View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4357-Insertion-7 (Length: 695)
Name: NF4357-Insertion-7
Description: NF4357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4357-Insertion-7 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 603; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 8 - 695
Target Start/End: Complemental strand, 7307196 - 7306514
Alignment:
| Q |
8 |
aattctagaggtaaaataaaatccattaatctttctgaacatcatgttaagaagttcatcgacaatttgatgaaaatgggttccatgaacaagacctgag |
107 |
Q |
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| T |
7307196 |
aattctagaggtaaaataaaatccattaatctttctgaacatcatgttaagaagtccatcgacaatttgatgaaaatgggttccatgaactagacctgag |
7307097 |
T |
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| Q |
108 |
agtgttaaagctatgcacgcttcatgctgccggtaccagactttttattttggaaaggaatcaacaaatacataatttggagacgagatagcctcgcaat |
207 |
Q |
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| T |
7307096 |
agtgttaaagctatgcacgcttgatgctgccggtaccagactttttattttggaaaggaatcaacaaatacataatttggagacgagatagcctcgcaat |
7306997 |
T |
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| Q |
208 |
atctgagtctcattctgatacaatcttttcggaagttactagcggacattcggtgggagttgtgtactaatatcaagtactcgggaagtttattgagaac |
307 |
Q |
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| T |
7306996 |
atctgagtctcattctgatacaatcttttcagaagtttctagcggacattcggtgggagttgtgtactaatatcaagtactcgggag-----ttgagaac |
7306902 |
T |
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| Q |
308 |
caacggttggggtatttccaattcaatgtccaagaggaaagcagttaaaattccataacttcaaaggaacaaatacattgcaaaacacagcatggggtga |
407 |
Q |
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| T |
7306901 |
caacggttggggtatttccaattcaatgtccaagaggaaagcagttaaaattccataacttcaaaggaacaaatacattgcaaaacacagcatggggtga |
7306802 |
T |
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| Q |
408 |
tatttcttccctaaatctaagtgttcacgagatgttacgcatacatgacccaaagagccaatcactttatatgattgacatgcatttggtcgatcttgaa |
507 |
Q |
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| T |
7306801 |
tatttcttccctaaatcgaagtgttcacgagatgttacgcatacatgacccaaagtgccaatcactttatatgattgacatgcatttggtcgatcttgaa |
7306702 |
T |
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| Q |
508 |
ataccgtaacaaattggtttttaatgaacaagatttgtgataaaggtccaatcattaacaagttannnnnnnatggtctgatcatgaattaaagcaaatg |
607 |
Q |
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| T |
7306701 |
ataccgtaacaaattggtttttgatgaacaagatttgtgataaaggtccaatcattaacaagttatttttgtatggtctgatcatgaattaaagcaaatg |
7306602 |
T |
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| Q |
608 |
ttcaaggattctgcttttaattgctatcattggagtatacaacatctccaattcttagggtgatgttcattggttttgggttctgata |
695 |
Q |
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| T |
7306601 |
ttcaaggattctgcttttaatttctatcattggagtatacaacatctccaatgcttagggtgatgttcattggttttgggttctgata |
7306514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 32 - 461
Target Start/End: Complemental strand, 7288206 - 7287775
Alignment:
| Q |
32 |
attaatctttctgaacatcatgttaagaagttcatcgacaatttgatgaaaatgggttccatgaacaagacctgagagtgttaaagctatgcacgcttca |
131 |
Q |
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| T |
7288206 |
attaatctttctgaacatcatgttaagaagtccctcaactatttgatggaaaggggttccgtgaacaagacctgagagtgttgaagctatgcacgcttga |
7288107 |
T |
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| Q |
132 |
tgctgccggtaccagactttttattttggaaaggaatcaacaaatacataatttggagacgagatagcctcgcaatatctg--agtctcattctgataca |
229 |
Q |
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| T |
7288106 |
tgctgccggtaccagacttttaattttggaaaagagtcaacaaatacagaatttggagac--gatagactcgcaatttctgaaagtctccttctgttacg |
7288009 |
T |
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| Q |
230 |
atcttttcggaagttactagcggacattcggtgggagttgtgtactaatatcaagtactcgggaagtttattgagaaccaacggttggggtatttccaat |
329 |
Q |
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| T |
7288008 |
gtctttgcggatgttaccagcggacattaattgagagtttcgtactaatagcaagtattcggg-agttaattgagaaccaacacttggtgtatctccaat |
7287910 |
T |
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| Q |
330 |
tcaatgtccaagaggaaagcagttaaaattccataacttcaa---aggaacaaatacattgcaaaacacagcatggggtgatatttcttccctaaatcta |
426 |
Q |
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| T |
7287909 |
tccatgttcaagtggaggacagttaaatttccataactttaaaagaagaataaatacatttgaaaacacagcatgggctgatatttcttccccagatgta |
7287810 |
T |
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| Q |
427 |
agtgttcacgagatgttacgcatacatgacccaaa |
461 |
Q |
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| T |
7287809 |
agtttccatgagatgttaggcatacatgacccaaa |
7287775 |
T |
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