View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4357-Insertion-10 (Length: 597)
Name: NF4357-Insertion-10
Description: NF4357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4357-Insertion-10 |
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| [»] chr3 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-169; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 113 - 589
Target Start/End: Complemental strand, 26656902 - 26656441
Alignment:
| Q |
113 |
tgaattgtgaaactaatttattaccggcaaccatgactaaagtaatgcacataattgcataggcaaaaaagagaagattgaaacggattgccatttttct |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26656902 |
tgaattgtgaaactaatttattaccggcaaccatgactaaagtaatgcacataattgcataggcaaaaaagagaagattgaaacggattgccattcttct |
26656803 |
T |
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| Q |
213 |
ttgcaaaacactttgcaataggctatttgagatttcttgtggttacattttttcgttacgttgggctatttaagatgataggggagttaatgaaataaat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26656802 |
ttgcaaaacactttgcaataggctatttgagatttcttgtggttacattttttcgttacgttgggctatttaagatgataggggagttaatgaaataaat |
26656703 |
T |
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| Q |
313 |
nnnnnnntcagcaataaatattttaactataataaatattgactagaatataattattgcactttaaatttaagttgaatgctttgaattgcatctactt |
412 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26656702 |
aaaaaaatcagaaata------------------aatattgactagaatataattattgcactttaaatttaagttgaatgctttgaattgcacctactt |
26656621 |
T |
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| Q |
413 |
aatttggttttatactatttttataaattttgactagaatataactattcatggatacccgggctcgattgatactttctttatattacgtccaagtcaa |
512 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| |||||||||||||||||||||||||||| |||| |
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| T |
26656620 |
aatttgtttttatactatttttataaattttgactagaatataactattcataggtaccc-ggctcaattgatactttctttatattacgtccaactcaa |
26656522 |
T |
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| Q |
513 |
tagcccattaacccactt----nnnnnnnnnntggacaaactcaaatatttttcacatgcgcacaacaaaagtcacttgac |
589 |
Q |
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| T |
26656521 |
tagcacattaacccacttgaaaaaaaataaattgggcaaactcaaatatttttcacacgcgcacaacaaaagtcacttgac |
26656441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 545 - 597
Target Start/End: Complemental strand, 18426105 - 18426053
Alignment:
| Q |
545 |
caaactcaaatatttttcacatgcgcacaacaaaagtcacttgacaatgttga |
597 |
Q |
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| T |
18426105 |
caaactcaaatatttttcacacgtgcacaacaaaagtcacttgataatgttga |
18426053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 541 - 583
Target Start/End: Complemental strand, 7886804 - 7886762
Alignment:
| Q |
541 |
tggacaaactcaaatatttttcacatgcgcacaacaaaagtca |
583 |
Q |
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| T |
7886804 |
tggacaaactcaaatatttttcacaagcgcacaacaaaagtca |
7886762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 26657002 - 26656968
Alignment:
| Q |
8 |
aaaacatcaactaaaatcatggttcctaattttat |
42 |
Q |
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| T |
26657002 |
aaaacatcaactaaaatcatggttcctaattttat |
26656968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 545 - 588
Target Start/End: Complemental strand, 10632790 - 10632747
Alignment:
| Q |
545 |
caaactcaaatatttttcacatgcgcacaacaaaagtcacttga |
588 |
Q |
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| T |
10632790 |
caaactcaaatatttttcacacgcgcacaacaaaagtcacttga |
10632747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 545 - 597
Target Start/End: Complemental strand, 3240418 - 3240366
Alignment:
| Q |
545 |
caaactcaaatatttttcacatgcgcacaacaaaagtcacttgacaatgttga |
597 |
Q |
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| T |
3240418 |
caaactcaaatatttttcacacgcgcacaacaaaagttacttgatgatgttga |
3240366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 530
Target Start/End: Complemental strand, 3240498 - 3240442
Alignment:
| Q |
474 |
ggctcgattgatactttctttatattacgtccaagtcaatagcccattaacccactt |
530 |
Q |
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||||| || |||| |||||||||| || |||||| ||||||||||||||||||||| |
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| T |
3240498 |
ggctcaatcgatattttctttatactaggtccaacccaatagcccattaacccactt |
3240442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 546 - 597
Target Start/End: Complemental strand, 22934942 - 22934891
Alignment:
| Q |
546 |
aaactcaaatatttttcacatgcgcacaacaaaagtcacttgacaatgttga |
597 |
Q |
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| T |
22934942 |
aaactcaaatatttttcacacgcgcgcaacaaaagtcacttgatgatgttga |
22934891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 530
Target Start/End: Original strand, 17036205 - 17036265
Alignment:
| Q |
470 |
cccgggctcgattgatactttctttatattacgtccaagtcaatagcccattaacccactt |
530 |
Q |
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| T |
17036205 |
cccgggctcaatcgattctttctttatatttcggccaacccaatagcctattaacccactt |
17036265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 530
Target Start/End: Original strand, 32342768 - 32342826
Alignment:
| Q |
472 |
cgggctcgattgatactttctttatattacgtccaagtcaatagcccattaacccactt |
530 |
Q |
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| T |
32342768 |
cgggctcaatcgatactttctttatattaggtccaacccaatagtccattaacccactt |
32342826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 530
Target Start/End: Original strand, 32355255 - 32355313
Alignment:
| Q |
472 |
cgggctcgattgatactttctttatattacgtccaagtcaatagcccattaacccactt |
530 |
Q |
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| T |
32355255 |
cgggctcaatcgatactttctttatattaggtccaacccaatagtccattaacccactt |
32355313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 530
Target Start/End: Original strand, 32359373 - 32359431
Alignment:
| Q |
472 |
cgggctcgattgatactttctttatattacgtccaagtcaatagcccattaacccactt |
530 |
Q |
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||||||| || |||||||||||||||||| |||||| |||||| |||||||||||||| |
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| T |
32359373 |
cgggctcaatcgatactttctttatattaggtccaacccaatagtccattaacccactt |
32359431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 530
Target Start/End: Original strand, 32371909 - 32371967
Alignment:
| Q |
472 |
cgggctcgattgatactttctttatattacgtccaagtcaatagcccattaacccactt |
530 |
Q |
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||||||| || |||||||||||||||||| |||||| |||||| |||||||||||||| |
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| T |
32371909 |
cgggctcaatcgatactttctttatattaggtccaacccaatagtccattaacccactt |
32371967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 597
Target Start/End: Original strand, 32371996 - 32372041
Alignment:
| Q |
552 |
aaatatttttcacatgcgcacaacaaaagtcacttgacaatgttga |
597 |
Q |
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|||||||||||||| ||||||| |||||||||||||| ||||||| |
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| T |
32371996 |
aaatatttttcacacgcgcacaccaaaagtcacttgatgatgttga |
32372041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 545 - 597
Target Start/End: Complemental strand, 19519086 - 19519034
Alignment:
| Q |
545 |
caaactcaaatatttttcacatgcgcacaacaaaagtcacttgacaatgttga |
597 |
Q |
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||||||||||||||||| ||| ||| |||||||||||||||||| ||||||| |
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| T |
19519086 |
caaactcaaatattttttacacgcgtacaacaaaagtcacttgatgatgttga |
19519034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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