311
Target Start/End: Complemental strand, 26987655 - 26987417
Alignment:
| Q |
74 |
cgccttttgttaccatcggatcgccattttcttaaagcctcttcaactactaacttccctctattagcagcctctactctttccaaagcttcttcaagag |
173 |
Q |
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|||||||| | ||| || ||||||||||| |||||||||||||||||| | ||||||||||||| ||||||||||| |||| | |||||||||||| | |
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| T |
26987655 |
cgccttttttgaccgtcagatcgccatttccttaaagcctcttcaacttccaacttccctctatctgcagcctctaccctttgtagagcttcttcaaggg |
26987556 |
T |
|
| Q |
174 |
cctt-tttcttgttttaacttcgaatgtagcttcttcaaccctttttaaaacatccattttcgatacatttgcttcgtcaacttgaaacatagcatcatg |
272 |
Q |
| |
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|||| || | |||| |||||| ||| ||||| || |||||||| ||||||||||| | ||| ||||||||| ||||||| || ||||||||| |
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| T |
26987555 |
ccttcttgcaagtttgaacttcttctgttgcttcctctacccttttaaaaacatccatctgcgaagaatttgcttcatcaacttcaagcatagcatctgc |
26987456 |
T |
|
| Q |
273 |
aactctcttcttagattgttcatctacctctctagcttt |
311 |
Q |
| |
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||||||||||| |||||||| || |||||| |||||| |
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| T |
26987455 |
tactctcttctttgattgttcctcggcctctcgagcttt |
26987417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 418 - 584
Target Start/End: Complemental strand, 26987301 - 26987135
Alignment:
| Q |
418 |
gcttcggcagccctagcagcttccttcatttttagagcagcaactaatctaatttcggatgttcttatcatagcttttgtctgttcaatatcagacattg |
517 |
Q |
| |
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||||| ||||| |||| ||||| ||||||||| || |||||||| || ||||||| ||| |||||||||||| |||| | ||||| ||||||| || |
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| T |
26987301 |
gcttctgcagctctagaagcttgcttcattttccttgccgcaactaacctgatttcggcagtttttatcatagcttctgtcagctcaatctcagacagtg |
26987202 |
T |
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| Q |
518 |
ctctcgtaacttctgatttcgcaacttctcccattttcttgaaatgttctgcctcggaactcaatcg |
584 |
Q |
| |
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|| | |||||||||||| ||| ||||| | |||| ||||| | || ||||| ||||||||||| |
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| T |
26987201 |
cttttaaaacttctgattttgcagattctctcttttttctgaaacgctcggcctctgaactcaatcg |
26987135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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