View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4357_high_13 (Length: 208)
Name: NF4357_high_13
Description: NF4357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4357_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 31241341 - 31241509
Alignment:
| Q |
16 |
ataattctaataagatgggttacaagtaggtgcatgttcttaatcaaatttatctagttaagaaatttatttctaatcttcgagaggaccttgatagtct |
115 |
Q |
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| T |
31241341 |
ataattctaataagatgggttacaagtaggtgcatgttcttaatcaaacttatctagttaagaaatttatttctaatcttcgagaggaccttgatagtcc |
31241440 |
T |
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| Q |
116 |
tgttgaaagctagggtgaccagaattgttgatagaataaaacattattaaggaaaataaataagcaatg |
184 |
Q |
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| T |
31241441 |
tgttgaaagctagggtgaccagaattgttgatagaataaaatattattaaggaaaataaataagcaatg |
31241509 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 136
Target Start/End: Complemental strand, 39689449 - 39689347
Alignment:
| Q |
34 |
gttacaagtaggtgcatgttcttaatcaaatttatctagttaagaaatttatttctaatcttcgagaggaccttgatagtcttgttgaaagctagggtga |
133 |
Q |
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||||||| ||| ||||||||||||| |||||||| ||||||| || | || ||||||| |||| ||||| | ||| ||||||||||||||| |||| |
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| T |
39689449 |
gttacaattagatgcatgttcttaaacaaatttaaacagttaagccatctgttcctaatctgcgaggggaccagggtagccttgttgaaagctagcgtga |
39689350 |
T |
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| Q |
134 |
cca |
136 |
Q |
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||| |
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| T |
39689349 |
cca |
39689347 |
T |
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