View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4357_high_12 (Length: 238)
Name: NF4357_high_12
Description: NF4357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4357_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 7605743 - 7605518
Alignment:
| Q |
1 |
actctagtttcttttaaaacccatgacttaggtcaagagacaatgctttatggaacgacaaaatacatgtacgagaagcgacgaattcattatcaccctt |
100 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
7605743 |
actctagtttcttt-aaaactcatgacttaggtcaagagacaatgctttatggaacgacaaaatacatgtacgagaagcgacaaattcattatcgccctt |
7605645 |
T |
|
| Q |
101 |
ggacatttatctttctgctaactaattgaattctctctccccatggttttctttccacctcatgatttccgttatttccactcga----tttcgccttgt |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||| || |
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| T |
7605644 |
ggacatttatctttctgctaactaattgaattctctctccccatgtttttctttccacctcatgatttccgttatttccactcgattgcttacgcctcgt |
7605545 |
T |
|
| Q |
197 |
gctatatggcacttctgttgtcctcaa |
223 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
7605544 |
gctatatggcacttctgttgtcctcaa |
7605518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 42 - 184
Target Start/End: Complemental strand, 33904879 - 33904737
Alignment:
| Q |
42 |
aatgctttatggaacgacaaaatacatgtacgagaagcgacgaattcattatcacccttggacatttatctttctgctaactaattgaattctctctccc |
141 |
Q |
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| T |
33904879 |
aatgctttatggagcgacaaaatacatgcacgagaagcgacgaattcattaccacccttggatatttatctttctgctaactaattgaattctctctccc |
33904780 |
T |
|
| Q |
142 |
catggttttctttccacctcatgatttccgttatttccactcg |
184 |
Q |
| |
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||| ||| |||||||| | ||||||||| ||| ||| |||| |
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| T |
33904779 |
catattttcttttccaccgcttgatttccgctatctccgctcg |
33904737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 42 - 184
Target Start/End: Complemental strand, 33905070 - 33904928
Alignment:
| Q |
42 |
aatgctttatggaacgacaaaatacatgtacgagaagcgacgaattcattatcacccttggacatttatctttctgctaactaattgaattctctctccc |
141 |
Q |
| |
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|||| |||||||| |||||||||||| | | ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||| ||||| |
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| T |
33905070 |
aatgttttatggagcgacaaaatacacgcatgagaagcgacgaattcattatcacccttgaatatttatctttctgctaactaattgaatactcactccc |
33904971 |
T |
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| Q |
142 |
catggttttctttccacctcatgatttccgttatttccactcg |
184 |
Q |
| |
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|||| ||| ||||||||| | ||||||||| ||| ||| |||| |
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| T |
33904970 |
catgttttcctttccaccgcttgatttccgctatctccgctcg |
33904928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 42 - 169
Target Start/End: Complemental strand, 50470465 - 50470339
Alignment:
| Q |
42 |
aatgctttatggaacgacaaaatacatgtacgagaagcgacgaattcattatcacccttggacatttatctttctgctaactaattgaattctctctccc |
141 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||| |||| || | ||||| ||||| |||| | ||||||||||||||||||||||| |
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| T |
50470465 |
aatgctttatggaacgacaaaa-acatgcacgagaagcgacgaaactattaccatctttggatgtttatatttccgttaactaattgaattctctctccc |
50470367 |
T |
|
| Q |
142 |
catggttttctttccacctcatgatttc |
169 |
Q |
| |
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|||| ||| ||||||| | ||||||||| |
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|
| T |
50470366 |
catgttttcctttccatcccatgatttc |
50470339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 19591264 - 19591149
Alignment:
| Q |
42 |
aatgctttatggaacgacaaaatacatgtacgagaagcgacgaattcattatcacccttggacatttatctttctgctaactaattgaattctctctccc |
141 |
Q |
| |
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|||||||||||| |||||| |||||||||||||| ||||||| |||| |||||| ||| ||||||| | |||||||||| |||||||||||| |
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| T |
19591264 |
aatgctttatggtacgacagtatacatgtacgagatttgacgaatcaattaccaccctaggatctttatctatgcattaactaattggattctctctccc |
19591165 |
T |
|
| Q |
142 |
catggttttctttcca |
157 |
Q |
| |
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|||| ||| ||||||| |
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| T |
19591164 |
catgttttgctttcca |
19591149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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