View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4357_high_9 (Length: 269)
Name: NF4357_high_9
Description: NF4357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4357_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 56229956 - 56229718
Alignment:
| Q |
13 |
aatattaagtatctattttatttta-gaaatttgacctagtatatgtgtgcaaaataacaaagtcataataatatagttaaaagttaacaatggtagata |
111 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56229956 |
aatattaattatctattttattttatgaaatttgacgtagtatatgtgtgcaaaataacaaagtcataataatatagttaaaagttaacaatggtagata |
56229857 |
T |
|
| Q |
112 |
caagaagaagaaagnnnnnnnnnntgataaaattttaccagtgtcaaggttcccaataataacatcttcaccgtatctagcttttgtaaggagggaatga |
211 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56229856 |
caagaagaagaa---gaaaaaaaatgataaaattttaccagtgtcaaggttcccaataataacatcttcaccgtatctagcttttgtaaggagggaatga |
56229760 |
T |
|
| Q |
212 |
gaaggagccacaccattgtgttccagtgacataaattcccat |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56229759 |
gaaggagccacaccattgtgttccagtgacataaattcccat |
56229718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 146 - 253
Target Start/End: Complemental strand, 39187207 - 39187100
Alignment:
| Q |
146 |
ttaccagtgtcaaggttcccaataataacatcttcaccgtatctagcttttgtaaggagggaatgagaaggagccacaccattgtgttccagtgacataa |
245 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
39187207 |
ttaccagaatcaagattcccaataataacatcttcaccgtatcttgcttttctaaagagggaatgagaaggagccacaccattgtgttccattgacatga |
39187108 |
T |
|
| Q |
246 |
attcccat |
253 |
Q |
| |
|
|||||||| |
|
|
| T |
39187107 |
attcccat |
39187100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University