View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4355-Insertion-8 (Length: 380)
Name: NF4355-Insertion-8
Description: NF4355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4355-Insertion-8 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 42937514 - 42937715
Alignment:
| Q |
7 |
agttttaagtttgacatttctgtgtgaatgtggatttgcttaatgcagcaaatcctaatctcctataataattgtacatgtttgcatagtaaaattcttg |
106 |
Q |
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| T |
42937514 |
agttttaagtttgacatttctgtgtgaatgtggatttgc-------agcaaatcctaatctcctataataattgtacatgtttgcatagtaaaattcttg |
42937606 |
T |
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| Q |
107 |
tttggtctagtttgatttatttatttattttagttggagactttggaggcattcacaaactctcaattttttccttcaaagatggttatttgcagacaaa |
206 |
Q |
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| T |
42937607 |
tatggtctagtttgatttatttatttattttagttgtagactttggaggcattcacaaa--ctcaattttttccttcaaagatggtta-ttgcagacaaa |
42937703 |
T |
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| Q |
207 |
tagtagcatcta |
218 |
Q |
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|||||||||||| |
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| T |
42937704 |
tagtagcatcta |
42937715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 217 - 379
Target Start/End: Original strand, 42938691 - 42938852
Alignment:
| Q |
217 |
taatctaattcattattatgagcttaaaaaagaattgtcggtgaaccaggtcataaatattctaatgtgacacctttaagaggactctcccatactctta |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42938691 |
taatctaattcattattatgagcttaaaaaagaattgtcggtgaaccaggtcataaatattctaatgtgacacctttaagaggactctcccattctctta |
42938790 |
T |
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| Q |
317 |
agtgaacacatttttcttgcattcaatattattcactactattcatgtg--tcatttgagttata |
379 |
Q |
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| T |
42938791 |
tgtgaacacattt---ttgcattcaatattattcactactattcatgtgtctcatttgagttata |
42938852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 318 - 377
Target Start/End: Original strand, 27484267 - 27484323
Alignment:
| Q |
318 |
gtgaacacatttttcttgcattcaatattattcactactattcatgtgtcatttgagtta |
377 |
Q |
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|||||||||||||| |||| ||||| ||||||||| |||||||||||||||||||||| |
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| T |
27484267 |
gtgaacacattttt---gcatccaatagtattcactaatattcatgtgtcatttgagtta |
27484323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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