View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4355-Insertion-6 (Length: 501)
Name: NF4355-Insertion-6
Description: NF4355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4355-Insertion-6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 8 - 501
Target Start/End: Original strand, 33050157 - 33050644
Alignment:
| Q |
8 |
attggaatgataatgcttccaagaatgatgaaggttcaagtaaaaataaagaaagcttcgagaaagaatgagattcaatgatataatcttaaaaaatggg |
107 |
Q |
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| T |
33050157 |
attggaatgataaagcttccaagaatgattaaggtt-------aaataaagaaagcttcgagaaagaaggagattcaatgatataatcttaaaaaatggg |
33050249 |
T |
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| Q |
108 |
ggcattatgtatctgaatgcaagtccaagaaagttccaaggnnnnnnn-ggcgatgaatcacaggttgctcataatgaaggttatgattcagatgaagtc |
206 |
Q |
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| T |
33050250 |
ggcattatgtatctgaattcaagtccaagaaagttccaaggaaaaaaaaggcgatgaatcacaggttgctcataatgagggttatgattcagatgaagtc |
33050349 |
T |
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| Q |
207 |
ctcttgatggccacaatcaaaattggtgaggaacaaaatgatgaagatggtatatggatacatgatgctcaaattacataacaggttaaaagtcttggta |
306 |
Q |
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| T |
33050350 |
ctcttgatggctacaatcaaaattggtgaggaacaaaatgatgaagatggtatctggatacatgatgctcaaattacataacatgttaaaagtcttggta |
33050449 |
T |
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| Q |
307 |
ctctaaattagattattcaattaatagaaagataagatttgtagataatagtatagattatgttgaaggaaatggtaatgtgttgattcatagtagttta |
406 |
Q |
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| T |
33050450 |
ctctaaattagattattcaattaatagaaagataagattcgcagataatagtatcgattatgttgaaggaaatggtaatgtgttgattcatagtagttta |
33050549 |
T |
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| Q |
407 |
cttgtaacattaacaactcgataaatgttattgattctcttcgatttctcccaaaccatattcttttcaaattttcccaatttcctttttgttct |
501 |
Q |
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| T |
33050550 |
cttgtaacattaacaactcaataaaagtttttgattctcttcgatttctcccaaaccatattcttttcaaattttcccaatttcctttttgttct |
33050644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 99 - 399
Target Start/End: Original strand, 5313400 - 5313698
Alignment:
| Q |
99 |
aaaaatgggggcattatgtatctgaatgcaagtccaagaaagttccaaggnnnnnnnggcgatgaatcacaggttgctcataatgaaggttatgattcag |
198 |
Q |
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| T |
5313400 |
aaaaatgggggcaatatgaatctgaatgtaggtctaagagagttcaaaggaataaa-ggtgatgaagcacaatttgatcataatgattgttatgactcaa |
5313498 |
T |
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| Q |
199 |
atgaagtcctcttgatggccacaatcaaaattggtgaggaacaaaatgatgaagatggtatatggatacatgatgctcaaattacataacaggttaaaa- |
297 |
Q |
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| T |
5313499 |
atgaagtcttcttgttggctacaatcaaaactgatgatgaacataatggtgaa--tggtatatggatacacgatgctcaaatcatatgacaggtaaaaaa |
5313596 |
T |
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| Q |
298 |
gtcttggtactctaaattagattattcaattaatagaaagataagatttgtagataatagtatagattatgttgaaggaaatggtaatgtgttgattcat |
397 |
Q |
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| T |
5313597 |
gtcttggttctctgagttagatggttcaattagtaaaaagacaagatttgcaaataatagtatagtttgtgttaaaggaactagtaaagtattgattcat |
5313696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 362
Target Start/End: Complemental strand, 45495828 - 45495767
Alignment:
| Q |
301 |
ttggtactctaaattagattattcaattaatagaaagataagatttgtagataatagtatag |
362 |
Q |
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| T |
45495828 |
ttggttctctgaattagatgattcagttaatagaaaaataagatttgtagacaatagtatag |
45495767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 362
Target Start/End: Complemental strand, 45503570 - 45503509
Alignment:
| Q |
301 |
ttggtactctaaattagattattcaattaatagaaagataagatttgtagataatagtatag |
362 |
Q |
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| T |
45503570 |
ttggttctctgaattagatgattcagttaatagaaaaataagatttgtagacaatagtatag |
45503509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 28451933 - 28451893
Alignment:
| Q |
106 |
ggggcattatgtatctgaatgcaagtccaagaaagttccaa |
146 |
Q |
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| T |
28451933 |
ggggcattatgcatctgaatgcaagtctaagaaagttccaa |
28451893 |
T |
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