View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4357-Insertion-12 (Length: 560)
Name: NF4357-Insertion-12
Description: NF4357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4357-Insertion-12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 7 - 560
Target Start/End: Original strand, 54885883 - 54886436
Alignment:
| Q |
7 |
agataaaagcaatttactgcttaaacggtgcataacggcagtgttatggagtctttggaaacaccgtaaccttaaattgtggcaaaacgaacaagagctg |
106 |
Q |
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| T |
54885883 |
agataaaagcaatttactgcttaaacagcgcatggcggcagtgttatggagcctttggaaacaccgtaaccttaaattttggcaaaacgaacaagagctg |
54885982 |
T |
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| Q |
107 |
tgtgttcatgttgttgatccgggctcgacacttaatggacgaatggctgtcagcgcaacctcactctcagccttcatctatgcagaacaggtcagaacat |
206 |
Q |
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| T |
54885983 |
tgtgttcatgtttttgatccgggctcgacacttaatggacgaatggctgtcagcgcaacctcagtctcagccttcatctatgcagaacaggtcagaacat |
54886082 |
T |
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| Q |
207 |
gccagaggcacctctcagcagcgcctacaatcacagtctcggcatgtgcgtccaccgtcagcaagtccttctctgtggcagaaaccacatcccggtagag |
306 |
Q |
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| T |
54886083 |
gccagaggcacctctcagcagctcctacaatcacagtctcggcatgtgcatccaccgtcagcaagtccttctctgtggcagaaaccacaacccggtagag |
54886182 |
T |
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| Q |
307 |
taaagtgtaacattgacgcttcttctcttcctcttggaaccgtacaggtattggggtctgtttacgcgatgaagatggcacctttatccttgctcaaact |
406 |
Q |
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| T |
54886183 |
taaagtgtaacattgacgcttcttctcttcctcttggaaccgtacaggtattggggcctgtttacgcgatgaagatggcacctttatccttgctcaaact |
54886282 |
T |
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| Q |
407 |
atgagttttcctataaagtactctgttgatgttggggaagctcttggtttgtttcatgcattgcaatggttagcagacatgcaattcgatagtgtggatt |
506 |
Q |
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| T |
54886283 |
atgagttttcctataaagtactctgttgatgttggggaagctcttggtttgtttcatgcattgcaatggttagcagacatgcaattcgatggtgtggatt |
54886382 |
T |
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| Q |
507 |
ttatggtcgactccaaggtaactgcagatgcttttaattctcaccgccatgatg |
560 |
Q |
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| T |
54886383 |
ttatggtcgactccaaggtaactgcagatgcttttaattctcaccgccatgatg |
54886436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 435 - 549
Target Start/End: Original strand, 32111662 - 32111776
Alignment:
| Q |
435 |
atgttggggaagctcttggtttgtttcatgcattgcaatggttagcagacatgcaattcgatagtgtggattttatggtcgactccaaggtaactgcaga |
534 |
Q |
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| T |
32111662 |
atgttggcgaagctcttggtttgctacacgcactacaatggttggcagacatgcaattcgataatgttgattttgtggcggactcaaaggtaatagctga |
32111761 |
T |
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| Q |
535 |
tgcttttaattctca |
549 |
Q |
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| T |
32111762 |
tgctttcaattctca |
32111776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 542
Target Start/End: Complemental strand, 43067018 - 43066919
Alignment:
| Q |
443 |
gaagctcttggtttgtttcatgcattgcaatggttagcagacatgcaattcgatagtgtggattttatggtcgactccaaggtaactgcagatgctttta |
542 |
Q |
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| T |
43067018 |
gaagctcttgggttgttttttgcattatagtggttagtagacatgcatttcgacagtgtggattttgtggtagattcgaagctcacaacagatgctttta |
43066919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 21699883 - 21699833
Alignment:
| Q |
50 |
ttatggagtctttggaaacaccgtaaccttaaattgtggcaaaacgaacaa |
100 |
Q |
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| T |
21699883 |
ttatggagtctttggaaacaccgcaagctcaaattatggcaaaatgaacaa |
21699833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 10518471 - 10518511
Alignment:
| Q |
53 |
tggagtctttggaaacaccgtaaccttaaattgtggcaaaa |
93 |
Q |
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| T |
10518471 |
tggagtatttggaagcaccgtaaccttaagttgtggcaaaa |
10518511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 528
Target Start/End: Original strand, 10493583 - 10493699
Alignment:
| Q |
412 |
ttttcctataaagtactctgttgatgttggggaagctcttggtttgtttcatgcattgcaatggttagcagacatgcaattcgatagtgtggattttatg |
511 |
Q |
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| T |
10493583 |
ttttccaacaaagtactcagttgatgtgggtgaagatctgagcttgttctatgcgttacaatggttggcattaatgcagttcgatagtgtggattttatg |
10493682 |
T |
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| Q |
512 |
gtcgactccaaggtaac |
528 |
Q |
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| T |
10493683 |
actgactcaaaggtaac |
10493699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 527
Target Start/End: Original strand, 28172657 - 28172717
Alignment:
| Q |
467 |
ttgcaatggttagcagacatgcaattcgatagtgtggattttatggtcgactccaaggtaa |
527 |
Q |
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| T |
28172657 |
ttgcaatggttggcggatatgcaattcgatagggtcgattttgtggttgactcaaaggtaa |
28172717 |
T |
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