View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4357-Insertion-3 (Length: 936)

Name: NF4357-Insertion-3
Description: NF4357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4357-Insertion-3
NF4357-Insertion-3
[»] chr7 (7 HSPs)
chr7 (238-935)||(6635350-6636053)
chr7 (12-106)||(6635111-6635206)
chr7 (589-721)||(38505412-38505543)
chr7 (585-704)||(33406728-33406845)
chr7 (634-719)||(34670112-34670197)
chr7 (589-666)||(36747168-36747245)
chr7 (648-728)||(38233806-38233886)
[»] chr2 (5 HSPs)
chr2 (585-719)||(16519169-16519301)
chr2 (591-721)||(16625859-16625988)
chr2 (589-720)||(4003300-4003430)
chr2 (585-666)||(18780250-18780330)
chr2 (586-719)||(32761355-32761486)
[»] chr6 (2 HSPs)
chr6 (587-707)||(26713733-26713852)
chr6 (585-635)||(31345183-31345233)
[»] chr4 (5 HSPs)
chr4 (586-721)||(46177005-46177139)
chr4 (591-721)||(35959072-35959199)
chr4 (619-718)||(45022800-45022898)
chr4 (589-721)||(52636633-52636764)
chr4 (589-689)||(7182301-7182400)
[»] chr8 (4 HSPs)
chr8 (622-721)||(39193836-39193934)
chr8 (586-666)||(3404706-3404785)
chr8 (589-689)||(34272386-34272486)
chr8 (588-721)||(79691-79824)
[»] chr3 (5 HSPs)
chr3 (589-721)||(29623108-29623240)
chr3 (586-689)||(47789556-47789658)
chr3 (586-721)||(3537077-3537211)
chr3 (585-632)||(17642809-17642856)
chr3 (602-689)||(49860721-49860807)
[»] chr1 (15 HSPs)
chr1 (589-721)||(36269615-36269746)
chr1 (586-666)||(26940475-26940554)
chr1 (583-667)||(28718923-28719007)
chr1 (634-721)||(33324550-33324637)
chr1 (589-721)||(36886742-36886872)
chr1 (585-689)||(40707308-40707411)
chr1 (585-684)||(17556536-17556634)
chr1 (587-666)||(52073580-52073659)
chr1 (619-689)||(23871573-23871642)
chr1 (619-689)||(33991443-33991512)
chr1 (586-721)||(42333514-42333648)
chr1 (586-632)||(45565349-45565395)
chr1 (589-719)||(50586920-50587048)
chr1 (585-666)||(12293678-12293758)
chr1 (587-652)||(39179253-39179317)
[»] chr5 (2 HSPs)
chr5 (587-689)||(35700930-35701031)
chr5 (619-704)||(4649083-4649166)


Alignment Details
Target: chr7 (Bit Score: 476; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 238 - 935
Target Start/End: Original strand, 6635350 - 6636053
Alignment:
Q  238 gtgaacagcagatgagacagaatagtgaaagagtgaagagagaaaaggttaattggacaatatgcaatgcaagtgcacgtgaagttttagacannnnnnn 337  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  6635350 gtgaacagcagatgagacagaatcgtgaaagagtgaagagagaaaaggttaattggacaatatgcaatgcaagtgcacgtgaagttttagacattttttt 6635449  T
Q  338 nagtcttttctatctttcatgaatgaatgtaacggctagaatgactacggtgtttgttcaactctaactcatttttaatcaaaattacttcttttaattt 437  Q
     ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6635450 -agtcttttctatctttcatgaatgaatgtaacggctagaatgactagagtgtttgttcaactctaactcatttttaatcaaaattacttcttttaattt 6635548  T
Q  438 ccttaatctactttgtgtatgttggta-----acactgtgatcttataaaagctagagtgtgtagtttttgtaaaatttctatagttagatttcaacaaa 532  Q
    |||||||||| ||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6635549 ccttaatcta-tttgtgtatgttggtattacaacactgtgatcttataaaagctagagtgtgtagtttttgtaaaatttctatagttagatttcaacaaa 6635647  T
Q  533 ttcaatgtaatgtaaaaacattcatgcactttgtgtcgtagcatcttgcctgactaaggctttgtttgcgagtttggatgagaaatgaggggagggtttt 632  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6635648 ttcaatgtaatgtaaaaacattcatgcactttttgtcgtagcatcttgcctgactaaggctttgtttgcgagtttggatgagaaatgaggggagggtttt 6635747  T
Q  633 agg-aaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagagggctttaaagggttaatttttctttataatacaaaaccgttctcaaaa 731  Q
    ||| ||||||||||| ||||||| ||||||||||||||||||||||| |||||||||  ||||||||||||||||| |||||||||||||||||||||||    
T  6635748 aggaaaaaaatgaaggagcaattggaagaaatagagtacaatgagaacagagggcttcgaagggttaatttttcttcataatacaaaaccgttctcaaaa 6635847  T
Q  732 cactctaattttaaggnnnnnnnnnnnnnnnnttgagatgaggggttttgaggaaaattgataaacactctaattttcctcaaaacactctttc-nnnnn 830  Q
    ||||||||||||||||                ||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||          
T  6635848 cactctaattttaagggaaaaaatgtaaaaaattgagataaggggttttgaggaaaattgataaacattttaattttcctcaaaacactctttcaaaaaa 6635947  T
Q  831 nnnnnnnnnntttctcaattttcttctatatttctcacctcaaaactcctcgctcccctcccctccaaactcagaaataaa-ccctaagagtaacaatga 929  Q
              ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6635948 atgtacaaaatttctcaattttcctctatatttctcacctcaaaactcctcgctcccctcccctccaaactcagaaataaacccctaagagtaacaatga 6636047  T
Q  930 agtttg 935  Q
    ||||||    
T  6636048 agtttg 6636053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 6635111 - 6635206
Alignment:
Q  12 atccatgaatgttccgtttatgaaagaaatgtgata-cgtgtgatttacaacacttacaactgtgtactagcgtggtatattttaggccctaaagt 106  Q
    |||||| ||||||  ||||| ||||||||  ||||| | |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  6635111 atccataaatgttgtgtttaagaaagaaacttgatagcatgtgatttacaaaacttacaactgtgtactagcgtggtatattttagtccctaaagt 6635206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 589 - 721
Target Start/End: Complemental strand, 38505543 - 38505412
Alignment:
Q  589 aggctttgtttgcgagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagagggctt 688  Q
    |||||||||||||||||||||| | |||  ||||||| || ||  |||||||| |||  ||||| | |||||||||||| | |||| || | ||||||||    
T  38505543 aggctttgtttgcgagtttggaggggaagggaggggaaggcttg-ggaaaaaaggaatgagcaagtggaagaaatagaggaaaatgggaggggagggctt 38505445  T
Q  689 taaagggttaatttttctttataatacaaaacc 721  Q
    |   ||||||| ||||||| |||||||||||||    
T  38505444 tggggggttaacttttcttcataatacaaaacc 38505412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 585 - 704
Target Start/End: Complemental strand, 33406845 - 33406728
Alignment:
Q  585 actaaggctttgtttgcgagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagagg 684  Q
    |||||||||||||||| ||||||||| | ||   |||||||||||||||  |||||| |||| ||||| | |||||||||||  ||| || || ||||||    
T  33406845 actaaggctttgtttgggagtttggaggggaggggaggggagggtttta-aaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagg 33406747  T
Q  685 gctttaaagggttaattttt 704  Q
    ||||| || |||||||||||    
T  33406746 gctttgaa-ggttaattttt 33406728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 634 - 719
Target Start/End: Original strand, 34670112 - 34670197
Alignment:
Q  634 ggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagagggctttaaagggttaatttttctttataatacaaaa 719  Q
    |||||||| |||  ||||| |||||||||||||| | ||||||| || | | |||| ||||||||| ||||||| |||||||||||    
T  34670112 ggaaaaaaggaacgagcaagtagaagaaatagaggaaaatgagaggaaacgactttgaagggttaacttttcttcataatacaaaa 34670197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 589 - 666
Target Start/End: Original strand, 36747168 - 36747245
Alignment:
Q  589 aggctttgtttgcgagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaattagaagaaataga 666  Q
    |||||||||||| ||||||||| | ||   |||||||||||||| | ||||||||||| ||||| | |||||||||||    
T  36747168 aggctttgtttgagagtttggaggggaggggaggggagggttttggaaaaaaatgaaggagcaagtggaagaaataga 36747245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 648 - 728
Target Start/End: Complemental strand, 38233886 - 38233806
Alignment:
Q  648 agcaattagaagaaatagagtacaatgagaagagagggctttaaagggttaatttttctttataatacaaaaccgttctca 728  Q
    ||||| ||||| |||||||||||| ||  | |||||||||||  | |||||||||||||| ||| ||||||||| ||||||    
T  38233886 agcaagtagaaaaaatagagtacattggaatgagagggctttggaaggttaatttttcttgatattacaaaacccttctca 38233806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 4e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 585 - 719
Target Start/End: Complemental strand, 16519301 - 16519169
Alignment:
Q  585 actaaggctttgtttgcgagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagagg 684  Q
    |||||||||||||||||||||||||| | |||  |||||||||||||| |||||||| |||| ||||| | |||||||||||||||| || || | ||||    
T  16519301 actaaggctttgtttgcgagtttggaggggaagagaggggagggtttt-ggaaaaaaggaaggagcaagtggaagaaatagagtacattg-gaggggagg 16519204  T
Q  685 gctttaaagggttaatttttctttataatacaaaa 719  Q
    |||||   ||||| ||||||||| |||||||||||    
T  16519203 gctttggtgggttgatttttcttcataatacaaaa 16519169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 591 - 721
Target Start/End: Complemental strand, 16625988 - 16625859
Alignment:
Q  591 gctttgtttgcgagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagagggcttta 690  Q
    |||||||||||||||||||| | |||  |||||||||||||| |||||||| || | ||||| | |||||||||||||||| || || | |||||||||     
T  16625988 gctttgtttgcgagtttggaggggaagggaggggagggtttt-ggaaaaaaggatggagcaagtggaagaaatagagtacattgggaggggagggctttg 16625890  T
Q  691 aagggttaatttttctttataatacaaaacc 721  Q
      ||||||||||||||| || ||||||||||    
T  16625889 gggggttaatttttcttcatgatacaaaacc 16625859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 589 - 720
Target Start/End: Original strand, 4003300 - 4003430
Alignment:
Q  589 aggctttgtttgcgagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagagggctt 688  Q
    |||||||||||| |||||||||   |||  |||||||||| ||| |||||||| |||  ||||| | |||||||||||| | |||| || | ||||||||    
T  4003300 aggctttgtttgtgagtttggagtggaagggaggggagggcttt-ggaaaaaaggaatgagcaagtggaagaaatagaggaaaatgggaggggagggctt 4003398  T
Q  689 taaagggttaatttttctttataatacaaaac 720  Q
    |   ||||||||||||||| ||||||||||||    
T  4003399 tggggggttaatttttcttcataatacaaaac 4003430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 585 - 666
Target Start/End: Original strand, 18780250 - 18780330
Alignment:
Q  585 actaaggctttgtttgcgagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaattagaagaaataga 666  Q
    |||||||||||||||| ||||||||| | ||   |||||||||||||| |||||||| |||| ||||  | |||||||||||    
T  18780250 actaaggctttgtttgggagtttggaggggaggggaggggagggtttt-ggaaaaaaggaaggagcacgtggaagaaataga 18780330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 586 - 719
Target Start/End: Complemental strand, 32761486 - 32761355
Alignment:
Q  586 ctaaggctttgtttgcgagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagaggg 685  Q
    ||||||||||| ||||||||||||| | |||  |||||||||| ||| | ||||||||||| | ||| | ||| |||||||| ||| || |   ||||||    
T  32761486 ctaaggctttgattgcgagtttggaggggaagggaggggagggcttt-gtaaaaaatgaaggatcaagtggaataaatagaggacattgggggcagaggg 32761388  T
Q  686 ctttaaagggttaatttttctttataatacaaaa 719  Q
    ||||   ||||| ||||||||| |||||||||||    
T  32761387 cttt-gtgggttcatttttcttcataatacaaaa 32761355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 6e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 587 - 707
Target Start/End: Original strand, 26713733 - 26713852
Alignment:
Q  587 taaggctttgtttgcgagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagagggc 686  Q
    |||||||||||||||||||||||| | |||  |||||||||||||| |||| ||| |||| ||||| | |||||||||||||||| || || | ||||||    
T  26713733 taaggctttgtttgcgagtttggaggggaagggaggggagggtttt-ggaataaaggaaggagcaagtggaagaaatagagtacattgggaggggagggc 26713831  T
Q  687 tttaaagggttaatttttctt 707  Q
    ||| | |||||||||||||||    
T  26713832 tttgaggggttaatttttctt 26713852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 585 - 635
Target Start/End: Original strand, 31345183 - 31345233
Alignment:
Q  585 actaaggctttgtttgcgagtttggatgagaaatgaggggagggttttagg 635  Q
    |||||||||||||||| ||||||||| | |||  |||||||||||||||||    
T  31345183 actaaggctttgtttgggagtttggaagggaacggaggggagggttttagg 31345233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 6e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 586 - 721
Target Start/End: Complemental strand, 46177139 - 46177005
Alignment:
Q  586 ctaaggctttgtttgcgagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagaggg 685  Q
    ||||||||||||||| ||||||||| |  ||  |||||||||||||| |||||||| |||| | ||| | |||||||||||||||| || || | |||||    
T  46177139 ctaaggctttgtttgtgagtttggagggaaagggaggggagggtttt-ggaaaaaaagaaggaacaagtggaagaaatagagtacattgggaggggaggg 46177041  T
Q  686 ctttaaagggttaatttttctttataatacaaaacc 721  Q
     |||   ||||||||||||||| |||||||||||||    
T  46177040 ttttggggggttaatttttcttaataatacaaaacc 46177005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 591 - 721
Target Start/End: Original strand, 35959072 - 35959199
Alignment:
Q  591 gctttgtttgcgagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagagggcttta 690  Q
    |||||||||||||||||||| | |||  ||||||||| |||   | ||| | |||| ||||| | |||||||||||||||| || || | |||||||||     
T  35959072 gctttgtttgcgagtttggaggggaagggaggggaggtttt---ggaaagaggaaggagcaagtggaagaaatagagtacattgtgaggggagggctttg 35959168  T
Q  691 aagggttaatttttctttataatacaaaacc 721  Q
      || |||||||||||| |||||||||||||    
T  35959169 ggggtttaatttttcttcataatacaaaacc 35959199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 619 - 718
Target Start/End: Complemental strand, 45022898 - 45022800
Alignment:
Q  619 gaggggagggttttaggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagagggctttaaagggttaatttttctttataatacaaa 718  Q
    |||||||||||||| |||||||| |||| ||||| | ||| |||||| | ||  ||||| | ||||||||||  ||||| ||||||||||||||||||||    
T  45022898 gaggggagggtttt-ggaaaaaaagaaggagcaagtggaaaaaataggggactttgagaggggagggctttagtgggttcatttttctttataatacaaa 45022800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 589 - 721
Target Start/End: Original strand, 52636633 - 52636764
Alignment:
Q  589 aggctttgtttgcgagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaaga-gagggct 687  Q
    |||||||||||||||||||||| | |||  || |||||  |||| |||||||| ||   ||||| | |||||||||||||||| || ||||| |||||||    
T  52636633 aggctttgtttgcgagtttggaggggaagggatgggagaatttt-ggaaaaaaggactgagcaagtggaagaaatagagtacattg-gaagatgagggct 52636730  T
Q  688 ttaaagggttaatttttctttataatacaaaacc 721  Q
    ||   ||||||||||||||| |||||| ||||||    
T  52636731 ttggggggttaatttttcttcataatataaaacc 52636764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 589 - 689
Target Start/End: Complemental strand, 7182400 - 7182301
Alignment:
Q  589 aggctttgtttgcgagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagagggctt 688  Q
    |||||||||||| ||||||||| | ||   |||||||||||||| |||||||| |||| ||||| | |||||||||||  ||| ||||| ||||| ||||    
T  7182400 aggctttgtttgggagtttggaggggaggggaggggagggtttt-ggaaaaaaggaaggagcaagtggaagaaatagaagacattgagaggagagagctt 7182302  T

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Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 622 - 721
Target Start/End: Original strand, 39193836 - 39193934
Alignment:
Q  622 gggagggttttaggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagagggctttaaagggttaatttttctttataatacaaaacc 721  Q
    ||||||||||| |||||||| |||||||||| | |||||||||||||||| || || | |||||||||   ||||||||||||||| |||||| ||||||    
T  39193836 gggagggtttt-ggaaaaaaggaagtagcaagtggaagaaatagagtacattgggaggggagggctttggggggttaatttttcttcataatataaaacc 39193934  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 586 - 666
Target Start/End: Complemental strand, 3404785 - 3404706
Alignment:
Q  586 ctaaggctttgtttgcgagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaattagaagaaataga 666  Q
    ||||||||||||||| ||||||||| | ||   |||||||||||||| |||||||| |||| ||||| | |||||||||||    
T  3404785 ctaaggctttgtttgggagtttggaggggaggggaggggagggtttt-ggaaaaaaggaaggagcaagtggaagaaataga 3404706  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 589 - 689
Target Start/End: Original strand, 34272386 - 34272486
Alignment:
Q  589 aggctttgtttgcgagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagagggctt 688  Q
    |||||||||||| ||||||| | | |||  ||||||||| |||| | |||||| |||| ||||| | |||||||||||  ||| ||||| ||||||||||    
T  34272386 aggctttgtttgggagtttgaaggggaagggaggggaggattttggaaaaaaaggaaggagcaagtggaagaaatagaagacattgagaggagagggctt 34272485  T
Q  689 t 689  Q
    |    
T  34272486 t 34272486  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 588 - 721
Target Start/End: Complemental strand, 79824 - 79691
Alignment:
Q  588 aaggctttgtttgcgagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagagggct 687  Q
    ||||||||||||||||||||||| | |||  ||||||| || ||  | |||||| |||  ||||| | |||||||||||| | |||| || | |||||||    
T  79824 aaggctttgtttgcgagtttggaggggaagggaggggaaggcttgggaaaaaaaggaacgagcaagtggaagaaatagaggaaaatgggaggggagggct 79725  T
Q  688 ttaaagggttaatttttctttataatacaaaacc 721  Q
    ||   ||||||  ||||||| ||||||| |||||    
T  79724 ttggggggttacgttttcttcataatactaaacc 79691  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 589 - 721
Target Start/End: Original strand, 29623108 - 29623240
Alignment:
Q  589 aggctttgtttgcgagtttggatgagaaatgaggggagggtttt-aggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagagggct 687  Q
    ||||||||||||||||||| || | |||  |||||||||||||| || |||||| |||| ||||| | |||||||||||| ||| |  || | |||||||    
T  29623108 aggctttgtttgcgagtttagaggggaagagaggggagggttttgagaaaaaaaggaaggagcaagtggaagaaatagaggacattaggaggggagggct 29623207  T
Q  688 ttaaagggttaatttttctttataatacaaaacc 721  Q
    ||  | |||||||||||||| |||||||||||||    
T  29623208 tt-gatggttaatttttcttcataatacaaaacc 29623240  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 586 - 689
Target Start/End: Complemental strand, 47789658 - 47789556
Alignment:
Q  586 ctaaggctttgtttgcgagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagaggg 685  Q
    ||||||||||||||| ||||||||| | |||  |||||||||||| || ||||||| |||| ||||| | |||||||||||  ||| ||||| ||||| |    
T  47789658 ctaaggctttgtttgggagtttggaggggaagggaggggagggttgta-gaaaaaaggaaggagcaagtggaagaaatagaagacattgagaggagagag 47789560  T
Q  686 cttt 689  Q
    ||||    
T  47789559 cttt 47789556  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 586 - 721
Target Start/End: Original strand, 3537077 - 3537211
Alignment:
Q  586 ctaaggctttgtttgcgagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagaggg 685  Q
    ||||| ||||||||||||||||||| | |||  ||||||| || |||| ||||||| |||  || || | |||||||||||| | |||| || | |||||    
T  3537077 ctaagactttgtttgcgagtttggaggggaagggaggggaaggcttta-gaaaaaaggaatgagtaagtggaagaaatagaggaaaatgggaggggaggg 3537175  T
Q  686 ctttaaagggttaatttttctttataatacaaaacc 721  Q
    ||||    |||||| ||||||| |||||||||||||    
T  3537176 ctttgggaggttaacttttcttcataatacaaaacc 3537211  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 585 - 632
Target Start/End: Complemental strand, 17642856 - 17642809
Alignment:
Q  585 actaaggctttgtttgcgagtttggatgagaaatgaggggagggtttt 632  Q
    |||||||||||||||| |||||||||||||||  |||||||| |||||    
T  17642856 actaaggctttgtttgagagtttggatgagaatggaggggagcgtttt 17642809  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 689
Target Start/End: Original strand, 49860721 - 49860807
Alignment:
Q  602 gagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagagggcttt 689  Q
    ||||||||| | || ||||||| |||||||| |||||||| |||| ||||||| |||||||||||  ||| || || |||||||||||    
T  49860721 gagtttggaggggagatgagggaagggtttt-ggaaaaaaggaaggagcaattggaagaaatagaagacattgggaggagagggcttt 49860807  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 589 - 721
Target Start/End: Original strand, 36269615 - 36269746
Alignment:
Q  589 aggctttgtttgcgagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagagggctt 688  Q
    |||||||||||||||||||||| | ||| |||||||| || ||  |||||||| |||  ||||| | |||||||||||| | |||| || | ||||||||    
T  36269615 aggctttgtttgcgagtttggaggggaagtgaggggaaggcttg-ggaaaaaaggaatgagcaagtggaagaaatagagaaaaatgggaggggagggctt 36269713  T
Q  689 taaagggttaatttttctttataatacaaaacc 721  Q
    |   ||||||| ||||||| |||||||||||||    
T  36269714 tggggggttaacttttcttcataatacaaaacc 36269746  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 586 - 666
Target Start/End: Original strand, 26940475 - 26940554
Alignment:
Q  586 ctaaggctttgtttgcgagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaattagaagaaataga 666  Q
    ||||||||||||||| ||||||||| | || | |||||||||||||| |||||||| |||| ||||| | |||||||||||    
T  26940475 ctaaggctttgtttgagagtttggaggggagaggaggggagggtttt-ggaaaaaaggaaggagcaagtggaagaaataga 26940554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 667
Target Start/End: Complemental strand, 28719007 - 28718923
Alignment:
Q  583 tgactaaggctttgtttgcgagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaattagaagaaatagag 667  Q
    ||||| || ||||||||||||||||||| | |||| ||| |||||||||| | |||||| |||| ||||| | ||||||||||||    
T  28719007 tgacttagactttgtttgcgagtttggaggggaaaggagtggagggttttggaaaaaaaggaagaagcaagtggaagaaatagag 28718923  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 634 - 721
Target Start/End: Original strand, 33324550 - 33324637
Alignment:
Q  634 ggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagagggctttaaagggttaatttttctttataatacaaaacc 721  Q
    |||||||| |||  ||||| |||||||||||||| | |||| ||||||||||||||   ||||||| ||||||| ||||||| |||||    
T  33324550 ggaaaaaaggaatgagcaagtagaagaaatagaggaaaatgggaagagagggctttggggggttaacttttcttcataatactaaacc 33324637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 589 - 721
Target Start/End: Original strand, 36886742 - 36886872
Alignment:
Q  589 aggctttgtttgcgagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagagggctt 688  Q
    |||||||||||||||||||||| | |||  ||||||| ||  || |||||||| |||  ||||| | |||||||||||| | ||||||| | ||||||||    
T  36886742 aggctttgtttgcgagtttggaggggaagggaggggaagg-cttgggaaaaaaggaatgagcaagtggaagaaatagaggaaaatgagaggggagggctt 36886840  T
Q  689 taaagggttaatttttctttataatacaaaacc 721  Q
    |   ||||||| ||||||| ||||||| |||||    
T  36886841 t-gggggttaacttttcttcataatactaaacc 36886872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 585 - 689
Target Start/End: Complemental strand, 40707411 - 40707308
Alignment:
Q  585 actaaggctttgtttgcgagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagagg 684  Q
    |||||||||||||||| ||||||||| | |||  ||||| || ||||| |||||||| |||| ||||| | |||||||||||  ||| || || ||||||    
T  40707411 actaaggctttgtttgggagtttggaggggaagagagggaagagtttt-ggaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagg 40707313  T
Q  685 gcttt 689  Q
    |||||    
T  40707312 gcttt 40707308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 585 - 684
Target Start/End: Original strand, 17556536 - 17556634
Alignment:
Q  585 actaaggctttgtttgcgagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagagg 684  Q
    |||||||||||||||||||||||||| | |||  |||||||||| || || |||||| |||| || || | |||||||||||| ||| || || ||||||    
T  17556536 actaaggctttgtttgcgagtttggaggggaagggaggggaggg-ttcagaaaaaaaggaaggagtaagtggaagaaatagaggacattgggaggagagg 17556634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 587 - 666
Target Start/End: Complemental strand, 52073659 - 52073580
Alignment:
Q  587 taaggctttgtttgcgagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaattagaagaaataga 666  Q
    |||||||||||||||||||||||| | |||  |||||||||| |||   |||||| |||| ||||| | |||||||||||    
T  52073659 taaggctttgtttgcgagtttggaggggaagggaggggaggggtttgcaaaaaaaggaaggagcaagtggaagaaataga 52073580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 619 - 689
Target Start/End: Complemental strand, 23871642 - 23871573
Alignment:
Q  619 gaggggagggttttaggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagagggcttt 689  Q
    |||||||||||||| |||||||| |||| ||||| | |||||||||||  ||| ||||| |||||||||||    
T  23871642 gaggggagggtttt-ggaaaaaaggaaggagcaagtggaagaaatagaagacattgagaggagagggcttt 23871573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 619 - 689
Target Start/End: Original strand, 33991443 - 33991512
Alignment:
Q  619 gaggggagggttttaggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagagggcttt 689  Q
    |||||||||||||| ||||||||||||| ||||| | |||||||||||  ||| || || |||||||||||    
T  33991443 gaggggagggtttt-ggaaaaaatgaaggagcaagtggaagaaatagaagacattgggaggagagggcttt 33991512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 586 - 721
Target Start/End: Original strand, 42333514 - 42333648
Alignment:
Q  586 ctaaggctttgtttgcgagtttggatgagaaatgaggggagggttttag-gaaaaa-atgaagtagcaattagaagaaatagagtacaatgagaagagag 683  Q
    |||||||||||||||| ||||||||  |||| |||||||  | |||||| |||||| | |||  | ||| | ||||||||| |||||| ||| |||||||    
T  42333514 ctaaggctttgtttgcaagtttggagaagaagtgagggg--gtttttagagaaaaagaagaaagaacaagtggaagaaataaagtacattgaaaagagag 42333611  T
Q  684 ggctttaaagggttaatttttctttataatacaaaacc 721  Q
    || ||||  | ||||||||||||| |||||||||||||    
T  42333612 gggtttag-gcgttaatttttcttcataatacaaaacc 42333648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 586 - 632
Target Start/End: Complemental strand, 45565395 - 45565349
Alignment:
Q  586 ctaaggctttgtttgcgagtttggatgagaaatgaggggagggtttt 632  Q
    ||||||||||||||||||||||||| | |||  ||||||||||||||    
T  45565395 ctaaggctttgtttgcgagtttggaggggaagggaggggagggtttt 45565349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 589 - 719
Target Start/End: Original strand, 50586920 - 50587048
Alignment:
Q  589 aggctttgtttgcgagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagagggctt 688  Q
    |||| |||||||| |||||||| | |||  ||| |||| | ||| |||||||| |||| ||||| | |||||||||||| ||| |||| || ||||||||    
T  50586920 aggccttgtttgcaagtttggaggggaagggagaggagagcttt-ggaaaaaaggaaggagcaagtggaagaaatagaggacattgag-agggagggctt 50587017  T
Q  689 taaagggttaatttttctttataatacaaaa 719  Q
    |   ||||| ||||||||| |||||||||||    
T  50587018 tggggggttcatttttcttcataatacaaaa 50587048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 585 - 666
Target Start/End: Original strand, 12293678 - 12293758
Alignment:
Q  585 actaaggctttgtttgcgagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaattagaagaaataga 666  Q
    |||||||||||||||| ||||||||| | ||   |||||||||||||| |||||||| |||| | ||| | |||||||||||    
T  12293678 actaaggctttgtttgggagtttggaggggaggagaggggagggtttt-ggaaaaaaggaaggatcaagtggaagaaataga 12293758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 587 - 652
Target Start/End: Complemental strand, 39179317 - 39179253
Alignment:
Q  587 taaggctttgtttgcgagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaa 652  Q
    |||||||||||||| ||||||||| | |||  |||||||||||||| |||||||| |||| |||||    
T  39179317 taaggctttgtttgggagtttggaggggaagggaggggagggtttt-ggaaaaaaggaaggagcaa 39179253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 587 - 689
Target Start/End: Original strand, 35700930 - 35701031
Alignment:
Q  587 taaggctttgtttgcgagtttggatgagaaatgaggggagggttttaggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagagggc 686  Q
    |||||||||||||| ||||||||| | ||   |||||||||||||| |||||||| |||| ||||| |  ||||||||||  ||| || || ||||||||    
T  35700930 taaggctttgtttgggagtttggaggggaggggaggggagggtttt-ggaaaaaaggaaggagcaagtgaaagaaatagaagacattgggaggagagggc 35701028  T
Q  687 ttt 689  Q
    |||    
T  35701029 ttt 35701031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 704
Target Start/End: Complemental strand, 4649166 - 4649083
Alignment:
Q  619 gaggggagggttttaggaaaaaatgaagtagcaattagaagaaatagagtacaatgagaagagagggctttaaagggttaattttt 704  Q
    |||||||||||||| |||||||| |||  ||||| | |||||||||||  ||| ||||| ||||||||||| || |||||||||||    
T  4649166 gaggggagggtttt-ggaaaaaaagaatgagcaagtggaagaaatagaagacattgagaggagagggctttgaa-ggttaattttt 4649083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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