View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4355_low_2 (Length: 268)
Name: NF4355_low_2
Description: NF4355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4355_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 317715 - 317456
Alignment:
| Q |
1 |
caaaggtggtgaaatattgttcatgtatatcatctagaccaaccaaaatccaacttgtgacatgacaagagaatcttgtgccaacattataacnnnnnnn |
100 |
Q |
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| T |
317715 |
caaaggtggtgaaatattgttcatgtatatcatctagaccaaccaaaatccaacttgtgacatgacaagagaatcttgtgccaacattataacaaaaaaa |
317616 |
T |
|
| Q |
101 |
ttgttgatttctgttctatattctccaacttcaacattaactagggtcacc--nnnnnnnnnnnnnacatgttctcttgaaacacaaagttattagctgt |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
317615 |
ttgttgatttctgttctatattctccaacttcaacattaactagggtcaccatatatatatataaaacatgttctcttgaaacacaaagttattagctgt |
317516 |
T |
|
| Q |
199 |
gtgcctcttggaacaccaaactgataaacagttcatatgatttatattatatagtataat |
258 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
317515 |
gtgcctcttggaataccaaactgataaacagttcatatgatttatattatatagtataat |
317456 |
T |
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