View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4357-Insertion-14 (Length: 276)

Name: NF4357-Insertion-14

Description: NF4357

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF4357-Insertion-14

[»] chr7 (5 HSPs)

Alignment Details

Target: chr7 (Bit Score: 146; Significance: 6e-77; HSPs: 5)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 146; E-Value: 6e-77

Query Start/End: Original strand, 116 - 276

Target Start/End: Complemental strand, 28787471 - 28787310

Alignment:

Q	116	cacgtttcatatttcacaagtatttcaaggcaggaaagttagataat-aattactgatcaagagagtaaattagaggtacatacagcacttaggttaagt	214	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28787471	cacgtttcatatttcacaagtatttcaaggcaggaaagttagataattaattactgatcaagagagtaaattagaggtacatacaccacttaggttaagt	28787372	T

Q	215	gttaatactggttgtgcacaagaaaatgagctagaaactcacatattgattcggataggcgt	276	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28787371	gttaatattggttgtgcacaagaaaatgagctagaaactcacatattgattcggataggcgt	28787310	T

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Target: chr7; HSP #2

Raw Score: 84; E-Value: 6e-40

Query Start/End: Original strand, 154 - 241

Target Start/End: Complemental strand, 28773575 - 28773488

Alignment:

Q	154	ttagataataattactgatcaagagagtaaattagaggtacatacagcacttaggttaagtgttaatactggttgtgcacaagaaaat	241	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28773575	ttagataataattactgatcaagagagtaaattagaggtacatacaccacttaggttaagtgttaatactggttgtgcacaagaaaat	28773488	T

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Target: chr7; HSP #3

Raw Score: 47; E-Value: 7e-18

Query Start/End: Original strand, 28 - 74

Target Start/End: Complemental strand, 28787564 - 28787518

Alignment:

Q	28	ctttcagaaattaaacgggaccttagtttcaaaaggagtaacactgc	74	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28787564	ctttcagaaattaaacgggaccttagtttcaaaaggagtaacactgc	28787518	T

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Target: chr7; HSP #4

Raw Score: 40; E-Value: 0.0000000000001

Query Start/End: Original strand, 29 - 68

Target Start/End: Complemental strand, 28773717 - 28773678

Alignment:

Q	29	tttcagaaattaaacgggaccttagtttcaaaaggagtaa	68	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28773717	tttcagaaattaaacgggaccttagtttcaaaaggagtaa	28773678	T

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Target: chr7; HSP #5

Raw Score: 30; E-Value: 0.00000009

Query Start/End: Original strand, 243 - 276

Target Start/End: Complemental strand, 28773460 - 28773427

Alignment:

Q	243	agctagaaactcacatattgattcggataggcgt	276	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28773460	agctagaaactcacattttgattcggataggcgt	28773427	T

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