View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4357-Insertion-17 (Length: 174)
Name: NF4357-Insertion-17
Description: NF4357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4357-Insertion-17 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 7 - 174
Target Start/End: Complemental strand, 45075787 - 45075620
Alignment:
| Q |
7 |
acaaatgaaaatcactaggccatacatgattgagattatgtattctgatcaaatccaaatatccaatctcactttgatcaattccccttcttggtttgtc |
106 |
Q |
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| T |
45075787 |
acaaatgaaaatcactaggccatacatgattgagattatgtattctgatcaaatccaaatatccaatctcactttgatcaattccccttcttggtttgtc |
45075688 |
T |
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| Q |
107 |
catccagtttacagcaggtttgattagtcaccatcttcaaatttttcaaccttatttttctaagtata |
174 |
Q |
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| T |
45075687 |
catccagtttacagcaggtttgattagtcaccatcttcaaatttttcaaccttatttttctaagtata |
45075620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 4e-55
Query Start/End: Original strand, 7 - 163
Target Start/End: Complemental strand, 45083217 - 45083061
Alignment:
| Q |
7 |
acaaatgaaaatcactaggccatacatgattgagattatgtattctgatcaaatccaaatatccaatctcactttgatcaattccccttcttggtttgtc |
106 |
Q |
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| T |
45083217 |
acaattgaaaatcactaggccatatatgattgagattatgtattctgatcaaatccaaatatcaaatctcactttggtcaattccccttcttggtttgta |
45083118 |
T |
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| Q |
107 |
catccagtttacagcaggtttgattagtcaccatcttcaaatttttcaaccttattt |
163 |
Q |
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| T |
45083117 |
catccagtttacagcaggtttgacgagtcacaatttttaaatttctcaactttattt |
45083061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 7 - 160
Target Start/End: Complemental strand, 45068170 - 45068017
Alignment:
| Q |
7 |
acaaatgaaaatcactaggccatacatgattgagattatgtattctgatcaaatccaaatatccaatctcactttgatcaattccccttcttggtttgtc |
106 |
Q |
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| T |
45068170 |
acaattgaaaatcactaggccatatatgattgagattatgtattctgatcaaatccaaatatcaaatctcactttgatcaactctcctaattggtttgtc |
45068071 |
T |
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| Q |
107 |
catccagtttacagcaggtttgattagtcaccatcttcaaatttttcaacctta |
160 |
Q |
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| T |
45068070 |
catccaatttacagcaggtttgatgagtcgccattttcaaatttctcaacctta |
45068017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 5e-36
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 45078881 - 45078769
Alignment:
| Q |
18 |
tcactaggccatacatgattgagattatgtattctgatcaaatccaaatatccaatctcactttgatcaattccccttcttggtttgtccatccagttta |
117 |
Q |
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| T |
45078881 |
tcactagaccatacatgattgagattatgtattctgatcaaatccaaatatcaaatctcactttgatcaactctccaacatggtttgttcatccaattta |
45078782 |
T |
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| Q |
118 |
cagcaggtttgat |
130 |
Q |
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| T |
45078781 |
cagcaggtttgat |
45078769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 7 - 151
Target Start/End: Complemental strand, 34505589 - 34505445
Alignment:
| Q |
7 |
acaaatgaaaatcactaggccatacatgattgagattatgtattctgatcaaatccaaatatccaatctcactttgatcaattccccttcttggtttgtc |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34505589 |
acaattgaaaatcactaggccatacatgattgagattttgtattctgatcaaatccaaatatcaaatctcactttgatcaattccccttcttggtttgtc |
34505490 |
T |
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| Q |
107 |
catccagtttacagcaggtttgattagtcaccatcttcaaatttt |
151 |
Q |
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| T |
34505489 |
catccaacttacagcaggtttgataatgcaccattttcaattttt |
34505445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 17588012 - 17587920
Alignment:
| Q |
12 |
tgaaaatcactaggccatacatgattgagattatgtattctgatcaaatccaaatatccaatctcactttgatcaattccccttcttggtttg |
104 |
Q |
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||||| |||| ||||||||| ||||||||||||||| ||| | |||| |||||||| ||||| |||||| | ||||| || |||||||||| |
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| T |
17588012 |
tgaaactcaccaggccatacttgattgagattatgttctctaacaaaattcaaatatcaaatcttactttgtttaattctccatcttggtttg |
17587920 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 41333454 - 41333560
Alignment:
| Q |
20 |
actaggccatacatgattgagattatgtattctgatcaaatccaaatatccaatctcactttgatcaattccccttcttggtttgtccatccagtttaca |
119 |
Q |
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| T |
41333454 |
actaggccttacctgattgaaatcatgtactcggataatatacagatatccaatcttactttggttaattctccatcctggaatgtccatcctgtttaca |
41333553 |
T |
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| Q |
120 |
gcaggtt |
126 |
Q |
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| T |
41333554 |
gcaggtt |
41333560 |
T |
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