View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4357-Insertion-15 (Length: 99)

Name: NF4357-Insertion-15
Description: NF4357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4357-Insertion-15
NF4357-Insertion-15
[»] chr2 (1 HSPs)
chr2 (8-99)||(17438808-17438899)
[»] chr6 (13 HSPs)
chr6 (9-99)||(33264659-33264749)
chr6 (17-99)||(33402632-33402714)
chr6 (17-99)||(33273810-33273892)
chr6 (17-99)||(33306504-33306586)
chr6 (17-99)||(33642582-33642664)
chr6 (17-99)||(9168792-9168874)
chr6 (17-98)||(33390090-33390171)
chr6 (8-99)||(31567108-31567199)
chr6 (8-99)||(33059572-33059663)
chr6 (17-95)||(31560793-31560871)
chr6 (24-99)||(33360104-33360179)
chr6 (8-99)||(33411962-33412053)
chr6 (17-99)||(33287560-33287642)
[»] scaffold1749 (1 HSPs)
scaffold1749 (9-95)||(9-95)
[»] scaffold0428 (1 HSPs)
scaffold0428 (9-95)||(8770-8856)
[»] chr4 (8 HSPs)
chr4 (11-93)||(31019800-31019882)
chr4 (11-93)||(31489664-31489746)
chr4 (11-93)||(31029681-31029763)
chr4 (50-94)||(31496912-31496956)
chr4 (52-93)||(31476960-31477001)
chr4 (13-93)||(31159251-31159331)
chr4 (50-93)||(31150387-31150430)
chr4 (52-93)||(31502082-31502123)
[»] chr8 (6 HSPs)
chr8 (50-96)||(12177317-12177363)
chr8 (50-96)||(12188638-12188684)
chr8 (50-96)||(12421745-12421791)
chr8 (50-96)||(12433066-12433112)
chr8 (56-91)||(6046497-6046532)
chr8 (56-91)||(6062740-6062775)


Alignment Details
Target: chr2 (Bit Score: 92; Significance: 3e-45; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 3e-45
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 17438899 - 17438808
Alignment:
Q  8 agatgcatcaaatcgatgagagatttggccatataaatccaaagcaagggttgtcttccctattcctcccatcccccaaattcctatagcac 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17438899 agatgcatcaaatcgatgagagatttggccatataaatccaaagcaagggttgtcttccctattcctcccatcccccaaattcctatagcac 17438808  T

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Target: chr6 (Bit Score: 79; Significance: 2e-37; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 33264659 - 33264749
Alignment:
Q  9 gatgcatcaaatcgatgagagatttggccatataaatccaaagcaagggttgtcttccctattcctcccatcccccaaattcctatagcac 99  Q
    |||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33264659 gatgcatcaaatcgatgacagatttggccatataaattcatagcaagggttgtcttccctattcctcccatcccccaaattcctatagcac 33264749  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 6e-28
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 33402632 - 33402714
Alignment:
Q  17 aaatcgatgagagatttggccatataaatccaaagcaagggttgtcttccctattcctcccatcccccaaattcctatagcac 99  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| || ||||||| ||||||||    
T  33402632 aaatcgatgagagatttggccatataaattcatagcaagggttgtcttccctattcctcccattccacaaattcttatagcac 33402714  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 4e-23
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 33273810 - 33273892
Alignment:
Q  17 aaatcgatgagagatttggccatataaatccaaagcaagggttgtcttccctattcctcccatcccccaaattcctatagcac 99  Q
    |||||||||||| |||||  |||||||| ||| |||||||||||||||||||||||||||||| || ||||||||||||||||    
T  33273810 aaatcgatgagatatttgatcatataaagccatagcaagggttgtcttccctattcctcccattccacaaattcctatagcac 33273892  T

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Target: chr6; HSP #4
Raw Score: 55; E-Value: 4e-23
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 33306504 - 33306586
Alignment:
Q  17 aaatcgatgagagatttggccatataaatccaaagcaagggttgtcttccctattcctcccatcccccaaattcctatagcac 99  Q
    |||||||||||| |||||| |||||||| ||| |||||||||||||||||||||||||||||| ||  |||||||||||||||    
T  33306504 aaatcgatgagatatttggtcatataaagccatagcaagggttgtcttccctattcctcccattccagaaattcctatagcac 33306586  T

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Target: chr6; HSP #5
Raw Score: 55; E-Value: 4e-23
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 33642664 - 33642582
Alignment:
Q  17 aaatcgatgagagatttggccatataaatccaaagcaagggttgtcttccctattcctcccatcccccaaattcctatagcac 99  Q
    |||||||||||| |||||| |||||||| ||  |||||||||||||||||||||||||||||| || ||||||||||||||||    
T  33642664 aaatcgatgagatatttggtcatataaagccgtagcaagggttgtcttccctattcctcccattccacaaattcctatagcac 33642582  T

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Target: chr6; HSP #6
Raw Score: 51; E-Value: 9e-21
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 9168792 - 9168874
Alignment:
Q  17 aaatcgatgagagatttggccatataaatccaaagcaagggttgtcttccctattcctcccatcccccaaattcctatagcac 99  Q
    |||||||||||| |||||| |||||||| |||  ||||| ||||||||||||||||||||||| || ||||||||||||||||    
T  9168792 aaatcgatgagatatttggtcatataaaaccattgcaagagttgtcttccctattcctcccattccacaaattcctatagcac 9168874  T

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Target: chr6; HSP #7
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 33390090 - 33390171
Alignment:
Q  17 aaatcgatgagagatttggccatataaatccaaagcaagggttgtcttccctattcctcccatcccccaaattcctatagca 98  Q
    |||||||||||| |||||| ||||||||  ||  ||||||||||||||||||||||||||||| || |||||||||||||||    
T  33390090 aaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctattcctcccattccacaaattcctatagca 33390171  T

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Target: chr6; HSP #8
Raw Score: 48; E-Value: 5e-19
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 31567199 - 31567108
Alignment:
Q  8 agatgcatcaaatcgatgagagatttggccatataaatccaaagcaagggttgtcttccctattcctcccatcccccaaattcctatagcac 99  Q
    |||||||  |||||||||||| |||||||||||||||  |  |||||||| ||||||||||||||| ||||| || ||||||||||||||||    
T  31567199 agatgcactaaatcgatgagatatttggccatataaagtctcagcaagggctgtcttccctattccccccattccacaaattcctatagcac 31567108  T

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Target: chr6; HSP #9
Raw Score: 48; E-Value: 5e-19
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 33059572 - 33059663
Alignment:
Q  8 agatgcatcaaatcgatgagagatttggccatataaatccaaagcaagggttgtcttccctattcctcccatcccccaaattcctatagcac 99  Q
    |||||||  |||| ||||||| |||||||||||||||  |  |||||||||||| ||||||||||||||||| || ||||||||||||||||    
T  33059572 agatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattcctatagcac 33059663  T

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Target: chr6; HSP #10
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 31560871 - 31560793
Alignment:
Q  17 aaatcgatgagagatttggccatataaatccaaagcaagggttgtcttccctattcctcccatcccccaaattcctata 95  Q
    |||||||||||| ||||||||||| |||  || |||||||| ||||||||||||||||||||| || ||||||||||||    
T  31560871 aaatcgatgagatatttggccatacaaagtcatagcaagggctgtcttccctattcctcccattccacaaattcctata 31560793  T

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Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 33360104 - 33360179
Alignment:
Q  24 tgagagatttggccatataaatccaaagcaagggttgtcttccctattcctcccatcccccaaattcctatagcac 99  Q
    |||||||||||||||||||||  |  |||||||||||| ||||| |||||||| || || ||||||||||||||||    
T  33360104 tgagagatttggccatataaagtcgtagcaagggttgttttcccaattcctccaattccacaaattcctatagcac 33360179  T

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Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 33411962 - 33412053
Alignment:
Q  8 agatgcatcaaatcgatgagagatttggccatataaatccaaagcaagggttgtcttccctattcctcccatcccccaaattcctatagcac 99  Q
    |||||||  |||| ||||||| || ||||||||||||  || ||||||||||||||| |||||||| ||||| || |||||||| |||||||    
T  33411962 agatgcactaaattgatgagatatctggccatataaagtcatagcaagggttgtctttcctattccgcccattccacaaattccaatagcac 33412053  T

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Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 33287560 - 33287642
Alignment:
Q  17 aaatcgatgagagatttggccatataaatccaaagcaagggttgtcttccctattcctcccatcccccaaattcctatagcac 99  Q
    ||||||||| || |||||  |||||||| ||| || ||||||||| ||||||||||||||||| || ||||||||||| ||||    
T  33287560 aaatcgatgggatatttgatcatataaagccatagaaagggttgttttccctattcctcccattccacaaattcctattgcac 33287642  T

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Target: scaffold1749 (Bit Score: 75; Significance: 4e-35; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 75; E-Value: 4e-35
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 9 - 95
Alignment:
Q  9 gatgcatcaaatcgatgagagatttggccatataaatccaaagcaagggttgtcttccctattcctcccatcccccaaattcctata 95  Q
    |||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  9 gatgcatcaaatcgatgacagatttggccatataaattcatagcaagggttgtcttccctattcctcccatcccccaaattcctata 95  T

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Target: scaffold0428 (Bit Score: 75; Significance: 4e-35; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 75; E-Value: 4e-35
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 8770 - 8856
Alignment:
Q  9 gatgcatcaaatcgatgagagatttggccatataaatccaaagcaagggttgtcttccctattcctcccatcccccaaattcctata 95  Q
    |||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  8770 gatgcatcaaatcgatgacagatttggccatataaattcatagcaagggttgtcttccctattcctcccatcccccaaattcctata 8856  T

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Target: chr4 (Bit Score: 43; Significance: 5e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 5e-16
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 31019800 - 31019882
Alignment:
Q  11 tgcatcaaatcgatgagagatttggccatataaatccaaagcaagggttgtcttccctattcctcccatcccccaaattccta 93  Q
    |||||||||| ||||||||||||| ||||||||| |   ||| || ||||||||||||||||| |||||||| ||||||||||    
T  31019800 tgcatcaaattgatgagagatttgaccatataaagcagtagccagagttgtcttccctattccacccatcccacaaattccta 31019882  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 5e-16
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 31489746 - 31489664
Alignment:
Q  11 tgcatcaaatcgatgagagatttggccatataaatccaaagcaagggttgtcttccctattcctcccatcccccaaattccta 93  Q
    |||||||||| ||||||||||||| ||||||||| |   ||| || ||||||||||||||||| |||||||| ||||||||||    
T  31489746 tgcatcaaattgatgagagatttgaccatataaagcagtagccagagttgtcttccctattccacccatcccacaaattccta 31489664  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 31029681 - 31029763
Alignment:
Q  11 tgcatcaaatcgatgagagatttggccatataaatccaaagcaagggttgtcttccctattcctcccatcccccaaattccta 93  Q
    |||||||||| ||||||||||||| ||||||||| |   ||  || ||||||||||||||||| |||||||| ||||||||||    
T  31029681 tgcatcaaattgatgagagatttgaccatataaagcagtagtcagagttgtcttccctattccacccatcccacaaattccta 31029763  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 31496956 - 31496912
Alignment:
Q  50 agcaagggttgtcttccctattcctcccatcccccaaattcctat 94  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||    
T  31496956 agcaagggtagtcttccctattcctcccatcccacaaattcctat 31496912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 31477001 - 31476960
Alignment:
Q  52 caagggttgtcttccctattcctcccatcccccaaattccta 93  Q
    |||||||||||||||||||||| |||||||| ||||||||||    
T  31477001 caagggttgtcttccctattccacccatcccacaaattccta 31476960  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 31159251 - 31159331
Alignment:
Q  13 catcaaatcgatgagagatttggccatataaatccaaagcaagggttgtcttccctattcctcccatcccccaaattccta 93  Q
    ||||||||||||||||||||   ||| ||||| |   || ||| ||||||||||||||||| |||||||| ||||||||||    
T  31159251 catcaaatcgatgagagattctaccacataaagcagtagtaagagttgtcttccctattccacccatcccacaaattccta 31159331  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 93
Target Start/End: Original strand, 31150387 - 31150430
Alignment:
Q  50 agcaagggttgtcttccctattcctcccatcccccaaattccta 93  Q
    |||||||||||||||||||| ||| |||||||| ||||||||||    
T  31150387 agcaagggttgtcttccctactccacccatcccacaaattccta 31150430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 31502123 - 31502082
Alignment:
Q  52 caagggttgtcttccctattcctcccatcccccaaattccta 93  Q
    |||||||||||||||||||||| |||||||| || |||||||    
T  31502123 caagggttgtcttccctattccacccatcccacagattccta 31502082  T

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Target: chr8 (Bit Score: 31; Significance: 0.000000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 12177317 - 12177363
Alignment:
Q  50 agcaagggttgtcttccctattcctcccatcccccaaattcctatag 96  Q
    ||||||||||||||| ||||| |||||||| ||||||||||| ||||    
T  12177317 agcaagggttgtctttcctatgcctcccatgccccaaattccaatag 12177363  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 12188638 - 12188684
Alignment:
Q  50 agcaagggttgtcttccctattcctcccatcccccaaattcctatag 96  Q
    ||||||||||||||| ||||| |||||||| ||||||||||| ||||    
T  12188638 agcaagggttgtctttcctatgcctcccatgccccaaattccaatag 12188684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 12421745 - 12421791
Alignment:
Q  50 agcaagggttgtcttccctattcctcccatcccccaaattcctatag 96  Q
    ||||||||||||||| ||||| |||||||| ||||||||||| ||||    
T  12421745 agcaagggttgtctttcctatgcctcccatgccccaaattccaatag 12421791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 12433066 - 12433112
Alignment:
Q  50 agcaagggttgtcttccctattcctcccatcccccaaattcctatag 96  Q
    ||||||||||||||| ||||| |||||||| ||||||||||| ||||    
T  12433066 agcaagggttgtctttcctatgcctcccatgccccaaattccaatag 12433112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 91
Target Start/End: Original strand, 6046497 - 6046532
Alignment:
Q  56 ggttgtcttccctattcctcccatcccccaaattcc 91  Q
    |||||||||||||||||| ||||| |||||||||||    
T  6046497 ggttgtcttccctattccacccatgccccaaattcc 6046532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 91
Target Start/End: Original strand, 6062740 - 6062775
Alignment:
Q  56 ggttgtcttccctattcctcccatcccccaaattcc 91  Q
    ||||||||| |||||||||||||| |||||||||||    
T  6062740 ggttgtctttcctattcctcccatgccccaaattcc 6062775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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