View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4357-Insertion-4 (Length: 919)
Name: NF4357-Insertion-4
Description: NF4357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4357-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 70 - 522
Target Start/End: Original strand, 4114435 - 4114901
Alignment:
| Q |
70 |
tttaacaacataggagaagcaatatcattggttacacaatcataatcatat-------------tgaaaattttaatcacacattagcattagttaattt |
156 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4114435 |
tttaacaacataggagaagcaatatcattggttacacaatcataatcatatagaaaacaaatattgaaaattttaatcacacattagcattagttaattt |
4114534 |
T |
|
| Q |
157 |
tgatctcattatttatgcttgcctatttccataaatatgataaactatgtgatttatatgtagatcatagtttaactgtgttgtaacgtgtaatctcgta |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4114535 |
tgatctcattatttatgcttgcctatttccataaatatgataaactatgtgatttatatgtagatcaaagtttaactgtgttgtaacgtgtaatctcgta |
4114634 |
T |
|
| Q |
257 |
cttacacatatgttttattatttctct--gttctctttttacctaatcttcttgctaagcaaactccaagcacaagccttgtccatgtagaaacattagt |
354 |
Q |
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| T |
4114635 |
cttacacatatgttttattatttctctatgttctctttttacctaatct-cttgctaagcaaactccaagcacatgccttgtccatgtagaaacattagt |
4114733 |
T |
|
| Q |
355 |
attacttattttaatgtccttattcaatttggccgaaagcatagtatcgaatatgaagattatttattggttttttcacggcgcatgtatatttatacgt |
454 |
Q |
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|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4114734 |
atcagttattttaatgtccttattcaatttggccgaaagcatagtatcgaatatgaagattatttattggttttttcacagcgcatgtatatttatacgt |
4114833 |
T |
|
| Q |
455 |
cgatgattgaatgtgaatcatttatagagattaacaaagcttatttatatgcctgtaatcagcatcac |
522 |
Q |
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| T |
4114834 |
cgatgattcaatgtgaatcatttatagagattaacaaagcttatttatatgcctgtaatcagcatcac |
4114901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 542 - 919
Target Start/End: Original strand, 4114925 - 4115290
Alignment:
| Q |
542 |
ggataaggaactacactacaaacaaacaatacttaagcaatttgttggaattttggctattattgaaatcaaacattgaccaaaattaaactatgacaac |
641 |
Q |
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| T |
4114925 |
ggataaggaactacactacaaacaaacaatacttaagcaatttgttggaattttggctattattgaaatcatacattgaccaaaattaaactatgacaac |
4115024 |
T |
|
| Q |
642 |
tgaagtgaatataacgtatagagagcacacgtctaatgatgctttacacattttggataaaattgcaaagatcgagcaaaattttagcaggaatccttgc |
741 |
Q |
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| T |
4115025 |
tgaagtgaatataacgtatagagagcacacgtctaatgatgctttagacattttggataaaattgcaataatcgagcaaaattttagcaggaatccttgc |
4115124 |
T |
|
| Q |
742 |
aatcaggcaacttgagactcataaaaaatcggatatgaccaaattttaagtttaagattagatttaagattcaacatagttgatggtgtgtcgttgccgt |
841 |
Q |
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| T |
4115125 |
aatcaggcaacttgagactcataaaaaatcggatatgaccaaattttaag------------tttaagattgaacatagttggtggtgtgtcattgccgt |
4115212 |
T |
|
| Q |
842 |
tgacctgtcaagtgtgagtaaatgactttcatgttagatataaatgaacatgaacatcatataagtaaggtgactaca |
919 |
Q |
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||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4115213 |
tgatgtgtcaagtgtgagtaaataactttcatgttagatataaacgaacatgaacatcatataagtaaggtgactaca |
4115290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 4114386 - 4114435
Alignment:
| Q |
8 |
accatgcccttc-aaaaggacctcaaatgcccacattggaatgtttgcat |
56 |
Q |
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| T |
4114386 |
accatgccctttgaaaaggacctccaatgcccacattggaatgtttgcat |
4114435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 48296510 - 48296561
Alignment:
| Q |
75 |
caacataggagaagcaatatcattggttacacaatcataatcatattgaaaa |
126 |
Q |
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|||||||| ||||| |||||||||||||||||||||||| ||||| |||||| |
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| T |
48296510 |
caacatagaagaaggaatatcattggttacacaatcatagtcataatgaaaa |
48296561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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