View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4357-Insertion-6 (Length: 731)

Name: NF4357-Insertion-6
Description: NF4357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4357-Insertion-6
NF4357-Insertion-6
[»] chr6 (17 HSPs)
chr6 (8-730)||(24225955-24226677)
chr6 (518-640)||(6793486-6793606)
chr6 (534-610)||(512765-512841)
chr6 (564-631)||(28067313-28067380)
chr6 (533-589)||(457692-457748)
chr6 (535-589)||(26847183-26847237)
chr6 (541-613)||(32267018-32267090)
chr6 (278-335)||(24214060-24214117)
chr6 (543-619)||(3037376-3037452)
chr6 (540-595)||(28729978-28730033)
chr6 (535-589)||(8585745-8585799)
chr6 (514-607)||(31175973-31176064)
chr6 (567-640)||(10349144-10349216)
chr6 (542-603)||(28963591-28963652)
chr6 (570-631)||(33906583-33906644)
chr6 (558-590)||(9976973-9977005)
chr6 (544-641)||(6139309-6139406)
[»] chr8 (23 HSPs)
chr8 (491-619)||(44132825-44132951)
chr8 (491-590)||(15135968-15136064)
chr8 (492-604)||(1898050-1898160)
chr8 (540-619)||(35910593-35910670)
chr8 (534-640)||(226339-226443)
chr8 (534-640)||(702752-702856)
chr8 (534-640)||(739962-740066)
chr8 (534-640)||(863857-863961)
chr8 (492-640)||(6473922-6474064)
chr8 (542-617)||(20896188-20896263)
chr8 (560-647)||(41951169-41951256)
chr8 (534-639)||(33681267-33681370)
chr8 (540-589)||(10968541-10968590)
chr8 (559-632)||(12964330-12964403)
chr8 (540-593)||(20224903-20224956)
chr8 (542-589)||(4834971-4835018)
chr8 (543-625)||(41649970-41650052)
chr8 (567-616)||(42127209-42127258)
chr8 (535-609)||(26295413-26295487)
chr8 (535-609)||(26308670-26308744)
chr8 (542-592)||(44148212-44148262)
chr8 (558-619)||(15682638-15682699)
chr8 (566-611)||(25391137-25391182)
[»] chr4 (18 HSPs)
chr4 (491-619)||(50041766-50041892)
chr4 (491-619)||(50048988-50049114)
chr4 (534-637)||(36498592-36498695)
chr4 (534-613)||(52198367-52198446)
chr4 (542-603)||(29544163-29544224)
chr4 (535-643)||(44015406-44015514)
chr4 (540-589)||(19473050-19473099)
chr4 (566-619)||(33913962-33914015)
chr4 (542-608)||(5052112-5052178)
chr4 (542-603)||(23332134-23332195)
chr4 (542-603)||(46079341-46079402)
chr4 (542-603)||(52673199-52673260)
chr4 (552-619)||(30643603-30643670)
chr4 (558-589)||(27841089-27841120)
chr4 (542-589)||(29693237-29693284)
chr4 (543-589)||(29724351-29724397)
chr4 (539-589)||(53176882-53176932)
chr4 (548-619)||(32355002-32355070)
[»] chr2 (15 HSPs)
chr2 (517-647)||(28640118-28640246)
chr2 (491-646)||(21835972-21836123)
chr2 (556-631)||(1208617-1208692)
chr2 (542-603)||(23395962-23396023)
chr2 (542-619)||(32832594-32832671)
chr2 (534-630)||(13772777-13772873)
chr2 (542-589)||(6752075-6752122)
chr2 (581-646)||(14818694-14818759)
chr2 (542-603)||(39729015-39729076)
chr2 (542-603)||(41069674-41069735)
chr2 (541-589)||(40204727-40204775)
chr2 (540-623)||(13477688-13477771)
chr2 (566-608)||(8209317-8209359)
chr2 (534-589)||(38529873-38529928)
chr2 (542-632)||(11226146-11226236)
[»] chr5 (17 HSPs)
chr5 (492-637)||(3622155-3622298)
chr5 (545-615)||(9956624-9956694)
chr5 (541-603)||(19824613-19824675)
chr5 (535-608)||(33953152-33953225)
chr5 (542-589)||(34928837-34928884)
chr5 (541-589)||(14281809-14281858)
chr5 (548-632)||(17250474-17250558)
chr5 (541-589)||(22029850-22029898)
chr5 (539-619)||(28975577-28975656)
chr5 (560-624)||(32821924-32821988)
chr5 (552-589)||(18623597-18623634)
chr5 (542-595)||(22658864-22658917)
chr5 (535-584)||(33922856-33922905)
chr5 (563-612)||(37484836-37484885)
chr5 (534-637)||(3622320-3622423)
chr5 (542-589)||(14151943-14151990)
chr5 (534-631)||(8230771-8230867)
[»] chr1 (26 HSPs)
chr1 (534-632)||(19431383-19431481)
chr1 (542-619)||(3950296-3950373)
chr1 (534-639)||(46325584-46325688)
chr1 (534-617)||(33939589-33939672)
chr1 (534-632)||(11872181-11872279)
chr1 (535-619)||(44448492-44448576)
chr1 (548-639)||(46325408-46325497)
chr1 (534-632)||(17368389-17368487)
chr1 (534-642)||(26056777-26056888)
chr1 (542-603)||(48914986-48915047)
chr1 (542-603)||(48915377-48915438)
chr1 (548-637)||(49315741-49315830)
chr1 (560-640)||(7537002-7537082)
chr1 (542-617)||(24671171-24671246)
chr1 (543-589)||(49177438-49177483)
chr1 (540-640)||(4213839-4213939)
chr1 (569-632)||(37719044-37719107)
chr1 (567-637)||(31108760-31108830)
chr1 (542-603)||(48915178-48915237)
chr1 (578-631)||(4347451-4347504)
chr1 (560-601)||(6286457-6286498)
chr1 (553-589)||(15106251-15106287)
chr1 (522-589)||(34430054-34430119)
chr1 (542-603)||(19456311-19456372)
chr1 (542-595)||(26478599-26478652)
chr1 (540-585)||(50175961-50176006)
[»] chr3 (11 HSPs)
chr3 (534-615)||(34305804-34305885)
chr3 (542-632)||(10688608-10688698)
chr3 (567-640)||(52404685-52404758)
chr3 (565-611)||(20345072-20345118)
chr3 (539-624)||(16278780-16278865)
chr3 (561-636)||(19138401-19138476)
chr3 (542-589)||(39485471-39485518)
chr3 (558-604)||(43170419-43170465)
chr3 (548-632)||(7654554-7654639)
chr3 (558-619)||(42681853-42681914)
chr3 (542-603)||(46348393-46348454)
[»] chr7 (19 HSPs)
chr7 (541-646)||(27311776-27311879)
chr7 (567-642)||(42691095-42691170)
chr7 (535-589)||(32204785-32204839)
chr7 (541-640)||(42971643-42971742)
chr7 (534-612)||(22715809-22715887)
chr7 (542-600)||(32279295-32279353)
chr7 (541-587)||(33957481-33957527)
chr7 (566-640)||(38701532-38701606)
chr7 (558-595)||(43279245-43279282)
chr7 (540-593)||(44309415-44309468)
chr7 (542-589)||(11369056-11369103)
chr7 (540-590)||(23021210-23021258)
chr7 (542-589)||(37685191-37685238)
chr7 (534-576)||(8685962-8686004)
chr7 (553-639)||(30061154-30061240)
chr7 (542-608)||(40591039-40591105)
chr7 (542-603)||(2628437-2628498)
chr7 (563-608)||(19699882-19699927)
chr7 (552-589)||(43368497-43368534)
[»] scaffold0085 (1 HSPs)
scaffold0085 (534-612)||(31591-31669)
[»] scaffold0008 (1 HSPs)
scaffold0008 (558-646)||(263758-263846)
[»] scaffold0252 (1 HSPs)
scaffold0252 (558-591)||(8121-8154)


Alignment Details
Target: chr6 (Bit Score: 614; Significance: 0; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 8 - 730
Target Start/End: Complemental strand, 24226677 - 24225955
Alignment:
Q  8 tggtgttcattaaatagtagcaaaattgtgcatttttggaagaattgatgtgtggttttgttggtttaattgtgcattacagatgtgggaagctttgacc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24226677 tggtgttcattaaatagtagcaaaattgtgcatttttggaagaattgatgtgtggttttgttggtttaattgtgcattacagatgtgggaagctttgacc 24226578  T
Q  108 aaattttt-aagctaagcacatcaactttgagacactaaaaataacatcatcatcgtatgatgctattgcataaggagcttacaagttaagagcttcatt 206  Q
    |||||||| ||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24226577 aaattttttaagctaagcacatcaactttgagacactaa------catcatcatcgtatgatgctattgcataaggaacttacaagttaagagcttcatt 24226484  T
Q  207 atctaatgtagaacaatttccacattcacgagcacttttcactctagaaatgagattacaagttaagaattttaaggattttcaaaccatcattatattg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24226483 atctaatgtagaacaatttccacattcacgagcacttttcactctagaaatgagattacaagttaagaattttaaggattttcaaaccatcattatattg 24226384  T
Q  307 ggatggaaaacgatgttcaggggcaagacggaaaccaaccaatacaataattacgggaaatgaacgagaaaatgagtgataaatatcatcttattaggta 406  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24226383 ggatggaaaacgatgttcaggggcaagacggagaccaaccaatacaataattacgggaaatgaacgagaaaatgagtgacaaatatcatcttattaggta 24226284  T
Q  407 gaagataaactcatgaatgcaaagctaccaccattaaaaaatacaaagatggggagagatgtgttggcgatagagtctaaaggagaaatacttgagtgat 506  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  24226283 gaagataaactcatgaatgcaaagctaccaccatgaaaaaatacaaagatggggagagatgtgttggcgatagagtctaaaggagaaatacttgagtgac 24226184  T
Q  507 tttgtattttggtgacttttgtgacaatttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattat 606  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  24226183 tttgtattttggtgacttttgtgacaatttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttgatgacagagaattat 24226084  T
Q  607 tggttaggagagaaataaagacaaagccaccaaaatcacc-----gttacccggtctaaagaggggataaagacgcaagaccagagattgtgtgtggggg 701  Q
    |||||||||||||||||||||||||||||||||| |||||     |||||||  ||||||||||||||||| | || |||||||||||||| ||||||||    
T  24226083 tggttaggagagaaataaagacaaagccaccaaagtcaccgaagtgttacccaatctaaagaggggataaataggcgagaccagagattgtctgtggggg 24225984  T
Q  702 ttcacaatgacatcatgagaagctactcc 730  Q
    | |||||||||||||||||||| ||||||    
T  24225983 tccacaatgacatcatgagaagatactcc 24225955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 518 - 640
Target Start/End: Complemental strand, 6793606 - 6793486
Alignment:
Q  518 gtgacttttgtgacaatttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggaga 617  Q
    |||||||| |||||  ||||| ||||||||||||||||| || ||||||||| |||||||||||||||||||| |||| ||| ||||||||||||||| |    
T  6793606 gtgactttggtgac--tttagtgtattttagatgagagagaacgatagatgagtgattaaaataaattattttgatgagagataattattggttaggata 6793509  T
Q  618 gaaataaagacaaagccaccaaa 640  Q
    || ||| |||||||  |||||||    
T  6793508 gagatagagacaaaatcaccaaa 6793486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 534 - 610
Target Start/End: Complemental strand, 512841 - 512765
Alignment:
Q  534 tttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggt 610  Q
    ||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||||| |||| |||||| |||||||    
T  512841 tttagtgtattttagatgagagagaataatagatgagtgattaaaataaattattttgatgagagagaaatattggt 512765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 564 - 631
Target Start/End: Complemental strand, 28067380 - 28067313
Alignment:
Q  564 agatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaa 631  Q
    ||||||||||||||||||||||||||| |||| ||||||| ||||||||| ||||| |||||||||||    
T  28067380 agatgaatgattaaaataaattattttgatgagagagaatgattggttagaagagagataaagacaaa 28067313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 533 - 589
Target Start/End: Complemental strand, 457748 - 457692
Alignment:
Q  533 atttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattt 589  Q
    |||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  457748 atttagtgtattttagatgagagagaatgatggatgaatgattaaaataaattattt 457692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 535 - 589
Target Start/End: Complemental strand, 26847237 - 26847183
Alignment:
Q  535 ttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattt 589  Q
    |||| ||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  26847237 ttagtgtattttagatgagagagaatgatagatgaatgagtaaaataaattattt 26847183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 541 - 613
Target Start/End: Original strand, 32267018 - 32267090
Alignment:
Q  541 tattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttag 613  Q
    ||||||||||||  || |||||||||| |||||||||||||||||||| | |||  |||||||||||||||||    
T  32267018 tattttagatgaatgagaatgatagattaatgattaaaataaattattctgatggaagagaattattggttag 32267090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 278 - 335
Target Start/End: Complemental strand, 24214117 - 24214060
Alignment:
Q  278 ttaaggattttcaaaccatcattatattgggatggaaaacgatgttcaggggcaagac 335  Q
    |||||||||||||||||||| |  ||||||||||||||||||||||| |||| |||||    
T  24214117 ttaaggattttcaaaccatcctcgtattgggatggaaaacgatgttcgggggaaagac 24214060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 543 - 619
Target Start/End: Original strand, 3037376 - 3037452
Alignment:
Q  543 ttttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagaga 619  Q
    |||| |||||||||||||| | ||||||||||||||||||||| |||  |||| ||||||| | |||||| ||||||    
T  3037376 tttttgatgagagaaaatgttggatgaatgattaaaataaattttttagatgaaagagaatgaatggttaagagaga 3037452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 540 - 595
Target Start/End: Original strand, 28729978 - 28730033
Alignment:
Q  540 gtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatga 595  Q
    ||||||||||||||||| |||||||||| | || ||||||||||||||||| ||||    
T  28729978 gtattttagatgagagagaatgatagatcagtgcttaaaataaattattttgatga 28730033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 535 - 589
Target Start/End: Complemental strand, 8585799 - 8585745
Alignment:
Q  535 ttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattt 589  Q
    |||| ||||||||||||| ||| |||||| |||||||||||||||||||| ||||    
T  8585799 ttagtgtattttagatgaaagagaatgatggatgaatgattaaaataaatgattt 8585745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 607
Target Start/End: Complemental strand, 31176064 - 31175973
Alignment:
Q  514 tttggtgacttttgtgacaatttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattatt 607  Q
    ||||||||||||  ||||  ||||| ||||||||||||||| | ||||||||| |  |||||||| ||||||||||| |||  |||||||||||    
T  31176064 tttggtgactttgatgac--tttagtgtattttagatgagaaagaatgatagacgtgtgattaaattaaattattttgatgcaagagaattatt 31175973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 567 - 640
Target Start/End: Complemental strand, 10349216 - 10349144
Alignment:
Q  567 tgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaagccaccaaa 640  Q
    ||||| |||||||||||||||||||| || | | |||||| |||||||||||| ||| |||||||| |||||||    
T  10349216 tgaataattaaaataaattattttaaggagaaa-aattatcggttaggagagagatagagacaaagacaccaaa 10349144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 542 - 603
Target Start/End: Original strand, 28963591 - 28963652
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaat 603  Q
    ||||||||||||||| |||||   ||||||||||||||||| ||||||| |||| |||||||    
T  28963591 attttagatgagagagaatgaagaatgaatgattaaaataacttattttgatgagagagaat 28963652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 570 - 631
Target Start/End: Original strand, 33906583 - 33906644
Alignment:
Q  570 atgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaa 631  Q
    ||||||||||||||| ||||| |||| ||||||||||| ||||| ||||| ||| |||||||    
T  33906583 atgattaaaataaatgattttgatgaaagagaattattcgttagaagagagatagagacaaa 33906644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 590
Target Start/End: Original strand, 9976973 - 9977005
Alignment:
Q  558 aatgatagatgaatgattaaaataaattatttt 590  Q
    |||||||||||||||||||||||||||||||||    
T  9976973 aatgatagatgaatgattaaaataaattatttt 9977005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 641
Target Start/End: Complemental strand, 6139406 - 6139309
Alignment:
Q  544 tttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaagccaccaaaa 641  Q
    |||| |||||||| |||| ||||  |||||||||||||||||||||  |||| ||||||| | ||||||  ||||| |||   |||||| ||||||||    
T  6139406 tttaaatgagagagaatgttagacaaatgattaaaataaattatttagatgagagagaatgaatggttaaaagagagataggaacaaagacaccaaaa 6139309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 6e-36; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 491 - 619
Target Start/End: Original strand, 44132825 - 44132951
Alignment:
Q  491 gaaatacttgagtgattttgtattttggtgacttttgtgacaatttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattatttt 590  Q
    ||||||||||| ||| |||| |||||||||| ||| |||||  ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44132825 gaaatacttgaatgactttgcattttggtgattttggtgac--tttagtgtattttagatgagagataatgatagatgaatgattaaaataaattatttt 44132922  T
Q  591 aatgatagagaattattggttaggagaga 619  Q
     |||| |||||||||||||||| ||||||    
T  44132923 gatgagagagaattattggttaagagaga 44132951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 491 - 590
Target Start/End: Complemental strand, 15136064 - 15135968
Alignment:
Q  491 gaaatacttgagtgattttgtattttggtgacttttgtgacaatttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattatttt 590  Q
    ||||||||||| |||||||||||||| |||||||| |||||   |||| ||||||||||| ||||||| |||||||||| ||||||||||||||||||||    
T  15136064 gaaatacttgaatgattttgtatttttgtgactttggtgac---ttagtgtattttagataagagaaagtgatagatgagtgattaaaataaattatttt 15135968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 492 - 604
Target Start/End: Original strand, 1898050 - 1898160
Alignment:
Q  492 aaatacttgagtgattttgtattttggtgacttttgtgacaatttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattatttta 591  Q
    ||||||||||||||||||| |||||| |||||||  ||||  |||||  |||||||||||||||| ||||||| || | ||||||||||||||||||||     
T  1898050 aaatacttgagtgattttgcattttgatgactttgatgac--tttagtatattttagatgagagagaatgatatataactgattaaaataaattattttg 1898147  T
Q  592 atgatagagaatt 604  Q
    || | ||||||||    
T  1898148 ataaaagagaatt 1898160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 540 - 619
Target Start/End: Complemental strand, 35910670 - 35910593
Alignment:
Q  540 gtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagaga 619  Q
    |||||||||||||||||   ||||| ||||||||||||||||||| ||||| |||| || ||||||||||||||||||||    
T  35910670 gtattttagatgagagag--tgataaatgaatgattaaaataaatcattttgatgagagggaattattggttaggagaga 35910593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 534 - 640
Target Start/End: Original strand, 226339 - 226443
Alignment:
Q  534 tttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaagc 633  Q
    ||||| ||||||||||||| ||| | | |||  ||||||||||||||||||||| || ||||  |||||||||| ||||||||||| ||| ||||||||     
T  226339 tttagtgtattttagatgaaagagagttataattgaatgattaaaataaattatgttgatga--gagaattattagttaggagagagatagagacaaagg 226436  T
Q  634 caccaaa 640  Q
    |||||||    
T  226437 caccaaa 226443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 534 - 640
Target Start/End: Original strand, 702752 - 702856
Alignment:
Q  534 tttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaagc 633  Q
    ||||| ||||||||||||| ||| | | |||  ||||||||||||||||||||| || ||||  |||||||||| ||||||||||| ||| ||||||||     
T  702752 tttagtgtattttagatgaaagagagttataattgaatgattaaaataaattatgttgatga--gagaattattagttaggagagagatagagacaaagg 702849  T
Q  634 caccaaa 640  Q
    |||||||    
T  702850 caccaaa 702856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 534 - 640
Target Start/End: Original strand, 739962 - 740066
Alignment:
Q  534 tttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaagc 633  Q
    ||||| ||||||||||||| ||| | | |||  ||||||||||||||||||||| || ||||  |||||||||| ||||||||||| ||| ||||||||     
T  739962 tttagtgtattttagatgaaagagagttataattgaatgattaaaataaattatgttgatga--gagaattattagttaggagagagatagagacaaagg 740059  T
Q  634 caccaaa 640  Q
    |||||||    
T  740060 caccaaa 740066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 534 - 640
Target Start/End: Original strand, 863857 - 863961
Alignment:
Q  534 tttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaagc 633  Q
    ||||| ||||||||||||| ||| | | |||  ||||||||||||||||||||| || ||||  |||||||||| ||||||||||| ||| ||||||||     
T  863857 tttagtgtattttagatgaaagagagttataattgaatgattaaaataaattatgttgatga--gagaattattagttaggagagagatagagacaaagg 863954  T
Q  634 caccaaa 640  Q
    |||||||    
T  863955 caccaaa 863961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 492 - 640
Target Start/End: Original strand, 6473922 - 6474064
Alignment:
Q  492 aaatacttgagtgattttgtattttggtgacttttgtgacaatttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattatttta 591  Q
    |||||||||| ||| |||||||||| || |||||  ||||  ||||| |||||||||| ||||  |||| ||| |||| |||||||||||||||||||||    
T  6473922 aaatacttgaatgactttgtatttttgtaactttaatgac--tttagtgtattttagacgaga--aaataatatatgagtgattaaaataaattatttta 6474017  T
Q  592 atgatagagaattattggttaggagagaaataaagacaaagccaccaaa 640  Q
    |||  ||| ||||||| ||||| ||||| ||| |||||||  |||||||    
T  6474018 atg--agataattattagttagaagagagatatagacaaaatcaccaaa 6474064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 542 - 617
Target Start/End: Original strand, 20896188 - 20896263
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggaga 617  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||  |||| ||||||| |||| ||| ||||    
T  20896188 attttagatgagagataatgatatatgaatgattaaaataaattatttagatgagagagaatgattgattaagaga 20896263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 560 - 647
Target Start/End: Complemental strand, 41951256 - 41951169
Alignment:
Q  560 tgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaagccaccaaaatcaccg 647  Q
    ||||| |||||||| |||| |||||||| || |||| |||||||||||| |||||||||| ||| |||||||| || |||||||||||    
T  41951256 tgataaatgaatgagtaaattaaattatcttgatgagagagaattattgattaggagagagatagagacaaagtcatcaaaatcaccg 41951169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 534 - 639
Target Start/End: Original strand, 33681267 - 33681370
Alignment:
Q  534 tttagagtattttagatgagagaaaatgatagatgaatgattaaaataaatta-ttttaatgatagagaattattggttaggagagaaataaagacaaag 632  Q
    ||||| ||||||| |||| |||| |||||||||| |||||||||||||||||| |||| |||| |||| || ||||||||||||||  ||| ||||||||    
T  33681267 tttagtgtatttt-gatgtgagagaatgatagataaatgattaaaataaattattttttatgagagagcatgattggttaggagag--atagagacaaag 33681363  T
Q  633 ccaccaa 639  Q
     ||||||    
T  33681364 tcaccaa 33681370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 540 - 589
Target Start/End: Original strand, 10968541 - 10968590
Alignment:
Q  540 gtattttagatgagagaaaatgatagatgaatgattaaaataaattattt 589  Q
    |||||||||||||||||||||  |||||||| ||||||||||||||||||    
T  10968541 gtattttagatgagagaaaatattagatgaaagattaaaataaattattt 10968590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 559 - 632
Target Start/End: Complemental strand, 12964403 - 12964330
Alignment:
Q  559 atgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaag 632  Q
    |||||| ||||||||||||||||||||||||| |||| ||||||| |||| |||  ||||||||| | ||||||    
T  12964403 atgatatatgaatgattaaaataaattattttgatgaaagagaatgattgattaaaagagaaatagacacaaag 12964330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 540 - 593
Target Start/End: Original strand, 20224903 - 20224956
Alignment:
Q  540 gtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaat 593  Q
    ||||||||||| | |||||||||||||| ||| |||||||||||||||||||||    
T  20224903 gtattttagattaaagaaaatgatagataaataattaaaataaattattttaat 20224956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 542 - 589
Target Start/End: Original strand, 4834971 - 4835018
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattt 589  Q
    ||||||||||||||| ||||||  ||||||||||||||||||||||||    
T  4834971 attttagatgagagagaatgatgaatgaatgattaaaataaattattt 4835018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 543 - 625
Target Start/End: Complemental strand, 41650052 - 41649970
Alignment:
Q  543 ttttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaa 625  Q
    ||||||||||||   |||||||||| | ||||||| |||||||||||| || | ||| ||||||| ||||||||||| |||||    
T  41650052 ttttagatgagaattaatgatagataagtgattaagataaattattttgataagagaaaattattcgttaggagagagataaa 41649970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 567 - 616
Target Start/End: Original strand, 42127209 - 42127258
Alignment:
Q  567 tgaatgattaaaataaattattttaatgatagagaattattggttaggag 616  Q
    |||||||||||||||||||||||| |||| | | ||||||||||||||||    
T  42127209 tgaatgattaaaataaattattttgatgagaaataattattggttaggag 42127258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 535 - 609
Target Start/End: Original strand, 26295413 - 26295487
Alignment:
Q  535 ttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattgg 609  Q
    |||| |||||||||||||| || || | | |||||||||| ||| ||||||||||  |||| |||||||||||||    
T  26295413 ttagtgtattttagatgagggagaacggtggatgaatgatcaaagtaaattatttagatgaaagagaattattgg 26295487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 535 - 609
Target Start/End: Original strand, 26308670 - 26308744
Alignment:
Q  535 ttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattgg 609  Q
    |||| |||||||||||||| || || | | |||||||||| ||| ||||||||||  |||| |||||||||||||    
T  26308670 ttagtgtattttagatgagggagaacggtggatgaatgatcaaagtaaattatttagatgaaagagaattattgg 26308744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 542 - 592
Target Start/End: Original strand, 44148212 - 44148262
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattttaa 592  Q
    |||||| ||||||  || ||||||||||| |||||||||||||||||||||    
T  44148212 attttaaatgagatgaagtgatagatgaacgattaaaataaattattttaa 44148262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 619
Target Start/End: Original strand, 15682638 - 15682699
Alignment:
Q  558 aatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagaga 619  Q
    ||||||| |||||||| |||||||| ||||||| |||| | ||||| || ||||||||||||    
T  15682638 aatgatatatgaatgactaaaataagttattttgatgaaaaagaatgatcggttaggagaga 15682699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 611
Target Start/End: Original strand, 25391137 - 25391182
Alignment:
Q  566 atgaatgattaaaataaattattttaatgatagagaattattggtt 611  Q
    ||||||||||||||||||||| ||  |||||||||||||| |||||    
T  25391137 atgaatgattaaaataaattaattagatgatagagaattaatggtt 25391182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 491 - 619
Target Start/End: Original strand, 50041766 - 50041892
Alignment:
Q  491 gaaatacttgagtgattttgtattttggtgacttttgtgacaatttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattatttt 590  Q
    ||||||||||| ||| |||| |||||||||| ||| |||||  ||||| || |||||||||||||| |||||||||||||||||||||||||||||||||    
T  50041766 gaaatacttgaatgactttgcattttggtgattttggtgac--tttagtgtgttttagatgagagataatgatagatgaatgattaaaataaattatttt 50041863  T
Q  591 aatgatagagaattattggttaggagaga 619  Q
     |||| |||||||||||||||| ||||||    
T  50041864 gatgagagagaattattggttaagagaga 50041892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 491 - 619
Target Start/End: Original strand, 50048988 - 50049114
Alignment:
Q  491 gaaatacttgagtgattttgtattttggtgacttttgtgacaatttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattatttt 590  Q
    ||||||||||| ||| |||| |||||||||| ||| |||||  ||||| || |||||||||||||| |||||||||||||||||||||||||||||||||    
T  50048988 gaaatacttgaatgactttgcattttggtgattttggtgac--tttagtgtgttttagatgagagataatgatagatgaatgattaaaataaattatttt 50049085  T
Q  591 aatgatagagaattattggttaggagaga 619  Q
     |||| |||||||||||||||| ||||||    
T  50049086 gatgagagagaattattggttaagagaga 50049114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 534 - 637
Target Start/End: Original strand, 36498592 - 36498695
Alignment:
Q  534 tttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaagc 633  Q
    ||||| |||||||||||||||||  ||||||||||| |||||||||||||||||||| |||  ||||||||||||||||| ||||| ||| ||||||||     
T  36498592 tttagtgtattttagatgagagaggatgatagatgagtgattaaaataaattattttgatgtgagagaattattggttagaagagagatagagacaaagt 36498691  T
Q  634 cacc 637  Q
    ||||    
T  36498692 cacc 36498695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 534 - 613
Target Start/End: Complemental strand, 52198446 - 52198367
Alignment:
Q  534 tttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttag 613  Q
    ||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||| |||| ||| |||||||||||||    
T  52198446 tttagtgtattttagatgagagataatgatagataaatgattaaaataaattattttgatgagagataattattggttag 52198367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 542 - 603
Target Start/End: Original strand, 29544163 - 29544224
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaat 603  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||    
T  29544163 attttagatgagagaaaatgataaatgaatgattaaaataaattatttagatgatagagaat 29544224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 535 - 643
Target Start/End: Original strand, 44015406 - 44015514
Alignment:
Q  535 ttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaagcc 634  Q
    |||| ||||||||||||||| | ||||||||||||||||||||||||||||||||  |||| ||| ||  |||| ||| |||||| ||||  |||| | |    
T  44015406 ttagtgtattttagatgagaaagaatgatagatgaatgattaaaataaattatttagatgagagataaagattgattaagagagagataagaacaatgtc 44015505  T
Q  635 accaaaatc 643  Q
    |||||||||    
T  44015506 accaaaatc 44015514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 589
Target Start/End: Original strand, 19473050 - 19473099
Alignment:
Q  540 gtattttagatgagagaaaatgatagatgaatgattaaaataaattattt 589  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  19473050 gtattttagaggagagaaaatgatacatgaatgattaaaataaattattt 19473099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 566 - 619
Target Start/End: Complemental strand, 33914015 - 33913962
Alignment:
Q  566 atgaatgattaaaataaattattttaatgatagagaattattggttaggagaga 619  Q
    ||||||||||||||||||| ||||| |||| |||||||||||||||||||||||    
T  33914015 atgaatgattaaaataaatcattttgatgagagagaattattggttaggagaga 33913962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 542 - 608
Target Start/End: Complemental strand, 5052178 - 5052112
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattg 608  Q
    |||||| |||||||| ||||||| || |||||||||||||||||||||| |||| ||||||| ||||    
T  5052178 attttaaatgagagagaatgataaataaatgattaaaataaattattttgatgagagagaatgattg 5052112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 542 - 603
Target Start/End: Complemental strand, 23332195 - 23332134
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaat 603  Q
    ||||||||||||||| |||| |||||||||||||||||||  |||||| ||||| |||||||    
T  23332195 attttagatgagagagaatgttagatgaatgattaaaatatgttatttaaatgagagagaat 23332134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 542 - 603
Target Start/End: Original strand, 46079341 - 46079402
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaat 603  Q
    ||||||||||||||| ||||||  ||||||||||||||||||||||||  |||| |||||||    
T  46079341 attttagatgagagagaatgatcaatgaatgattaaaataaattatttagatgagagagaat 46079402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 542 - 603
Target Start/End: Original strand, 52673199 - 52673260
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaat 603  Q
    ||||||||||||||| ||||||  |||||| |||||||||||||||||| |||| |||||||    
T  52673199 attttagatgagagagaatgatgaatgaataattaaaataaattattttgatgagagagaat 52673260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 552 - 619
Target Start/End: Original strand, 30643603 - 30643670
Alignment:
Q  552 agagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagaga 619  Q
    ||||| |||||| |||||||||||||||||||||||||  |||| ||||||| |||| ||| ||||||    
T  30643603 agagataatgatggatgaatgattaaaataaattatttagatgagagagaatgattgattaagagaga 30643670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 558 - 589
Target Start/End: Complemental strand, 27841120 - 27841089
Alignment:
Q  558 aatgatagatgaatgattaaaataaattattt 589  Q
    ||||||||||||||||||||||||||||||||    
T  27841120 aatgatagatgaatgattaaaataaattattt 27841089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 589
Target Start/End: Complemental strand, 29693284 - 29693237
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattt 589  Q
    ||||||||||||||| ||||||| || ||| |||||||||||||||||    
T  29693284 attttagatgagagagaatgataaataaataattaaaataaattattt 29693237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 543 - 589
Target Start/End: Original strand, 29724351 - 29724397
Alignment:
Q  543 ttttagatgagagaaaatgatagatgaatgattaaaataaattattt 589  Q
    |||||||||| ||| ||| ||| ||||||||||||||||||||||||    
T  29724351 ttttagatgatagagaataataaatgaatgattaaaataaattattt 29724397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 539 - 589
Target Start/End: Complemental strand, 53176932 - 53176882
Alignment:
Q  539 agtattttagatgagagaaaatgatagatgaatgattaaaataaattattt 589  Q
    |||||||||||||| |||| || ||  ||||||||||||||||||||||||    
T  53176932 agtattttagatgacagaagataatgaatgaatgattaaaataaattattt 53176882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 619
Target Start/End: Original strand, 32355002 - 32355070
Alignment:
Q  548 gatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagaga 619  Q
    ||||||||| |||||||||||   ||||||||||||||| ||| |||| ||||||| ||||| |||| ||||    
T  32355002 gatgagagataatgatagatg---gattaaaataaattactttgatgaaagagaatgattggctaggcgaga 32355070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 517 - 647
Target Start/End: Original strand, 28640118 - 28640246
Alignment:
Q  517 ggtgacttttgtgacaatttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggag 616  Q
    ||||||||| |||||  ||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||| || | ||||| |||||  |||||||    
T  28640118 ggtgactttggtgac--tttagtgtattttagatgaaagagaatgatagatgaatgattaaaataaattattttgataaaagagagttatttattaggag 28640215  T
Q  617 agaaataaagacaaagccaccaaaatcaccg 647  Q
    | | ||| |||||||| ||||||||||||||    
T  28640216 aaagatagagacaaagtcaccaaaatcaccg 28640246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 491 - 646
Target Start/End: Complemental strand, 21836123 - 21835972
Alignment:
Q  491 gaaatacttgagtgattttgtattttggtgacttttgtgacaatttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattatttt 590  Q
    ||||||||||||||||| || ||||| ||||||||  ||||  ||||| |||||| ||| |||||||  |||||||||| ||||||||||||||||||||    
T  21836123 gaaatacttgagtgattctgcattttcgtgactttgatgac--tttagtgtatttcagaagagagaa--tgatagatgagtgattaaaataaattatttt 21836028  T
Q  591 aatgatagagaattattggttaggagagaaataaagacaaagccaccaaaatcacc 646  Q
     ||||   | ||||||||||||||| ||| ||| |||||||| |||||||||||||    
T  21836027 gatgaggaaaaattattggttaggaaagagatagagacaaagtcaccaaaatcacc 21835972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 556 - 631
Target Start/End: Complemental strand, 1208692 - 1208617
Alignment:
Q  556 aaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaa 631  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||| ||| |||||||    
T  1208692 aaaatgatagatgagtgattaaaataaattattttaatgagagagaattattggttaagagagagatagagacaaa 1208617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 542 - 603
Target Start/End: Complemental strand, 23396023 - 23395962
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaat 603  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||  ||||||||||||    
T  23396023 attttagatgagagagaatgataaatgaatgattaaaataaattatttagatgatagagaat 23395962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 542 - 619
Target Start/End: Original strand, 32832594 - 32832671
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagaga 619  Q
    ||||||||||||||| |||| | |||||||||||||||||||||||||  |||| ||||||| | |||||| ||||||    
T  32832594 attttagatgagagagaatgttggatgaatgattaaaataaattatttagatgagagagaatgaatggttaagagaga 32832671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 534 - 630
Target Start/End: Original strand, 13772777 - 13772873
Alignment:
Q  534 tttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaa 630  Q
    ||||| ||||||||||||| | | ||| |||||||| |||||||| ||||| ||||| |||| ||| ||||||| ||||||||||| ||| ||||||    
T  13772777 tttagtgtattttagatgaaaaagaataatagatgagtgattaaattaaatcattttgatgagagaaaattattcgttaggagagagatatagacaa 13772873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 542 - 589
Target Start/End: Original strand, 6752075 - 6752122
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattt 589  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  6752075 attttagatgagagagaatgataaatgaatgattaaaataaattattt 6752122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 581 - 646
Target Start/End: Complemental strand, 14818759 - 14818694
Alignment:
Q  581 aaattattttaatgatagagaattattggttaggagagaaataaagacaaagccaccaaaatcacc 646  Q
    |||||||||| |||| |||||||||||||||| |||||| ||| |||||||| ||||||| |||||    
T  14818759 aaattattttgatgagagagaattattggttatgagagagatagagacaaagtcaccaaagtcacc 14818694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 542 - 603
Target Start/End: Complemental strand, 39729076 - 39729015
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaat 603  Q
    ||||||||||||||| ||||||  ||||||||||||||||||||||||  |||| |||||||    
T  39729076 attttagatgagagagaatgatgaatgaatgattaaaataaattatttagatgagagagaat 39729015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 542 - 603
Target Start/End: Original strand, 41069674 - 41069735
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaat 603  Q
    ||||||||||||||| ||||||  ||||||||||||||||||||||||  |||| |||||||    
T  41069674 attttagatgagagagaatgatgaatgaatgattaaaataaattatttagatgagagagaat 41069735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 541 - 589
Target Start/End: Original strand, 40204727 - 40204775
Alignment:
Q  541 tattttagatgagagaaaatgatagatgaatgattaaaataaattattt 589  Q
    ||||||| |||||||| |||||||||||||| |||||||||||||||||    
T  40204727 tattttacatgagagagaatgatagatgaattattaaaataaattattt 40204775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 540 - 623
Target Start/End: Original strand, 13477688 - 13477771
Alignment:
Q  540 gtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaata 623  Q
    ||||||| ||| ||||| ||||||  ||||||||||||||||| |||||| ||||| ||||| | |||| ||| ||||||||||    
T  13477688 gtattttggataagagagaatgatgaatgaatgattaaaataatttatttaaatgagagagactgattgattaagagagaaata 13477771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 566 - 608
Target Start/End: Complemental strand, 8209359 - 8209317
Alignment:
Q  566 atgaatgattaaaataaattattttaatgatagagaattattg 608  Q
    ||||||||||||||||||||||||| |||| ||||||||||||    
T  8209359 atgaatgattaaaataaattattttgatgagagagaattattg 8209317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 534 - 589
Target Start/End: Original strand, 38529873 - 38529928
Alignment:
Q  534 tttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattt 589  Q
    |||| |||||| ||||||||||| ||| ||  ||||||||||||||||||||||||    
T  38529873 tttaaagtattctagatgagagataataatttatgaatgattaaaataaattattt 38529928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 542 - 632
Target Start/End: Complemental strand, 11226236 - 11226146
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaag 632  Q
    |||||| |||||||| |||||   ||||||||||||||||||||||||  |||| ||||||| | | |||| |||||| ||| | ||||||    
T  11226236 attttaaatgagagagaatgacgaatgaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaag 11226146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 492 - 637
Target Start/End: Original strand, 3622155 - 3622298
Alignment:
Q  492 aaatacttgagtgattttgtattttggtgacttttgtgacaatttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattatttta 591  Q
    |||||||||||||| |||  |||||||||||||| || |   ||||| |||||||||||||| || ||||||| | || ||||||||||||||||||||     
T  3622155 aaatacttgagtgactttacattttggtgactttggtaat--tttagtgtattttagatgagtgagaatgatatacgagtgattaaaataaattattttg 3622252  T
Q  592 atgatagagaattattggttaggagagaaataaagacaaagccacc 637  Q
    |||| ||| ||||||||||||| ||||| ||| |||||||| ||||    
T  3622253 atgagagaaaattattggttagaagagagatagagacaaagtcacc 3622298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 545 - 615
Target Start/End: Complemental strand, 9956694 - 9956624
Alignment:
Q  545 ttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttagga 615  Q
    ||||||||||||| |||||| |||| |||||||||||||||||||| |||| |||||||||||||||||||    
T  9956694 ttagatgagagaagatgataaatgagtgattaaaataaattattttgatgagagagaattattggttagga 9956624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 541 - 603
Target Start/End: Complemental strand, 19824675 - 19824613
Alignment:
Q  541 tattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaat 603  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||  |||| |||||||    
T  19824675 tattttagatgagagagaatgttagatgaatgattaaaataaattatttagatgagagagaat 19824613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 535 - 608
Target Start/End: Complemental strand, 33953225 - 33953152
Alignment:
Q  535 ttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattg 608  Q
    |||| ||||||||||||||||| |||| | ||||||| |||||||||||||||||  |||| ||||||||||||    
T  33953225 ttagtgtattttagatgagagagaatggtggatgaataattaaaataaattatttagatgagagagaattattg 33953152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 542 - 589
Target Start/End: Complemental strand, 34928884 - 34928837
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattt 589  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  34928884 attttagatgagagagaatgataaatgaatgattaaaataaattattt 34928837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 541 - 589
Target Start/End: Original strand, 14281809 - 14281858
Alignment:
Q  541 tattttagatgagagaaaatgatagatgaatg-attaaaataaattattt 589  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  14281809 tattttagatgagagagaatgatagatgaatgtattaaaataaattattt 14281858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 548 - 632
Target Start/End: Original strand, 17250474 - 17250558
Alignment:
Q  548 gatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaag 632  Q
    ||||| ||| ||||||||||||||||||||| ||||||||||| |||| ||| ||| |||| |||| | ||| ||| ||||||||    
T  17250474 gatgaaagagaatgatagatgaatgattaaagtaaattattttgatgagagaaaatgattgattagaatagagatagagacaaag 17250558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 541 - 589
Target Start/End: Original strand, 22029850 - 22029898
Alignment:
Q  541 tattttagatgagagaaaatgatagatgaatgattaaaataaattattt 589  Q
    |||||||||||||||| |||| | |||||||||||||||||||||||||    
T  22029850 tattttagatgagagagaatgttggatgaatgattaaaataaattattt 22029898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 539 - 619
Target Start/End: Complemental strand, 28975656 - 28975577
Alignment:
Q  539 agtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagaga 619  Q
    ||||| || ||||| ||||||||||| || |||||||||||||||||||||| || ||| | ||| |||||||||||||||    
T  28975656 agtatatttgatgaaagaaaatgataaataaatgattaaaataaattattttgataata-aaaatgattggttaggagaga 28975577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 560 - 624
Target Start/End: Complemental strand, 32821988 - 32821924
Alignment:
Q  560 tgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataa 624  Q
    |||||||| ||||||||||||||||||||||||||||| ||||  |||| ||| |||||| ||||    
T  32821988 tgatagattaatgattaaaataaattattttaatgataaagaaagattgattaagagagatataa 32821924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 552 - 589
Target Start/End: Original strand, 18623597 - 18623634
Alignment:
Q  552 agagaaaatgatagatgaatgattaaaataaattattt 589  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  18623597 agagagaatgatagatgaatgattaaaataaattattt 18623634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 542 - 595
Target Start/End: Complemental strand, 22658917 - 22658864
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattttaatga 595  Q
    ||||||||||| ||| ||||||  |||||||||||||||||||||||| |||||    
T  22658917 attttagatgaaagagaatgatgaatgaatgattaaaataaattatttaaatga 22658864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 535 - 584
Target Start/End: Original strand, 33922856 - 33922905
Alignment:
Q  535 ttagagtattttagatgagagaaaatgatagatgaatgattaaaataaat 584  Q
    |||| ||||| ||||||||||| ||||||| |||||||||||||||||||    
T  33922856 ttagtgtattctagatgagagagaatgataaatgaatgattaaaataaat 33922905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 563 - 612
Target Start/End: Complemental strand, 37484885 - 37484836
Alignment:
Q  563 tagatgaatgattaaaataaattattttaatgatagagaattattggtta 612  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||| ||||    
T  37484885 tagatgaatgattaaaataaattattttgatgaaagaaaattattagtta 37484836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 534 - 637
Target Start/End: Original strand, 3622320 - 3622423
Alignment:
Q  534 tttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaagc 633  Q
    ||||| |||||||| |||||||| ||||||| | || | |||||||||||||||||| |||| | | || |||| ||||| ||||| ||| ||| ||||     
T  3622320 tttagtgtattttatatgagagagaatgatatacgagtaattaaaataaattattttgatgagaaataactatttgttagaagagagatagagataaagt 3622419  T
Q  634 cacc 637  Q
    ||||    
T  3622420 cacc 3622423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 589
Target Start/End: Original strand, 14151943 - 14151990
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattt 589  Q
    ||||||||||||||| ||| ||  ||||||||||||||||||||||||    
T  14151943 attttagatgagagataataatgaatgaatgattaaaataaattattt 14151990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 534 - 631
Target Start/End: Original strand, 8230771 - 8230867
Alignment:
Q  534 tttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaa 631  Q
    ||||| ||||||||||||| ||| | ||||   | |||||||||||||||||||||| |||| | | | |||||| |||||||||| ||| |||||||    
T  8230771 tttagtgtattttagatgaaagagagtgatgattaaatgattaaaataaattattttgatgaga-aaagttattgattaggagagagatagagacaaa 8230867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 8e-20; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 534 - 632
Target Start/End: Original strand, 19431383 - 19431481
Alignment:
Q  534 tttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaag 632  Q
    ||||| ||||||||||||||| | |||||| |||||||||||||||||||||||||  |||| ||||||| |||||||| |||||| ||| | ||||||    
T  19431383 tttagtgtattttagatgagacagaatgatggatgaatgattaaaataaattatttagatgagagagaatgattggttaagagagatatagacacaaag 19431481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 542 - 619
Target Start/End: Original strand, 3950296 - 3950373
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagaga 619  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||| |||| ||||||| |||| ||| ||||||    
T  3950296 attttagatgagagagaatgatcgatgaatgattaaaataaattattttgatgaaagagaataattgattaagagaga 3950373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 534 - 639
Target Start/End: Original strand, 46325584 - 46325688
Alignment:
Q  534 tttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaagc 633  Q
    ||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||| |||| ||| ||||||  || ||||||||     
T  46325584 tttagtgtatttt-gatgagagagaatgatagatgaatgattaaaataagttattttgatgagagagaatgattgattatgagagagttagagacaaagt 46325682  T
Q  634 caccaa 639  Q
    ||||||    
T  46325683 caccaa 46325688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 534 - 617
Target Start/End: Original strand, 33939589 - 33939672
Alignment:
Q  534 tttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggaga 617  Q
    ||||| |||||| |||||| ||||| || |   ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33939589 tttagtgtatttaagatgaaagaaagtggtgattgaatgattaaaataaattattttaatgataaagaattattggttaggaga 33939672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 534 - 632
Target Start/End: Original strand, 11872181 - 11872279
Alignment:
Q  534 tttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaag 632  Q
    ||||| ||||||||||||| ||| ||||||   |||||||||| ||||||||||||| |||| |||||||||||||||| |||||| ||| | ||||||    
T  11872181 tttagtgtattttagatgaaagagaatgatgattgaatgattataataaattattttgatgagagagaattattggttatgagagatatagaaacaaag 11872279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 535 - 619
Target Start/End: Original strand, 44448492 - 44448576
Alignment:
Q  535 ttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagaga 619  Q
    |||| |||||||||||| |||| ||||||| |||||||||||||||||||||||| ||||| | | ||| |||| ||||||||||    
T  44448492 ttagtgtattttagatgggagagaatgatatatgaatgattaaaataaattatttaaatgagataaaatgattgattaggagaga 44448576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 548 - 639
Target Start/End: Complemental strand, 46325497 - 46325408
Alignment:
Q  548 gatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaagccaccaa 639  Q
    ||||||||  ||||||||||||||||||||||||||||||||| |||  ||||||| |||| ||| |||||| ||| |||||||| ||||||    
T  46325497 gatgagagggaatgatagatgaatgattaaaataaattattttgatg--agagaatgattgattatgagagagatagagacaaagtcaccaa 46325408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 534 - 632
Target Start/End: Original strand, 17368389 - 17368487
Alignment:
Q  534 tttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaag 632  Q
    ||||| ||||||||||||| ||| | ||||   ||||| |||||||||||||||||| |||| ||||||||||||||||||| ||| | | ||||||||    
T  17368389 tttagtgtattttagatgaaagagagtgatgattgaataattaaaataaattattttgatgagagagaattattggttaggaaagagacagagacaaag 17368487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 534 - 642
Target Start/End: Complemental strand, 26056888 - 26056777
Alignment:
Q  534 tttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattg---gttaggagagaaataaagacaa 630  Q
    ||||| ||||||||||||||| | | |||||||| ||| ||||||||||||||||||||| | ||||||||| |    ||||| ||||| ||||||||||    
T  26056888 tttagtgtattttagatgagatagagtgatagataaataattaaaataaattattttaataaaagagaattactacttgttagaagagagataaagacaa 26056789  T
Q  631 agccaccaaaat 642  Q
    || || ||||||    
T  26056788 agtcatcaaaat 26056777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 542 - 603
Target Start/End: Original strand, 48914986 - 48915047
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaat 603  Q
    ||||||||||||||| ||||||  ||||||||||||||||||||||||| |||| |||||||    
T  48914986 attttagatgagagagaatgatgaatgaatgattaaaataaattattttgatgagagagaat 48915047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 542 - 603
Target Start/End: Original strand, 48915377 - 48915438
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaat 603  Q
    ||||||||||||||| ||||||  ||||||||||||||||||||||||| |||| |||||||    
T  48915377 attttagatgagagagaatgatgaatgaatgattaaaataaattattttgatgagagagaat 48915438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 548 - 637
Target Start/End: Original strand, 49315741 - 49315830
Alignment:
Q  548 gatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaagccacc 637  Q
    ||||||||| |||| ||||||| |||||||||||||||||||| |||| | | |||||||| ||| |||||| ||| |||||||| ||||    
T  49315741 gatgagagagaatggtagatgagtgattaaaataaattattttgatgaaatataattattgattatgagagagatagagacaaagtcacc 49315830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 560 - 640
Target Start/End: Original strand, 7537002 - 7537082
Alignment:
Q  560 tgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaagccaccaaa 640  Q
    ||||| || |||||||||||||||||||||| || | ||||| | ||||||||||||||| ||| |||||||| |||||||    
T  7537002 tgatatataaatgattaaaataaattattttgataaaagagagtgattggttaggagagagatagagacaaagtcaccaaa 7537082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 542 - 617
Target Start/End: Complemental strand, 24671246 - 24671171
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggaga 617  Q
    ||||||||||||||| | ||||  |||||||||||||||||||||||| ||||| ||||||| | |||||| ||||    
T  24671246 attttagatgagagagagtgatgaatgaatgattaaaataaattatttaaatgagagagaatgagtggttaagaga 24671171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 543 - 589
Target Start/End: Complemental strand, 49177483 - 49177438
Alignment:
Q  543 ttttagatgagagaaaatgatagatgaatgattaaaataaattattt 589  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||    
T  49177483 ttttagatgagagaaaatgat-gatgaatgattaaaataaattattt 49177438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 540 - 640
Target Start/End: Original strand, 4213839 - 4213939
Alignment:
Q  540 gtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaagccaccaa 639  Q
    ||||||||||||||||| || |||| |||| |||||||||||||||||||| |  | ||| |||||||| || | ||||| | | |||||||| ||||||    
T  4213839 gtattttagatgagagagaacgatatatgagtgattaaaataaattattttgagaagagataattattgattggaagagagacagagacaaagtcaccaa 4213938  T
Q  640 a 640  Q
    |    
T  4213939 a 4213939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 569 - 632
Target Start/End: Complemental strand, 37719107 - 37719044
Alignment:
Q  569 aatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaag 632  Q
    ||||| |||||||||||||||| |||| ||| ||||||||||||||||| | ||| ||||||||    
T  37719107 aatgaataaaataaattattttgatgagagataattattggttaggagaaagatatagacaaag 37719044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 567 - 637
Target Start/End: Original strand, 31108760 - 31108830
Alignment:
Q  567 tgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaagccacc 637  Q
    ||||||||||||||||| |||||| |||  ||| ||||||||||||||||||| | | |||||||| ||||    
T  31108760 tgaatgattaaaataaactattttgatgtgagaaaattattggttaggagagagacagagacaaaggcacc 31108830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 542 - 603
Target Start/End: Original strand, 48915178 - 48915237
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaat 603  Q
    ||||||||||||||||  ||||  ||||||||||||||||||||||||| |||| |||||||    
T  48915178 attttagatgagagaa--tgatgaatgaatgattaaaataaattattttgatgagagagaat 48915237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 578 - 631
Target Start/End: Original strand, 4347451 - 4347504
Alignment:
Q  578 aataaattattttaatgatagagaattattggttaggagagaaataaagacaaa 631  Q
    ||||||||||||| |||| ||||||||||| ||||| ||||| |||||||||||    
T  4347451 aataaattattttgatgaaagagaattattagttagaagagatataaagacaaa 4347504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 560 - 601
Target Start/End: Complemental strand, 6286498 - 6286457
Alignment:
Q  560 tgatagatgaatgattaaaataaattattttaatgatagaga 601  Q
    |||| ||||||||||||||||| |||||||||||||||||||    
T  6286498 tgattgatgaatgattaaaatatattattttaatgatagaga 6286457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 553 - 589
Target Start/End: Complemental strand, 15106287 - 15106251
Alignment:
Q  553 gagaaaatgatagatgaatgattaaaataaattattt 589  Q
    |||| ||||||||||||||||||||||||||||||||    
T  15106287 gagagaatgatagatgaatgattaaaataaattattt 15106251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 522 - 589
Target Start/End: Complemental strand, 34430119 - 34430054
Alignment:
Q  522 cttttgtgacaatttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattt 589  Q
    |||||||||||  |||| | ||||||||||||| | || | |||||||||||||||||||||||||||    
T  34430119 cttttgtgaca--ttagtgcattttagatgagaaagaaagttagatgaatgattaaaataaattattt 34430054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 542 - 603
Target Start/End: Original strand, 19456311 - 19456372
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaat 603  Q
    ||||||||||||||| ||||||  ||  ||||||||||||||||||||  |||| |||||||    
T  19456311 attttagatgagagagaatgatgaatagatgattaaaataaattatttagatgagagagaat 19456372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 542 - 595
Target Start/End: Complemental strand, 26478652 - 26478599
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattttaatga 595  Q
    ||||||||||||||| ||||||  |||||| |||||||||||| |||| |||||    
T  26478652 attttagatgagagagaatgatgaatgaataattaaaataaatcatttaaatga 26478599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 540 - 585
Target Start/End: Original strand, 50175961 - 50176006
Alignment:
Q  540 gtattttagatgagagaaaatgatagatgaatgattaaaataaatt 585  Q
    |||||||||||||||| ||| |||  ||||||||||||||||||||    
T  50175961 gtattttagatgagaggaaaagatgaatgaatgattaaaataaatt 50176006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 534 - 615
Target Start/End: Complemental strand, 34305885 - 34305804
Alignment:
Q  534 tttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttagga 615  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||| |||| ||||  ||||| |||||||    
T  34305885 tttagagtattttagatgagagagaatgatagatgagtgattaaaatatattattttgatgagagaggcttatttgttagga 34305804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 542 - 632
Target Start/End: Complemental strand, 10688698 - 10688608
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaag 632  Q
    ||||||||||||||| ||||||  ||||||||||||||||||||||||  |||| ||||||| | | |||| |||||| ||| | ||||||    
T  10688698 attttagatgagagagaatgatgaatgaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaag 10688608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 567 - 640
Target Start/End: Complemental strand, 52404758 - 52404685
Alignment:
Q  567 tgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaagccaccaaa 640  Q
    ||||| |||||||||||||||||| |||| | | |||||||| |||||||||| ||| |||||||| |||||||    
T  52404758 tgaataattaaaataaattattttgatgaaaaataattattgattaggagagagatagagacaaagacaccaaa 52404685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 565 - 611
Target Start/End: Complemental strand, 20345118 - 20345072
Alignment:
Q  565 gatgaatgattaaaataaattattttaatgatagagaattattggtt 611  Q
    ||||||||||||||||||||||||| ||||| ||||||| |||||||    
T  20345118 gatgaatgattaaaataaattatttaaatgagagagaatgattggtt 20345072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 539 - 624
Target Start/End: Complemental strand, 16278865 - 16278780
Alignment:
Q  539 agtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataa 624  Q
    |||||||||||| ||| | |||||| ||||||| |||||||||||||||||   ||||| ||||| |||| ||| |||||| ||||    
T  16278865 agtattttagataagaaagaatgatggatgaataattaaaataaattatttaggtgataaagaataattgattaagagagagataa 16278780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 561 - 636
Target Start/End: Original strand, 19138401 - 19138476
Alignment:
Q  561 gatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaagccac 636  Q
    ||||||| ||||||||| | |||||||||| |||| | ||||| |||||| |||| ||| ||||||||||| ||||    
T  19138401 gatagataaatgattaatacaaattattttgatgagaaagaatgattggtaaggacagacataaagacaaacccac 19138476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 589
Target Start/End: Original strand, 39485471 - 39485518
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattt 589  Q
    ||||||||||||||| || | | |||||||||||||||||||||||||    
T  39485471 attttagatgagagagaaggttggatgaatgattaaaataaattattt 39485518  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 558 - 604
Target Start/End: Original strand, 43170419 - 43170465
Alignment:
Q  558 aatgatagatgaatgattaaaataaattattttaatgatagagaatt 604  Q
    ||||||||| || ||||||||||||||||||||||||| ||| ||||    
T  43170419 aatgatagaggagtgattaaaataaattattttaatgaaagataatt 43170465  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 632
Target Start/End: Complemental strand, 7654639 - 7654554
Alignment:
Q  548 gatgagagaaaatgatagatgaatgattaaaataaatta-ttttaatgatagagaattattggttaggagagaaataaagacaaag 632  Q
    ||||||||| |||| ||||||||||||||| ||| |||| |||| |||| ||||||| |||| |||||| | | |||| |||||||    
T  7654639 gatgagagagaatggtagatgaatgattaatatatattatttttcatgagagagaatgattgattaggaaaaagataatgacaaag 7654554  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 619
Target Start/End: Original strand, 42681853 - 42681914
Alignment:
Q  558 aatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagaga 619  Q
    |||||||||||| | |||||||||||||||||| ||   ||| ||||||||| |||||||||    
T  42681853 aatgatagatgagtaattaaaataaattattttgatagaagataattattggctaggagaga 42681914  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 542 - 603
Target Start/End: Original strand, 46348393 - 46348454
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaat 603  Q
    ||||||||||||||| ||||||  |||||| ||||| ||||| ||||| ||||| |||||||    
T  46348393 attttagatgagagagaatgatgaatgaattattaagataaactatttaaatgagagagaat 46348454  T

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Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 541 - 646
Target Start/End: Original strand, 27311776 - 27311879
Alignment:
Q  541 tattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaagccaccaaa 640  Q
    ||||||||||||||||   ||||||||||||||||||||||| ||||||| |||  ||||||||||| |||| |||||| ||| ||  |||| |||||||    
T  27311776 tattttagatgagagag--tgatagatgaatgattaaaataatttattttgatgtgagagaattattagttaagagagagatagagttaaagtcaccaaa 27311873  T
Q  641 atcacc 646  Q
    ||||||    
T  27311874 atcacc 27311879  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 642
Target Start/End: Original strand, 42691095 - 42691170
Alignment:
Q  567 tgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaagccaccaaaat 642  Q
    |||||||||||||||||||||||| |||| |||||||||||  |||||||||| ||| |||||||| |||| ||||    
T  42691095 tgaatgattaaaataaattattttgatgagagagaattattaattaggagagagatagagacaaaggcacccaaat 42691170  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 535 - 589
Target Start/End: Complemental strand, 32204839 - 32204785
Alignment:
Q  535 ttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattt 589  Q
    |||| |||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  32204839 ttagtgtattttagatgagagaagatgatagataaatgattaaaataaattattt 32204785  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 541 - 640
Target Start/End: Original strand, 42971643 - 42971742
Alignment:
Q  541 tattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaagccaccaaa 640  Q
    |||||||||||||||| |||| | |  ||||||||||||||||||||||  |||| ||||||||  |||||| |||||| ||| | |||||| |||||||    
T  42971643 tattttagatgagagagaatgttgggcgaatgattaaaataaattatttagatgagagagaattgatggttaagagagagatagaaacaaaggcaccaaa 42971742  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 534 - 612
Target Start/End: Original strand, 22715809 - 22715887
Alignment:
Q  534 tttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggtta 612  Q
    ||||| ||||||||||||| ||| | |||||||| |||||||||||||||||||||| | || ||| ||||||| ||||    
T  22715809 tttagtgtattttagatgaaagagagtgatagataaatgattaaaataaattattttgacgagagaaaattatttgtta 22715887  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 542 - 600
Target Start/End: Original strand, 32279295 - 32279353
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagag 600  Q
    ||||||||||||||||||||||  |||||| ||||||||||||||||| ||||| ||||    
T  32279295 attttagatgagagaaaatgatgaatgaataattaaaataaattatttaaatgagagag 32279353  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 587
Target Start/End: Original strand, 33957481 - 33957527
Alignment:
Q  541 tattttagatgagagaaaatgatagatgaatgattaaaataaattat 587  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||    
T  33957481 tattttagatgagaaagaatgatagatgaatgattaaaataaattat 33957527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 566 - 640
Target Start/End: Original strand, 38701532 - 38701606
Alignment:
Q  566 atgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaagccaccaaa 640  Q
    |||| |||||||||| ||||||||| |||| ||||||||||||||||| ||||| ||| | |||||| |||||||    
T  38701532 atgagtgattaaaattaattattttgatgaaagagaattattggttagaagagatatagaaacaaagtcaccaaa 38701606  T

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Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 558 - 595
Target Start/End: Complemental strand, 43279282 - 43279245
Alignment:
Q  558 aatgatagatgaatgattaaaataaattattttaatga 595  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43279282 aatgatagatgaatgattaaaataaattattttaatga 43279245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 540 - 593
Target Start/End: Original strand, 44309415 - 44309468
Alignment:
Q  540 gtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaat 593  Q
    ||||||||||| | |||||||||||||| ||| |||||||||||||||||||||    
T  44309415 gtattttagattaaagaaaatgatagataaataattaaaataaattattttaat 44309468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 589
Target Start/End: Original strand, 11369056 - 11369103
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattt 589  Q
    ||||||||||||||| |||| | ||| |||||||||||||||||||||    
T  11369056 attttagatgagagagaatgttggataaatgattaaaataaattattt 11369103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 540 - 590
Target Start/End: Complemental strand, 23021258 - 23021210
Alignment:
Q  540 gtattttagatgagagaaaatgatagatgaatgattaaaataaattatttt 590  Q
    |||||||||||||||||   |||||||| ||||||||||||||||||||||    
T  23021258 gtattttagatgagagag--tgatagataaatgattaaaataaattatttt 23021210  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 589
Target Start/End: Original strand, 37685191 - 37685238
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattt 589  Q
    |||||||| |||||| |||| | |||||||||||||||||||||||||    
T  37685191 attttagacgagagagaatgttggatgaatgattaaaataaattattt 37685238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 534 - 576
Target Start/End: Complemental strand, 8686004 - 8685962
Alignment:
Q  534 tttagagtattttagatgagagaaaatgatagatgaatgatta 576  Q
    ||||| ||||||||||||||| |||||||| ||||||||||||    
T  8686004 tttagtgtattttagatgagaaaaaatgatggatgaatgatta 8685962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 553 - 639
Target Start/End: Original strand, 30061154 - 30061240
Alignment:
Q  553 gagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaagccaccaa 639  Q
    ||||||||||| |||  ||||||||||||||||||||  |||| ||| |||||||| |||  ||||| ||||| |||| | ||||||    
T  30061154 gagaaaatgattgatagatgattaaaataaattatttagatgagagaaaattattgattaacagagagataaaaacaatgtcaccaa 30061240  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 542 - 608
Target Start/End: Complemental strand, 40591105 - 40591039
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattg 608  Q
    ||||||||||| | | |||| ||||| |||||||||||||||||||||  |||| ||||||| ||||    
T  40591105 attttagatgaaatagaatgttagataaatgattaaaataaattatttagatgaaagagaataattg 40591039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 542 - 603
Target Start/End: Original strand, 2628437 - 2628498
Alignment:
Q  542 attttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaat 603  Q
    ||||||||||||||| ||||||  || ||||||||||||||| |||||  |||| |||||||    
T  2628437 attttagatgagagagaatgatgaataaatgattaaaataaactatttagatgagagagaat 2628498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 563 - 608
Target Start/End: Complemental strand, 19699927 - 19699882
Alignment:
Q  563 tagatgaatgattaaaataaattattttaatgatagagaattattg 608  Q
    |||||||||||||||||||||||||||| |||| |||  |||||||    
T  19699927 tagatgaatgattaaaataaattattttgatgagagaatattattg 19699882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 552 - 589
Target Start/End: Original strand, 43368497 - 43368534
Alignment:
Q  552 agagaaaatgatagatgaatgattaaaataaattattt 589  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  43368497 agagagaatgatggatgaatgattaaaataaattattt 43368534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 534 - 612
Target Start/End: Complemental strand, 31669 - 31591
Alignment:
Q  534 tttagagtattttagatgagagaaaatgatagatgaatgattaaaataaattattttaatgatagagaattattggtta 612  Q
    ||||| |||||||||| |||||| ||| ||||||||||||||||||||||||||||  |||||| | ||| ||||||||    
T  31669 tttagtgtattttagacgagagagaataatagatgaatgattaaaataaattatttagatgataaaaaatgattggtta 31591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 646
Target Start/End: Original strand, 263758 - 263846
Alignment:
Q  558 aatgatagatgaatgattaaaataaattattttaatgatagagaattattggttaggagagaaataaagacaaagccaccaaaatcacc 646  Q
    ||||||| |||||||||||||||||||| |||| || | ||| | | ||||||||||| ||| ||||| |||||| || ||| ||||||    
T  263758 aatgatacatgaatgattaaaataaattcttttgataagagaaagtgattggttaggaaagagataaaaacaaagtcatcaatatcacc 263846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 591
Target Start/End: Original strand, 8121 - 8154
Alignment:
Q  558 aatgatagatgaatgattaaaataaattatttta 591  Q
    ||||||| ||||||||||||||||||||||||||    
T  8121 aatgataaatgaatgattaaaataaattatttta 8154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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