View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4355-Insertion-9 (Length: 337)

Name: NF4355-Insertion-9
Description: NF4355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4355-Insertion-9
NF4355-Insertion-9
[»] chr3 (3 HSPs)
chr3 (7-337)||(29566431-29566763)
chr3 (80-165)||(36157334-36157422)
chr3 (21-145)||(11309564-11309689)
[»] chr6 (4 HSPs)
chr6 (14-161)||(33822823-33822971)
chr6 (84-158)||(24577909-24577983)
chr6 (93-145)||(26525048-26525100)
chr6 (103-139)||(34571875-34571911)
[»] chr1 (2 HSPs)
chr1 (25-160)||(38232627-38232761)
chr1 (67-145)||(11866198-11866276)
[»] chr8 (2 HSPs)
chr8 (194-265)||(32907501-32907572)
chr8 (194-231)||(5830674-5830711)
[»] chr5 (1 HSPs)
chr5 (196-270)||(38956500-38956574)
[»] chr7 (3 HSPs)
chr7 (11-145)||(33810681-33810816)
chr7 (188-265)||(6643606-6643683)
chr7 (199-260)||(33810563-33810624)
[»] chr4 (1 HSPs)
chr4 (116-156)||(23767764-23767804)


Alignment Details
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 7 - 337
Target Start/End: Complemental strand, 29566763 - 29566431
Alignment:
Q  7 agtttggaatgaagttattttttcttctaaaacttgggagccgaaggagattgtaaa-gtcatcaaggtcaccacttggagatggtttattgctaaaaaa 105  Q
    |||||||||||  |||| |||||||||||||| ||||||| || ||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  29566763 agtttggaatggggttaatttttcttctaaaatttgggagtcggaggagattgtaaaagtcatcaaagtcaccacttagagatggtttattgctaaaaaa 29566664  T
Q  106 -ttaggggg-tccttgtttgtattacgaatgattttcgaaccgtctactttgtcttaattttgttgggnnnnnnnnnnnnctttggagggagtacccctt 203  Q
     |||||||| |||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||            ||| |||| ||||| |||||    
T  29566663 attagggggatccttgtttgtattacgaatgattttcgaaccctctactttatcttaactttgttggg--tgttttttttcttcggagcgagtatccctt 29566566  T
Q  204 gtacttttctcgagttgtgggttaagtattccatgtatttctctcattatctaataattttttatgttnnnnnnnnng-ttttttaacttatagaaaagt 302  Q
    ||| ||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||  ||||         | |||||||||||||||||||||    
T  29566565 gtaattttctcgaattgtgggttaagtactccatatacttctctcattatctaataatttttgctgttaaaaaaaaagtttttttaacttatagaaaagt 29566466  T
Q  303 tattaattattatcttagtatattttttccgttga 337  Q
    |||||||||||||||||||||||||||| ||||||    
T  29566465 tattaattattatcttagtatatttttttcgttga 29566431  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 165
Target Start/End: Complemental strand, 36157422 - 36157334
Alignment:
Q  80 cttggagatggtttattgctaaaaaattag---ggggtccttgtttgtattacgaatgattttcgaaccgtctactttgtcttaatttt 165  Q
    |||||||||| ||||||||||  |||||||   |||||| |||||| ||||||||||| |||| ||||| | | |||||||||||||||    
T  36157422 cttggagatgatttattgctaggaaattagttaggggtctttgtttatattacgaatggtttttgaaccctattctttgtcttaatttt 36157334  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 11309689 - 11309564
Alignment:
Q  21 ttattttttcttctaaaacttgggagccgaaggagattgta-aagtcatcaaggtcaccacttggagatggtttattgctaaaaaattagggggtccttg 119  Q
    |||||||||||||| ||  ||||||| |  ||||||||||| |||  ||||| |||||| |||| |||||  |||||| || |||||||| | ||| |||    
T  11309689 ttattttttcttcttaactttgggaggcataggagattgtagaagctatcaaagtcacctcttgaagatgacttattgttagaaaattagtgtgtctttg 11309590  T
Q  120 tttgtattacgaatgattttcgaacc 145  Q
    |||||||||| |||| |||| |||||    
T  11309589 tttgtattacaaatggtttttgaacc 11309564  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 161
Target Start/End: Complemental strand, 33822971 - 33822823
Alignment:
Q  14 aatgaagttattttttcttctaaaacttgggagccgaaggagattgtaaa-gtcatcaaggtcaccacttggagatggtttattgctaaaaaattagggg 112  Q
    ||||| ||||||||||||||||||||||||||| |  | ||||||||||| ||||||||  | ||| |||  ||||||||||||||||  |||||| ||     
T  33822971 aatgaggttattttttcttctaaaacttgggagtcagaagagattgtaaaagtcatcaaaattacctcttaaagatggtttattgctaggaaattaagga 33822872  T
Q  113 gtccttgtttgtattacgaatgattttcgaaccgtctactttgtcttaa 161  Q
     ||||| ||| |||||||||||||||||||||  |||| ||| ||||||    
T  33822871 atccttatttatattacgaatgattttcgaactctctattttatcttaa 33822823  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 24577909 - 24577983
Alignment:
Q  84 gagatggtttattgctaaaaaattagggggtccttgtttgtattacgaatgattttcgaaccgtctactttgtct 158  Q
    ||||||||||||| ||||||||| |||| |||||| |||||||||| |||| |||| ||||| |||  |||||||    
T  24577909 gagatggtttattactaaaaaatcagggtgtccttatttgtattacaaatggtttttgaaccctcttatttgtct 24577983  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 26525048 - 26525100
Alignment:
Q  93 tattgctaaaaaattagggggtccttgtttgtattacgaatgattttcgaacc 145  Q
    ||||||||  |||||||||||||||||||| |  |||||||||||||||||||    
T  26525048 tattgctaggaaattagggggtccttgtttatgctacgaatgattttcgaacc 26525100  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 34571875 - 34571911
Alignment:
Q  103 aaattagggggtccttgtttgtattacgaatgatttt 139  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  34571875 aaattagggggttcttgtttgtattacgaatggtttt 34571911  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 160
Target Start/End: Complemental strand, 38232761 - 38232627
Alignment:
Q  25 tttttcttctaaaacttgggagccgaaggagattgta-aagtcatcaaggtcaccacttggagatggtttattgctaaaaaattagggggtccttgtttg 123  Q
    |||||||||||||| ||||||| || ||||||||||| |||| ||||| |||||| |||| ||||||||||||| || |||||||| || ||||||||||    
T  38232761 tttttcttctaaaa-ttgggagacggaggagattgtagaagttatcaaagtcacctcttgaagatggtttattg-tagaaaattagtggatccttgtttg 38232664  T
Q  124 tattacgaatgattttcgaaccgtctactttgtctta 160  Q
    |||||  |||| |||| ||||| |||  |||||||||    
T  38232663 tattataaatggtttttgaaccctctcttttgtctta 38232627  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 145
Target Start/End: Complemental strand, 11866276 - 11866198
Alignment:
Q  67 atcaaggtcaccacttggagatggtttattgctaaaaaattagggggtccttgtttgtattacgaatgattttcgaacc 145  Q
    ||||| |||||| ||||||||||||||||| |||  ||||||||| ||| |||||||| |||| |||| ||||||||||    
T  11866276 atcaatgtcacctcttggagatggtttatttctaggaaattagggagtctttgtttgttttacaaatggttttcgaacc 11866198  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 265
Target Start/End: Original strand, 32907501 - 32907572
Alignment:
Q  194 agtaccccttgtacttttctcgagttgtgggttaagtattccatgtatttctctcattatctaataattttt 265  Q
    ||||||||||||||||| || ||||||||| ||||||| || ||||| ||||||| ||||||||||| ||||    
T  32907501 agtaccccttgtactttccttgagttgtggtttaagtactctatgtacttctctccttatctaataaatttt 32907572  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 5830711 - 5830674
Alignment:
Q  194 agtaccccttgtacttttctcgagttgtgggttaagta 231  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  5830711 agtaccccttgttcttttcccgagttgtgggttaagta 5830674  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 270
Target Start/End: Original strand, 38956500 - 38956574
Alignment:
Q  196 taccccttgtacttttctcgagttgtgggttaagtattccatgtatttctctcattatctaataattttttatgt 270  Q
    ||||||||||| |||||| || |||||||||||||| ||  |||| |||||| ||||| ||||||||||| ||||    
T  38956500 taccccttgtatttttcttgatttgtgggttaagtactctttgtacttctcttattatataataatttttgatgt 38956574  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 33810816 - 33810681
Alignment:
Q  11 tggaatgaagttattttttcttctaaaacttgggagccgaaggagattgta-aagtcatcaaggtcaccacttggagatggtttattgctaaaaaattag 109  Q
    ||||||||  ||||||||||||| ||||||||| || |  |||||||| || |||  ||||| |||||| ||| ||||| || |||| |||  |||||||    
T  33810816 tggaatgagattattttttcttccaaaacttggaaggcagaggagattctataagcaatcaaagtcacctcttagagatagtatatttctaggaaattag 33810717  T
Q  110 ggggtccttgtttgtattacgaatgattttcgaacc 145  Q
    | | || |||||||||||| ||||| ||||| ||||    
T  33810716 gcgatcattgtttgtattaagaatggttttcaaacc 33810681  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 265
Target Start/End: Complemental strand, 6643683 - 6643606
Alignment:
Q  188 ggagggagtaccccttgtacttttctcgagttgtgggttaagtattccatgtatttctctcattatctaataattttt 265  Q
    |||| ||||| || ||||| ||||||||| |||||| ||||||| |   ||||||||||||||||| |||||| ||||    
T  6643683 ggagcgagtatccgttgtatttttctcgatttgtggattaagtactgtttgtatttctctcattatataataaatttt 6643606  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 33810624 - 33810563
Alignment:
Q  199 cccttgtacttttctcgagttgtgggttaagtattccatgtatttctctcattatctaataa 260  Q
    |||||||||||||| ||| |||||||||||||| |   |||| ||||||| |||||||||||    
T  33810624 cccttgtacttttcccgatttgtgggttaagtactttttgtaattctctctttatctaataa 33810563  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 23767804 - 23767764
Alignment:
Q  116 cttgtttgtattacgaatgattttcgaaccgtctactttgt 156  Q
    |||||||||||||||| |||||||| |||||||| ||||||    
T  23767804 cttgtttgtattacgattgattttcaaaccgtcttctttgt 23767764  T

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