View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4357-Insertion-2 (Length: 1017)
Name: NF4357-Insertion-2
Description: NF4357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4357-Insertion-2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 838; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 838; E-Value: 0
Query Start/End: Original strand, 5 - 1017
Target Start/End: Complemental strand, 1156796 - 1155782
Alignment:
| Q |
5 |
acacctctaaccgatttgattttgggaaagaaaccatctattgagcgatcaatgatgcaatcaatgatttcctcttgtgatgttgaaaacattttttgta |
104 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
1156796 |
acacctctaaccgatttgtttttgggaaagaaaccatctattgagcgattaatgatgcaatcaataatttcctcttgtgatgttgaaaacatattttgta |
1156697 |
T |
|
| Q |
105 |
gtgatgttcaaatcaccgtgaagtttgtggtacgaaaatcagatgacaatatattgtatgctctaggggggaatgattttgcaaacttaattataaattt |
204 |
Q |
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||||||||||||||||| | ||||| || ||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1156696 |
gtgatgttcaaatcaccatcaagttggtcgtaagaaaatcggatgacaatatattgtatgccctaggggggaatgattttgcaaacttaattataaattt |
1156597 |
T |
|
| Q |
205 |
tctaacctttccacttggcggagttttaggtagggtactagggaataattctttaggtagtattaatggattgcacaagagcttaactactttaaatgaa |
304 |
Q |
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|||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1156596 |
tctaacctttccacttggtggagttttaggtaggttacaagggaataattctttaggtagtattaatggattgcacaagagcttaactactttaaatgaa |
1156497 |
T |
|
| Q |
305 |
gacaagtatttgatttccaaagaagcaaaaaacaggcttctcgaactacgtatgttgcaatattattgttattatcagtgtgatccttctgatgacagaa |
404 |
Q |
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||||||||||| | ||||||||||||||| ||||||||||| ||||||||| | ||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
1156496 |
gacaagtattttacttccaaagaagcaaagaacaggcttcttgaactacgtcttttgcaatattattgtcatcatcagtgtgatccttctgatgacagaa |
1156397 |
T |
|
| Q |
405 |
ttattcatgttcaactttacaaaagtgatgaagattggagtggtgggggaactttttcaaaaatggaactagttacagatgacgattatgtcaaaagatc |
504 |
Q |
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| T |
1156396 |
ttattcatgttcaactttacaaaagtgatgaagattggagtggtggggtaactttttcaaaaatggaactagttacagatgaagattatgtcaaaagatc |
1156297 |
T |
|
| Q |
505 |
acaaatgtatttggttacggatgatctggtcatagaaccttggttgtctccaatttcatctttatatttgcataaccgtttcaaaactcctcttgatgac |
604 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1156296 |
acaaatgtatttggttacggatgatctggtcatagaaccttggttgtctccaatttcatctttatatttgcataaccgtttcaaaactcctcttgatgat |
1156197 |
T |
|
| Q |
605 |
ttggaggaaaaagttgtcactattggcaccgaagaggtaaaatataagagagttagaactatatagatttatcaccttctctgttttacctatgtactgt |
704 |
Q |
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| T |
1156196 |
ttggaggaaaaagttgtcactattggcaccgaagaggt-aaatataagagagttaaaactatatagatttatcaccttcactgttttacctatgtactgt |
1156098 |
T |
|
| Q |
705 |
ttaaagttttcacactagactgattatgcatcagttgctgatttcacactgttatgtttatgcagagttacagcatattgaaggcagctttaagctcaac |
804 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1156097 |
ttaaagttttcacactagactgattatgcatcagttgctgatttcacactgttatgtttgtgcagagttacagcatattgaaggcagctttaagctcaac |
1155998 |
T |
|
| Q |
805 |
atctgctctaacgaatggtctccgtcacttgctaacctaagtaattaggcatgaggaatgggaaccattaactttatgttgtttgtttaagagatgttaa |
904 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| | |
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| T |
1155997 |
atctgctctaacgaatggtctccgtcacttgctaacctaagtaattaagcatgaggaatgggaaccattaactttatgttgtttgtataagatatgtt-a |
1155899 |
T |
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| Q |
905 |
tagccttagaggaagcttgtaatgaaaaacatttctagactactattttgttattg-tatatca-ttttggcactaccgttt--agatcttaatttggag |
1000 |
Q |
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| T |
1155898 |
gagccttagaggaagcttgtaatgaaaaacatttctagattactattttgttattgttatatcatttttggcactaccgttttaagatcttaattttgag |
1155799 |
T |
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| Q |
1001 |
tttagaaacacatatat |
1017 |
Q |
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| T |
1155798 |
tttagaaacacatatat |
1155782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 5e-25; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 493 - 644
Target Start/End: Complemental strand, 23250582 - 23250431
Alignment:
| Q |
493 |
tgtcaaaagatcacaaatgtatttggttacggatgatctggtcatagaaccttggttgtctccaatttcatctttatatttgcataaccgtttcaaaact |
592 |
Q |
| |
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|||||| ||| || |||||||| ||||||||||||||||| || ||||||| | |||||||||| |||||||| || || | | | | ||||||||||| |
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| T |
23250582 |
tgtcaagagaccagaaatgtatgtggttacggatgatctgatcgtagaacccttgttgtctccagtttcatctatacatgtacttcaacgtttcaaaaca |
23250483 |
T |
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| Q |
593 |
cctcttgatgacttggaggaaaaagttgtcactattggcaccgaagaggtaa |
644 |
Q |
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| T |
23250482 |
cctattgatgatttggaggaaaaagttgtcaccatcggcatcaaagaggtaa |
23250431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 765 - 840
Target Start/End: Complemental strand, 23284329 - 23284254
Alignment:
| Q |
765 |
tgcagagttacagcatattgaaggcagctttaagctcaacatctgctctaacgaatggtctccgtcacttgctaac |
840 |
Q |
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|||||||| ||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
23284329 |
tgcagagtcacaacatattcaaggcagctttaagctcaacgcctgctctaacgaatggtctccgtcacttgttaac |
23284254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 507 - 644
Target Start/End: Complemental strand, 23284551 - 23284414
Alignment:
| Q |
507 |
aaatgtatttggttacggatgatctggtcatagaaccttggttgtctccaatttcatctttatatttgcataaccgtttcaaaactcctcttgatgactt |
606 |
Q |
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|||||||| ||||||||||||||||| | ||||||| | | |||||||| |||||||| ||||| | | | | |||||||||| ||| ||||| | || |
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| T |
23284551 |
aaatgtatgtggttacggatgatctgattgtagaaccgttgatgtctccagtttcatctatatatgtacttcaacgtttcaaaatacctattgataattt |
23284452 |
T |
|
| Q |
607 |
ggaggaaaaagttgtcactattggcaccgaagaggtaa |
644 |
Q |
| |
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| T |
23284451 |
ggaggaaaaagttgtcaccattggcatcaaagaggtaa |
23284414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 745 - 840
Target Start/End: Complemental strand, 23250179 - 23250084
Alignment:
| Q |
745 |
atttcacactgttatgtttatgcagagttacagcatattgaaggcagctttaagctcaacatctgctctaacgaatggtctccgtcacttgctaac |
840 |
Q |
| |
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|||||||| |||| |||| | |||||| || |||||| ||||| |||||| ||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
23250179 |
atttcacattgttgtgttggttcagagtcgcaacatatttaaggctgctttatgctcaacgtctgctctaacgaatggtctccgtcacttgttaac |
23250084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 494 - 644
Target Start/End: Complemental strand, 23283191 - 23283041
Alignment:
| Q |
494 |
gtcaaaagatcacaaatgtatttggttacggatgatctggtcatagaaccttggttgtctccaatttcatctttatatttgcataaccgtttcaaaactc |
593 |
Q |
| |
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||||| ||| || |||||||| | ||||||||||||||| || ||| ||| | |||||||| || ||||||| |||| | | | | ||||||||||| | |
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| T |
23283191 |
gtcaagagaccagaaatgtatgtagttacggatgatctgatcctagtaccattgttgtctcgaacttcatctatatacgtacttcaacgtttcaaaacac |
23283092 |
T |
|
| Q |
594 |
ctcttgatgacttggaggaaaaagttgtcactattggcaccgaagaggtaa |
644 |
Q |
| |
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|| || |||| |||||| |||||||| |||| ||||||| ||||||||||| |
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| T |
23283091 |
ctattaatgatttggagaaaaaagttctcaccattggcatcgaagaggtaa |
23283041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 373
Target Start/End: Complemental strand, 23250940 - 23250705
Alignment:
| Q |
138 |
gaaaatcagatgacaatatattgtatgctctaggggggaatgattttgcaaacttaattataaattttctaacctttccacttggcggagttttaggtag |
237 |
Q |
| |
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||||||| ||||||| |||||| ||||||| |||||| |||||||||| | || |||||| |||| |||| |||||| | || || |||||| | | |
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| T |
23250940 |
gaaaatctgatgacattatattatatgctcaagggggacgtgattttgcagagttgattatacgttttttaacatttccattgggtggtgttttacgcaa |
23250841 |
T |
|
| Q |
238 |
ggtactagggaataattctttaggtagtattaatggattgcacaagagcttaactactttaaatgaagacaagtatttgatttccaaagaagcaaaaaac |
337 |
Q |
| |
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|| |||||||| |||||| || |||||| |||||||| ||||||| || || |||||||||||| | |||||| || || || || ||||| ||| |
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| T |
23250840 |
cttagaagggaatagttctttgggaagtattgatggattgtgcaagagcatagctgatttaaatgaagaaatgtatttcatatctaaggatgcaaagaac |
23250741 |
T |
|
| Q |
338 |
aggcttctcgaactacgtatgttgcaatattattgt |
373 |
Q |
| |
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||||||||| | || || | ||||||||||||||| |
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| T |
23250740 |
aggcttctcaagataagtgttttgcaatattattgt |
23250705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 779 - 841
Target Start/End: Complemental strand, 23321571 - 23321509
Alignment:
| Q |
779 |
atattgaaggcagctttaagctcaacatctgctctaacgaatggtctccgtcacttgctaacc |
841 |
Q |
| |
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|||||||| || ||||||| |||||||||||||||||| ||||||||| |||||||| ||||| |
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| T |
23321571 |
atattgaaagctgctttaacctcaacatctgctctaacaaatggtctcagtcacttgttaacc |
23321509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 587 - 645
Target Start/End: Complemental strand, 22632764 - 22632706
Alignment:
| Q |
587 |
aaaactcctcttgatgacttggaggaaaaagttgtcactattggcaccgaagaggtaaa |
645 |
Q |
| |
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|||||||||||| |||| ||| |||||||||||||||| ||||||||| | |||||||| |
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| T |
22632764 |
aaaactcctcttaatgatttgaaggaaaaagttgtcaccattggcaccaaggaggtaaa |
22632706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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