View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4355-Insertion-5 (Length: 510)

Name: NF4355-Insertion-5
Description: NF4355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4355-Insertion-5
NF4355-Insertion-5
[»] chr6 (9 HSPs)
chr6 (10-411)||(14227716-14228121)
chr6 (193-444)||(14221532-14221773)
chr6 (448-510)||(14226865-14226927)
chr6 (408-456)||(14226880-14226928)
chr6 (193-259)||(14221241-14221307)
chr6 (211-259)||(14221470-14221518)
chr6 (449-508)||(14221280-14221339)
chr6 (88-188)||(8573857-8573958)
chr6 (108-156)||(12771971-12772019)
[»] chr3 (6 HSPs)
chr3 (88-185)||(48936373-48936469)
chr3 (86-156)||(45818704-45818774)
chr3 (88-148)||(38457678-38457738)
chr3 (101-156)||(40416906-40416961)
chr3 (108-189)||(7038569-7038651)
chr3 (86-156)||(32490846-32490916)
[»] chr1 (6 HSPs)
chr1 (88-188)||(26793702-26793803)
chr1 (390-441)||(50391920-50391973)
chr1 (87-156)||(42472095-42472164)
chr1 (86-156)||(30209689-30209759)
chr1 (86-155)||(12855338-12855407)
chr1 (448-480)||(50391941-50391973)
[»] chr2 (1 HSPs)
chr2 (86-170)||(24447923-24448007)
[»] chr7 (4 HSPs)
chr7 (88-184)||(39644849-39644946)
chr7 (101-188)||(2334055-2334146)
chr7 (114-189)||(39594606-39594682)
chr7 (86-188)||(41482489-41482592)
[»] chr4 (4 HSPs)
chr4 (86-156)||(34666348-34666418)
chr4 (86-155)||(24155111-24155180)
chr4 (111-189)||(33451291-33451370)
chr4 (88-137)||(42964567-42964616)
[»] chr5 (3 HSPs)
chr5 (89-170)||(16290806-16290887)
chr5 (89-137)||(15416347-15416395)
chr5 (87-156)||(32529478-32529549)
[»] chr8 (3 HSPs)
chr8 (86-185)||(40028765-40028865)
chr8 (106-156)||(38503943-38503993)
chr8 (404-441)||(38291861-38291898)


Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 411
Target Start/End: Complemental strand, 14228121 - 14227716
Alignment:
Q  10 cataatactatatgttgggtattaggcaatgctccaagccgataaaagagagataccacatatcgacttaaaacagccgtttggtgcataggataagaag 109  Q
    |||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  14228121 cataatactatatgttgggtattaggcaatgctccaagtccataaa-gagagataccacatatcaacttaaaacagtcgtttggtgcataggataagaag 14228023  T
Q  110 acatgatatgataaaactatcttatcctatttcaatccgttgtttggagcgccgataggaa-tgataacttaaacctattagcctaatgagtcatccctt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||  ||||||||||||| |||    
T  14228022 acatgatatgataaaactatcttatcctatttcaatccgttgtttggagtgccgataggaaatgataacttaaacctattacgctaatgagtcatctctt 14227923  T
Q  209 ttataaatctaacattgtactacttcatatgcgatgtgagacttgttctcatcaccttctataacaagatctaacata----ggatctagtttttgatct 304  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||| |||    
T  14227922 ttataaatccaacattatactacttcatatgcgatgtgagacttgttctcatcaccttctataacaagatctaacatatataggatctagtttttgctct 14227823  T
Q  305 cccaccaagccgaaccaagggctatgatacaacatgtagggagagttcgcgtgttgccgaagaaataacaggctgatgctttcacgagcataatagagag 404  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14227822 cccaccaagccaaaccaagggctatgatacaacatgtagggagagttcgggtgttgccgaagaaataacaggctgatgctttcacgagcataatagagag 14227723  T
Q  405 acacgac 411  Q
    |||||||    
T  14227722 acacgac 14227716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 193 - 444
Target Start/End: Complemental strand, 14221773 - 14221532
Alignment:
Q  193 taatgagtcatcccttttataaatctaacattgtactacttcatatgcgatgtgagacttgttctcatcaccttctataacaagatctaacataggatct 292  Q
    |||||||||||| |||| ||||||  ||||||||||| ||||||||| ||||||||||||||||   |||||| ||||||||||||| ||||||          
T  14221773 taatgagtcatctctttaataaattcaacattgtactccttcatatgtgatgtgagacttgttc---tcacctcctataacaagatccaacata------ 14221683  T
Q  293 agtttttgatctcccaccaagccgaaccaagggctatgatacaacatgtagggagagttcgcgtgttgccgaagaaataacaggctgatgctttcacgag 392  Q
     ||||    ||| ||||||||||||||||  |||| ||||||||| ||  ||||||||||  ||||||| |||||||  ||||| |||||| ||||  ||    
T  14221682 cgtttgccctcttccaccaagccgaaccagtggctctgatacaacttgctgggagagttcaggtgttgcggaagaaaccacaggttgatgc-ttcataag 14221584  T
Q  393 cataatagagagacacgacatctctatccaaaaccttaagacattaggttaa 444  Q
    |||||||||||||||| | ||||  ||||||||  | |||||||||| ||||    
T  14221583 cataatagagagacaccatatcttcatccaaaatataaagacattagattaa 14221532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 448 - 510
Target Start/End: Complemental strand, 14226927 - 14226865
Alignment:
Q  448 gacatctctatccaaaaccttaagacattaggttaacgagacatctctcttattaatccaata 510  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  14226927 gacatctctatccaaaatcttaagacattaggttaacgagacatctctcttataaatccaata 14226865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 408 - 456
Target Start/End: Complemental strand, 14226928 - 14226880
Alignment:
Q  408 cgacatctctatccaaaaccttaagacattaggttaacgagacatctct 456  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14226928 cgacatctctatccaaaatcttaagacattaggttaacgagacatctct 14226880  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 14221307 - 14221241
Alignment:
Q  193 taatgagtcatcccttttataaatctaacattgtactacttcatatgcgatgtgagacttgttctca 259  Q
    |||||||||| | || ||||||||| ||||||| |||  ||||||||||||||||||||||||||||    
T  14221307 taatgagtcacctctcttataaatccaacattgcactcattcatatgcgatgtgagacttgttctca 14221241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 14221518 - 14221470
Alignment:
Q  211 ataaatctaacattgtactacttcatatgcgatgtgagacttgttctca 259  Q
    ||||||| | |||||||||  ||||||||||||||||||||||||||||    
T  14221518 ataaatccatcattgtactcattcatatgcgatgtgagacttgttctca 14221470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 508
Target Start/End: Complemental strand, 14221339 - 14221280
Alignment:
Q  449 acatctctatccaaaaccttaagacattaggttaacgagacatctctcttattaatccaa 508  Q
    ||||||| |||||||||||||| ||||||| |||| ||| || ||||||||| |||||||    
T  14221339 acatctccatccaaaaccttaatacattagattaatgagtcacctctcttataaatccaa 14221280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 188
Target Start/End: Complemental strand, 8573958 - 8573857
Alignment:
Q  88 gtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttggagcgccgataggaa-tgataacttaaaccta 186  Q
    |||| ||||| | |||||||| |||  |||||||||||| ||  |||||| |||||||||   |||||||||  | ||||||| ||||||||||||||||    
T  8573958 gtttcgtgcacatgataagaaaacagaatatgataaaacaattctatcctgtttcaatcctccgtttggagcatcaataggaaatgataacttaaaccta 8573859  T
Q  187 tt 188  Q
    ||    
T  8573858 tt 8573857  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 12772019 - 12771971
Alignment:
Q  108 agacatgatatgataaaactatcttatcctatttcaatccgttgtttgg 156  Q
    ||||||||||||||||  |||||||||| ||||| ||||| ||||||||    
T  12772019 agacatgatatgataactctatcttatcgtatttaaatcctttgtttgg 12771971  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 88 - 185
Target Start/End: Complemental strand, 48936469 - 48936373
Alignment:
Q  88 gtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttggagcgccgataggaatgataacttaaacct 185  Q
    ||||||||||||||||| ||||||| |||||||||| |||||| |||||| |||||||||||||||||| || || | ||||| ||||| ||||||||    
T  48936469 gtttggtgcataggataggaagacaggatatgataagactatcatatcctgtttcaatccgttgtttggtgcaccaacaggaa-gataatttaaacct 48936373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 45818774 - 45818704
Alignment:
Q  86 ccgtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttgg 156  Q
    |||||||||||  |||||||||||||| |||||||||| |||||| ||||||| || ||||||||||||||    
T  45818774 ccgtttggtgcgaaggataagaagacaggatatgataacactatcatatcctacttaaatccgttgtttgg 45818704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 38457678 - 38457738
Alignment:
Q  88 gtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccg 148  Q
    |||||||||||| | |||||||||||||||||||||||||||  |||| ||||||||||||    
T  38457678 gtttggtgcatatgttaagaagacatgatatgataaaactatactatcttatttcaatccg 38457738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 40416906 - 40416961
Alignment:
Q  101 gataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttgg 156  Q
    |||| ||||||| ||||||| ||||||||| ||||||  |||||||||||||||||    
T  40416906 gataggaagacaggatatgaaaaaactatcatatcctgcttcaatccgttgtttgg 40416961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 189
Target Start/End: Original strand, 7038569 - 7038651
Alignment:
Q  108 agacatgatatgataaaactatcttatcctatttcaatccgttgtttggagcgccgatagga-atgataacttaaacctatta 189  Q
    |||| ||||||||||||| ||||||||||||||| ||||| || |||||  | |  |||||| ||||||| ||||||||||||    
T  7038569 agacctgatatgataaaattatcttatcctatttaaatccattatttggtacactaataggatatgataaattaaacctatta 7038651  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 156
Target Start/End: Original strand, 32490846 - 32490916
Alignment:
Q  86 ccgtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttgg 156  Q
    |||||||||||  |||||||  ||||| |||||||||| |||||| ||| |||||| ||||| ||||||||    
T  32490846 ccgtttggtgcgcaggataaagagacaggatatgataacactatcatattctatttaaatcctttgtttgg 32490916  T

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Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 26793702 - 26793803
Alignment:
Q  88 gtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttggagcgccgatag-gaatgataacttaaaccta 186  Q
    |||||||||| | |||||||||||||||||||||| ||||||| ||||||  ||||||||||||||||| || || ||||  || |||||||||||| ||    
T  26793702 gtttggtgcacatgataagaagacatgatatgatagaactatcatatcctgattcaatccgttgtttggtgcaccaatagaaaaggataacttaaactta 26793801  T
Q  187 tt 188  Q
    ||    
T  26793802 tt 26793803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 441
Target Start/End: Original strand, 50391920 - 50391973
Alignment:
Q  390 gagcataatagaga--gacacgacatctctatccaaaaccttaagacattaggt 441  Q
    |||||||||||||   ||||||||||||| ||||||||||||||||||||||||    
T  50391920 gagcataatagaggttgacacgacatctccatccaaaaccttaagacattaggt 50391973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 42472164 - 42472095
Alignment:
Q  87 cgtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttgg 156  Q
    ||||||||||  ||||||||||||||  ||||||||| ||| || ||||||| || ||||||||||||||    
T  42472164 cgtttggtgcgcaggataagaagacagaatatgataacactgtcatatcctacttaaatccgttgtttgg 42472095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 156
Target Start/End: Original strand, 30209689 - 30209759
Alignment:
Q  86 ccgtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttgg 156  Q
    |||||||||||| | ||||||||| || | |||||||||| |||| ||||||| || |||| |||||||||    
T  30209689 ccgtttggtgcacatgataagaagtcagggtatgataaaattatcatatcctacttaaatctgttgtttgg 30209759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 12855407 - 12855338
Alignment:
Q  86 ccgtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttg 155  Q
    |||||||||||| | |||||| ||||| |||||||||  | |||| |||||||||| ||||| |||||||    
T  12855407 ccgtttggtgcacatgataaggagacaggatatgatatcattatcatatcctatttaaatccattgtttg 12855338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 448 - 480
Target Start/End: Original strand, 50391941 - 50391973
Alignment:
Q  448 gacatctctatccaaaaccttaagacattaggt 480  Q
    |||||||| ||||||||||||||||||||||||    
T  50391941 gacatctccatccaaaaccttaagacattaggt 50391973  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 86 - 170
Target Start/End: Original strand, 24447923 - 24448007
Alignment:
Q  86 ccgtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttggagcgccgataggaa 170  Q
    |||||||||||  |||||||| |||||||||||||| ||| ||| ||||||| | |||||||||||||||| | ||| |||||||    
T  24447923 ccgtttggtgcgcaggataaggagacatgatatgattaaaatattttatcctgtctcaatccgttgtttggtgtgcccataggaa 24448007  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 184
Target Start/End: Original strand, 39644849 - 39644946
Alignment:
Q  88 gtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttggagcgccgatag-gaatgataacttaaacc 184  Q
    ||||||||||   |||| ||||||| ||||||||||||||||| |||| |||||||||  ||||||||| ||||| ||||  || |||||||||||||    
T  39644849 gtttggtgcacgtgataggaagacaggatatgataaaactatcatatcatatttcaatttgttgtttggtgcgccaatagaaaaggataacttaaacc 39644946  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 2334146 - 2334055
Alignment:
Q  101 gataagaagacatgatatgataaaactatcttatcct--at-ttcaatccgttgtttggagcgccgataggaat-gataacttaaacctatt 188  Q
    |||||| |||||||||||||||| |||||| ||||||  || ||||||||| ||||||| || || |||||| | |||||||||||||||||    
T  2334146 gataaggagacatgatatgataacactatcatatcctgaatattcaatccggtgtttggtgcaccaataggattggataacttaaacctatt 2334055  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 189
Target Start/End: Original strand, 39594606 - 39594682
Alignment:
Q  114 gatatgataaaactatcttatcctatttcaatccgttgtttggagcgccgatagga-atgataacttaaacctatta 189  Q
    ||||||||||||||||| ||||||| || |||||||||||||| || || ||| || ||| ||| ||||||||||||    
T  39594606 gatatgataaaactatcatatcctacttaaatccgttgtttggtgcaccaataagatatgctaaattaaacctatta 39594682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 188
Target Start/End: Complemental strand, 41482592 - 41482489
Alignment:
Q  86 ccgtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttggagcgccgatagg-aatgataacttaaacc 184  Q
    |||||||||||| | |||| |||||||||||| |||||||||||| | ||||  || ||| || ||||||| || || | ||| || |||||||||||||    
T  41482592 ccgtttggtgcacatgataggaagacatgataggataaaactatcatctcctgatttaatgcgctgtttggtgcaccaacaggaaaggataacttaaacc 41482493  T
Q  185 tatt 188  Q
    ||||    
T  41482492 tatt 41482489  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 156
Target Start/End: Original strand, 34666348 - 34666418
Alignment:
Q  86 ccgtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttgg 156  Q
    |||||||||||| ||||||||||||||  |||||||| ||||||| |||| |  |||||| ||||||||||    
T  34666348 ccgtttggtgcacaggataagaagacagaatatgatacaactatcatatcttgcttcaatacgttgtttgg 34666418  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 86 - 155
Target Start/End: Original strand, 24155111 - 24155180
Alignment:
Q  86 ccgtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttg 155  Q
    |||||||||||| ||||||||||||||  ||||||||| |||||| | |||| ||||||||  |||||||    
T  24155111 ccgtttggtgcacaggataagaagacagaatatgataatactatcatgtcctgtttcaatcttttgtttg 24155180  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 33451291 - 33451370
Alignment:
Q  111 catgatatgataaaactatcttatcctatttcaatccgttgtttggagcgccgatagga-atgataacttaaacctatta 189  Q
    |||||||||||||||||||| ||||||| || ||| |||||||||| || || ||| || |||||||  |||||||||||    
T  33451291 catgatatgataaaactatcgtatcctacttaaattcgttgtttggtgcaccaatatgatatgataaaataaacctatta 33451370  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 137
Target Start/End: Complemental strand, 42964616 - 42964567
Alignment:
Q  88 gtttggtgcataggataagaagacatgatatgataaaactatcttatcct 137  Q
    |||||||||  |||||||| ||||| ||||||||||||||||| ||||||    
T  42964616 gtttggtgcgcaggataagcagacaggatatgataaaactatcctatcct 42964567  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 89 - 170
Target Start/End: Complemental strand, 16290887 - 16290806
Alignment:
Q  89 tttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttggagcgccgataggaa 170  Q
    ||||||||  |||||||  ||||| |||||||||||| ||||||||||| ||| ||||| |||||||| || || |||||||    
T  16290887 tttggtgcgcaggataaagagacaggatatgataaaattatcttatcctgtttaaatcctttgtttggtgctcccataggaa 16290806  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 15416395 - 15416347
Alignment:
Q  89 tttggtgcataggataagaagacatgatatgataaaactatcttatcct 137  Q
    ||||||||| | |||| ||||||||||||||||||||||||| ||||||    
T  15416395 tttggtgcacatgataggaagacatgatatgataaaactatcatatcct 15416347  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 32529549 - 32529478
Alignment:
Q  87 cgtttggtgcataggataagaagacatgatatgataaaactatc--ttatcctatttcaatccgttgtttgg 156  Q
    |||||| |||| | |||||||||||| |||||||||||||||||   |||| || ||||||||| |||||||    
T  32529549 cgtttgatgcacatgataagaagacaagatatgataaaactatcatatatcttacttcaatccgctgtttgg 32529478  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 185
Target Start/End: Original strand, 40028765 - 40028865
Alignment:
Q  86 ccgtttggtgcataggataagaagacatgatatgataaaactatcttatcctatttcaatccgttgtttggagcgccgatagg-aatgataacttaaacc 184  Q
    |||||||||||  |||||||| ||||| |||||||| ||| |||| ||||||   |||||| ||||||||| ||||| | ||| ||||||||||| ||||    
T  40028765 ccgtttggtgcgcaggataaggagacaggatatgattaaaatatcatatcctgcctcaatctgttgtttggtgcgccaacaggaaatgataactttaacc 40028864  T
Q  185 t 185  Q
    |    
T  40028865 t 40028865  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 156
Target Start/End: Complemental strand, 38503993 - 38503943
Alignment:
Q  106 gaagacatgatatgataaaactatcttatcctatttcaatccgttgtttgg 156  Q
    |||||||||||| |||||||||||| |||||| |||||||  |||||||||    
T  38503993 gaagacatgataggataaaactatcatatcctgtttcaatttgttgtttgg 38503943  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 441
Target Start/End: Complemental strand, 38291898 - 38291861
Alignment:
Q  404 gacacgacatctctatccaaaaccttaagacattaggt 441  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  38291898 gacacgacatcttcatccaaaaccttaagacattaggt 38291861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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