View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4357_low_2 (Length: 421)

Name: NF4357_low_2
Description: NF4357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4357_low_2
NF4357_low_2
[»] chr3 (9 HSPs)
chr3 (1-412)||(53509213-53509630)
chr3 (1-83)||(53513081-53513163)
chr3 (1-99)||(53523725-53523823)
chr3 (286-400)||(44290992-44291105)
chr3 (1-83)||(53547253-53547335)
chr3 (312-396)||(44291423-44291508)
chr3 (371-402)||(33291632-33291663)
chr3 (371-410)||(46476842-46476881)
chr3 (283-412)||(48200338-48200468)
[»] chr1 (6 HSPs)
chr1 (282-402)||(12656342-12656461)
chr1 (276-357)||(25112511-25112592)
chr1 (276-335)||(620594-620653)
chr1 (311-400)||(802260-802350)
chr1 (297-397)||(16026107-16026208)
chr1 (311-396)||(16554304-16554390)
[»] chr2 (9 HSPs)
chr2 (279-412)||(8198623-8198756)
chr2 (279-412)||(8203383-8203516)
chr2 (279-398)||(4558889-4559009)
chr2 (276-396)||(13323837-13323961)
chr2 (343-400)||(8198415-8198473)
chr2 (343-400)||(8203175-8203233)
chr2 (371-400)||(45385853-45385882)
chr2 (371-412)||(45385920-45385961)
chr2 (349-397)||(34901922-34901970)
[»] chr5 (9 HSPs)
chr5 (16-100)||(16609984-16610068)
chr5 (312-397)||(30384212-30384297)
chr5 (370-406)||(2143087-2143123)
chr5 (309-357)||(42474903-42474951)
chr5 (283-398)||(13953504-13953618)
chr5 (311-397)||(29532056-29532142)
chr5 (283-337)||(4689128-4689182)
chr5 (312-396)||(4689303-4689388)
chr5 (312-396)||(38458815-38458898)
[»] chr8 (5 HSPs)
chr8 (305-398)||(2277203-2277297)
chr8 (322-404)||(15907700-15907782)
chr8 (318-396)||(12190014-12190091)
chr8 (318-396)||(12434442-12434519)
chr8 (297-357)||(37064684-37064744)
[»] chr7 (9 HSPs)
chr7 (311-399)||(5755591-5755678)
chr7 (276-351)||(32857952-32858027)
chr7 (297-398)||(28003336-28003436)
chr7 (279-339)||(21921027-21921087)
chr7 (282-357)||(18128498-18128573)
chr7 (282-357)||(20389685-20389759)
chr7 (276-402)||(32804595-32804721)
chr7 (276-402)||(41331299-41331426)
chr7 (343-396)||(12264769-12264822)
[»] chr4 (9 HSPs)
chr4 (276-397)||(22519781-22519904)
chr4 (276-396)||(22889586-22889707)
chr4 (276-396)||(22941250-22941371)
chr4 (276-397)||(31095256-31095378)
chr4 (283-337)||(2803346-2803400)
chr4 (276-357)||(20141786-20141866)
chr4 (279-344)||(48194425-48194490)
chr4 (229-257)||(33278748-33278776)
chr4 (312-396)||(34717576-34717659)
[»] chr6 (7 HSPs)
chr6 (284-404)||(16419589-16419712)
chr6 (297-407)||(33547739-33547851)
chr6 (315-397)||(7533472-7533554)
chr6 (374-412)||(12458463-12458501)
chr6 (286-357)||(11324048-11324119)
chr6 (298-396)||(10544278-10544375)
chr6 (318-400)||(33547807-33547889)
[»] scaffold0591 (1 HSPs)
scaffold0591 (276-404)||(3863-3990)


Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 53509630 - 53509213
Alignment:
Q  1 agttatttaatttttctttgctttcaggcggtagtccagtaattagaggaaataaatgggcttcaactaagttgctgcatcttacggagttccaagtttt 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  53509630 agttatttaatttttctttgctttcaggcggtagtccggtaattagaggaaataaatgggcttcaactaagtggctgcatcttacggagttcaaagtttt 53509531  T
Q  101 gggcacggcacttccaggtactttttaagttataacaagctagttttagatttaattgtaacaaacttgtattttaaatattaacactcaggtattttaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53509530 gggcacggcacttccaggtactttttaagttataacaagctagttttagatttaattgtaacaaacttgtattttaaatattaacactcaggtattttaa 53509431  T
Q  201 c------nnnnnnnaattgaaacttttagctccaaataacttacatttttaaaatttaaaatcatcaaagtgttatagttgaatgacctaattggtacgg 294  Q
    |             |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     
T  53509430 cttttaagttatttaattgaaacttttagctccaaataacttacatttttaagatttaaaatcatcaaagtgttatagttgaatgacctaattggtacga 53509331  T
Q  295 agaaaacttaaaaaatcaacttcttacaattaattaacttaaagaatttaagtggtacgaaaacaatttgaagataaatttgttacaattaaataactta 394  Q
    | |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||| ||||||||||||||    
T  53509330 aaaaaacttaaaaaatcaactttttacaattaattaacttaaagaatttaattggtacgaaaataatttgaagacaaatttgttataattaaataactta 53509231  T
Q  395 aaggacttctagtataat 412  Q
    ||||| ||||||||||||    
T  53509230 aaggagttctagtataat 53509213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 53513163 - 53513081
Alignment:
Q  1 agttatttaatttttctttgctttcaggcggtagtccagtaattagaggaaataaatgggcttcaactaagttgctgcatctt 83  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  53513163 agttatttaattaatctttgctttcaggcggtagtccagtaattagaggaaataaatgggcttcaactaagtggctgcatctt 53513081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 53523823 - 53523725
Alignment:
Q  1 agttatttaatttttctttgctttcaggcggtagtccagtaattagaggaaataaatgggcttcaactaagttgctgcatcttacggagttccaagttt 99  Q
    ||||| ||||||| |||||||||||||| ||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||    
T  53523823 agttaattaatttatctttgctttcaggtggtagcccagtaattagaggaagtaaatgggcttcaaataagttgctgcatcttacggagttcaaagttt 53523725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 286 - 400
Target Start/End: Complemental strand, 44291105 - 44290992
Alignment:
Q  286 ttggtacggagaaaacttaaaaaatcaacttcttacaattaattaacttaaagaatttaagtggtacgaaaacaatttgaagataaatttgttacaatta 385  Q
    |||||||||| |||||||||||   |||||| |||||| |||||||||||||  | |||||||||||||||| || || || | || |||||||||||||    
T  44291105 ttggtacggaaaaaacttaaaaggccaacttgttacaactaattaacttaaatgacttaagtggtacgaaaaaaactt-aaaaaaattttgttacaatta 44291007  T
Q  386 aataacttaaaggac 400  Q
    |||||||||||||||    
T  44291006 aataacttaaaggac 44290992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 53547335 - 53547253
Alignment:
Q  1 agttatttaatttttctttgctttcaggcggtagtccagtaattagaggaaataaatgggcttcaactaagttgctgcatctt 83  Q
    ||||| ||||||| |||||||||||||||||| | || ||||||  ||||||||||||| ||||||| |||| | ||||||||    
T  53547335 agttaattaatttatctttgctttcaggcggttgccccgtaattgtaggaaataaatggtcttcaacaaagtggatgcatctt 53547253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 396
Target Start/End: Original strand, 44291423 - 44291508
Alignment:
Q  312 aacttcttacaattaattaacttaaagaatttaagtggtacgaaaacaattt-gaagataaatttgttacaattaaataacttaaa 396  Q
    ||||| |||||||||| |||||||||| |  |||||| ||| |||| ||||| || ||  ||||||||||||||||||||||||||    
T  44291423 aacttgttacaattaaataacttaaaggacataagtgatactaaaaaaatttagaggaccaatttgttacaattaaataacttaaa 44291508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 371 - 402
Target Start/End: Original strand, 33291632 - 33291663
Alignment:
Q  371 aatttgttacaattaaataacttaaaggactt 402  Q
    ||||||||||||||||||||||||||||||||    
T  33291632 aatttgttacaattaaataacttaaaggactt 33291663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 371 - 410
Target Start/End: Complemental strand, 46476881 - 46476842
Alignment:
Q  371 aatttgttacaattaaataacttaaaggacttctagtata 410  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  46476881 aatttgttacaattaaataacttaaaggatctctagtata 46476842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 412
Target Start/End: Original strand, 48200338 - 48200468
Alignment:
Q  283 taattggtacggagaaaacttaaaaaatcaacttcttacaattaattaacttaaagaatttaagtggtacgaaaacaatttgaa-gataaatttgttaca 381  Q
    |||||||||| || | || ||||||||  ||||| ||||||| |||||| |||||  | ||||| |||||||||| || || || ||| ||||  |||||    
T  48200338 taattggtacagaaagaatttaaaaaactaacttattacaatcaattaatttaaaagacttaagcggtacgaaaaaaaattaaatgatcaattctttaca 48200437  T
Q  382 attaaataacttaaaggacttctagtataat 412  Q
    ||||||||| ||||| || ||||||| ||||    
T  48200438 attaaataagttaaaagatttctagtgtaat 48200468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 282 - 402
Target Start/End: Original strand, 12656342 - 12656461
Alignment:
Q  282 ctaattggtacggagaaaacttaaaaaatcaacttcttacaattaattaacttaaagaatttaagtggtacgaaaacaatttgaagataaatttgttaca 381  Q
    |||||||||||||| ||||||||||||  |||||| |||||||||||||||||||||  ||||||||||||||||| | ||  || || ||| |||||||    
T  12656342 ctaattggtacggaaaaaacttaaaaac-caacttattacaattaattaacttaaagggtttaagtggtacgaaaaaatttaaaaaatcaatatgttaca 12656440  T
Q  382 attaaataacttaaaggactt 402  Q
    |||||||||||||||||||||    
T  12656441 attaaataacttaaaggactt 12656461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 276 - 357
Target Start/End: Complemental strand, 25112592 - 25112511
Alignment:
Q  276 aatgacctaattggtacggagaaaacttaaaaaatcaacttcttacaattaattaacttaaagaatttaagtggtacgaaaa 357  Q
    |||||| ||||||||||||| |||| |||||  |||||||| ||||||||||||| |||||| || |||||||||| |||||    
T  25112592 aatgacttaattggtacggaaaaaatttaaaggatcaacttattacaattaattagcttaaataacttaagtggtatgaaaa 25112511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 335
Target Start/End: Complemental strand, 620653 - 620594
Alignment:
Q  276 aatgacctaattggtacggagaaaacttaaaaaatcaacttcttacaattaattaactta 335  Q
    ||||||||||||| |||||| ||||||| ||| || ||||| ||||||||||||||||||    
T  620653 aatgacctaattgatacggaaaaaactttaaagattaacttgttacaattaattaactta 620594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 400
Target Start/End: Original strand, 802260 - 802350
Alignment:
Q  311 caacttcttacaattaattaacttaaagaatttaagtggtacgaaaacaatttgaa-gataaatttgttacaattaaataacttaaaggac 400  Q
    |||||| |||||||||||||| | |||| || ||||||||||||||| | ||| || ||  ||||| ||||| ||||||||||||||||||    
T  802260 caacttgttacaattaattaattcaaaggatataagtggtacgaaaaaagtttaaaggaccaatttattacatttaaataacttaaaggac 802350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 397
Target Start/End: Complemental strand, 16026208 - 16026107
Alignment:
Q  297 aaaacttaaaaaatcaacttcttacaattaattaacttaaagaatttaagtggtacgaaaacaatttgaa-gataaatttgttacaattaaataacttaa 395  Q
    ||||||||| | |||||||| ||||| |||| |||||||||| |  |||| |||||||||| ||| | || ||| || || |||||||||||||||||||    
T  16026208 aaaacttaacagatcaacttattacagttaaataacttaaaggacctaagaggtacgaaaaaaatgtaaatgattaacttattacaattaaataacttaa 16026109  T
Q  396 ag 397  Q
    ||    
T  16026108 ag 16026107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 396
Target Start/End: Complemental strand, 16554390 - 16554304
Alignment:
Q  311 caacttcttacaattaattaacttaaagaatttaagtggtacgaaaacaatttgaa-gataaatttgttacaattaaataacttaaa 396  Q
    |||||| |||||||| |||||||||||  | ||||||||||| |||| || || || ||  ||||| ||||||||||||||||||||    
T  16554390 caacttgttacaattgattaacttaaatgacttaagtggtaccaaaaaaacttaaaggaccaatttattacaattaaataacttaaa 16554304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 279 - 412
Target Start/End: Original strand, 8198623 - 8198756
Alignment:
Q  279 gacctaattggtacggagaaaacttaaaaaatcaacttcttacaattaattaacttaaagaatttaagtggtacgaaaacaatttgaagataaatttgtt 378  Q
    ||||||||||||||||| ||||||||||    |||||| ||||||||||||| ||||||| |  ||||||||||| ||| || || ||||  ||||||||    
T  8198623 gacctaattggtacggaaaaaacttaaagggccaacttattacaattaattatcttaaaggacctaagtggtacggaaaaaacttaaagaccaatttgtt 8198722  T
Q  379 acaattaaataacttaaaggacttctagtataat 412  Q
    |||||||| |||||||||||| |||| |||||||    
T  8198723 acaattaactaacttaaaggatttctggtataat 8198756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 279 - 412
Target Start/End: Original strand, 8203383 - 8203516
Alignment:
Q  279 gacctaattggtacggagaaaacttaaaaaatcaacttcttacaattaattaacttaaagaatttaagtggtacgaaaacaatttgaagataaatttgtt 378  Q
    ||||||||||||||||| ||||||||||    |||||| ||||||||||||| ||||||| |  ||||||||||| ||| || || ||||  ||||||||    
T  8203383 gacctaattggtacggaaaaaacttaaagggccaacttattacaattaattatcttaaaggacctaagtggtacggaaaaaacttaaagaccaatttgtt 8203482  T
Q  379 acaattaaataacttaaaggacttctagtataat 412  Q
    |||||||| |||||||||||| |||| |||||||    
T  8203483 acaattaactaacttaaaggatttctggtataat 8203516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 398
Target Start/End: Original strand, 4558889 - 4559009
Alignment:
Q  279 gacctaattggtacggagaaaacttaaaaaatcaacttcttacaattaattaacttaaagaatttaagtggta-cgaaaacaatttgaagataaatttgt 377  Q
    |||||||||||||| || ||||||||||  | |||||| ||||||||||||||| ||||| |  ||||| ||| | |||| || || ||||| ||||| |    
T  4558889 gacctaattggtacagacaaaacttaaaggaacaacttgttacaattaattaacataaagtacctaagttgtaccaaaaaaaacttaaagatcaatttat 4558988  T
Q  378 tacaattaaataacttaaagg 398  Q
    |||||||||||||||||||||    
T  4558989 tacaattaaataacttaaagg 4559009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 276 - 396
Target Start/End: Original strand, 13323837 - 13323961
Alignment:
Q  276 aatgacctaattggtacggagaaaacttaaaaaatcaacttcttacaattaattaacttaaagaatttaagtggtacg--aaaacaatttgaaga--taa 371  Q
    ||||||||||||| |||||| ||| | | ||| |||||||| ||||||||||||||||| |||||  |||||||||||  |||| || || || |  | |    
T  13323837 aatgacctaattgatacggaaaaagcatcaaagatcaacttattacaattaattaactttaagaagctaagtggtacggaaaaaaaaattaaaaaagtta 13323936  T
Q  372 atttgttacaattaaataacttaaa 396  Q
    |||| ||||||||||||||||||||    
T  13323937 atttattacaattaaataacttaaa 13323961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 400
Target Start/End: Complemental strand, 8198473 - 8198415
Alignment:
Q  343 taagtggtacgaaaacaatttgaagata-aatttgttacaattaaataacttaaaggac 400  Q
    ||||||||||||||| ||||| ||||   ||||| ||||||||||||||||||||||||    
T  8198473 taagtggtacgaaaaaaatttaaagaaccaatttattacaattaaataacttaaaggac 8198415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 400
Target Start/End: Complemental strand, 8203233 - 8203175
Alignment:
Q  343 taagtggtacgaaaacaatttgaagata-aatttgttacaattaaataacttaaaggac 400  Q
    ||||||||||||||| ||||| ||||   ||||| ||||||||||||||||||||||||    
T  8203233 taagtggtacgaaaaaaatttaaagaaccaatttattacaattaaataacttaaaggac 8203175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 400
Target Start/End: Complemental strand, 45385882 - 45385853
Alignment:
Q  371 aatttgttacaattaaataacttaaaggac 400  Q
    ||||||||||||||||||||||||||||||    
T  45385882 aatttgttacaattaaataacttaaaggac 45385853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 45385920 - 45385961
Alignment:
Q  371 aatttgttacaattaaataacttaaaggacttctagtataat 412  Q
    |||||||| ||||||||||||||||||||| |||||| ||||    
T  45385920 aatttgttccaattaaataacttaaaggacctctagtgtaat 45385961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 397
Target Start/End: Complemental strand, 34901970 - 34901922
Alignment:
Q  349 gtacgaaaacaatttgaagataaatttgttacaattaaataacttaaag 397  Q
    |||| |||| ||||| ||||| ||||| |||||||||||||||||||||    
T  34901970 gtacaaaaaaaatttaaagatcaatttattacaattaaataacttaaag 34901922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 16609984 - 16610068
Alignment:
Q  16 ctttgctttcaggcggtagtccagtaattagaggaaataaatgggcttcaactaagttgctgcatcttacggagttccaagtttt 100  Q
    ||||||||||||||||||| | |||||||| | |||||||||||||||||||||||||||||||||||| ||| ||| |||||||    
T  16609984 ctttgctttcaggcggtagcctagtaattaaacgaaataaatgggcttcaactaagttgctgcatcttaaggaattcaaagtttt 16610068  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 397
Target Start/End: Complemental strand, 30384297 - 30384212
Alignment:
Q  312 aacttcttacaattaattaacttaaagaatttaagtggtacgaaaacaatttgaagataaatttgttacaattaaataacttaaag 397  Q
    ||||| |||||||||| |||||||||  |  |||||  |||||||| | ||  |||| ||||||||||||||||||||||||||||    
T  30384297 aacttgttacaattaaataacttaaaagacgtaagtaatacgaaaaaacttaaaagacaaatttgttacaattaaataacttaaag 30384212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 2143123 - 2143087
Alignment:
Q  370 aaatttgttacaattaaataacttaaaggacttctag 406  Q
    ||||||||||||||||||||||||||| |||||||||    
T  2143123 aaatttgttacaattaaataacttaaaagacttctag 2143087  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 42474951 - 42474903
Alignment:
Q  309 atcaacttcttacaattaattaacttaaagaatttaagtggtacgaaaa 357  Q
    |||||||| ||||||||||||||||||||  ||||||||||||| ||||    
T  42474951 atcaacttattacaattaattaacttaaaagatttaagtggtacaaaaa 42474903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 398
Target Start/End: Original strand, 13953504 - 13953618
Alignment:
Q  283 taattggtacggagaaaacttaaaaaatcaacttcttacaattaattaacttaaagaatttaagtggtacgaaaacaatttgaagataaatttgttacaa 382  Q
    ||||||||||||| ||||||||||| |  ||||| ||||||||||||||||||||  | ||||| |||| ||||| | ||  || |  ||||| ||| ||    
T  13953504 taattggtacgga-aaaacttaaaagacaaacttgttacaattaattaacttaaatgacttaagcggtatgaaaaaacttaaaaaaccaatttattataa 13953602  T
Q  383 ttaaataacttaaagg 398  Q
    ||||| ||||||||||    
T  13953603 ttaaacaacttaaagg 13953618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 397
Target Start/End: Original strand, 29532056 - 29532142
Alignment:
Q  311 caacttcttacaattaattaacttaaagaatttaagtggtacgaaaacaatttgaagata-aatttgttacaattaaataacttaaag 397  Q
    |||||| ||||| ||||||||| |||||||  |||||| |||||||| ||||| ||| |  |||||||||||||| ||||||||||||    
T  29532056 caactttttacagttaattaacataaagaagctaagtgatacgaaaa-aatttaaaggttcaatttgttacaattgaataacttaaag 29532142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 337
Target Start/End: Complemental strand, 4689182 - 4689128
Alignment:
Q  283 taattggtacggagaaaacttaaaaaatcaacttcttacaattaattaacttaaa 337  Q
    ||||| |||| || ||||||||||||| |||||| | ||||||||||||||||||    
T  4689182 taatttgtacagaaaaaacttaaaaaaccaacttatcacaattaattaacttaaa 4689128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 396
Target Start/End: Original strand, 4689303 - 4689388
Alignment:
Q  312 aacttcttacaattaattaacttaaa-gaatttaagtggtacgaaaacaatttgaagataaatttgttacaattaaataacttaaa 396  Q
    ||||| |||||||||| ||||||||| | |  ||| ||||||||||| ||||| ||||   |||| ||||||||||||||||||||    
T  4689303 aacttgttacaattaaataacttaaaaggacataaatggtacgaaaaaaatttaaagacgtatttattacaattaaataacttaaa 4689388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 396
Target Start/End: Original strand, 38458815 - 38458898
Alignment:
Q  312 aacttcttacaattaattaacttaaagaatttaagtggtacgaaaacaatttgaagataaatttgttacaattaaataacttaaa 396  Q
    ||||| ||||||| || |||||||||  || ||||||||||||||| || || || |  ||||| ||||||||||||||||||||    
T  38458815 aacttattacaataaaataacttaaaagatataagtggtacgaaaaaaactt-aaaactaatttattacaattaaataacttaaa 38458898  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 305 - 398
Target Start/End: Original strand, 2277203 - 2277297
Alignment:
Q  305 aaaaatcaacttcttacaattaattaacttaaagaatttaagtggtacgaaaacaatttgaa-gataaatttgttacaattaaataacttaaagg 398  Q
    |||||||||||| ||||||||||||||||||||| |  |||||||||| |||| || || || ||| ||||||||||||||||||||||||||||    
T  2277203 aaaaatcaacttgttacaattaattaacttaaaggacctaagtggtacaaaaaaaacttaaaggatcaatttgttacaattaaataacttaaagg 2277297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 322 - 404
Target Start/End: Complemental strand, 15907782 - 15907700
Alignment:
Q  322 aattaattaacttaaagaatttaagtggtacgaaaacaatttgaagataaatttgttacaattaaataacttaaaggacttct 404  Q
    |||||||||||||||||||| ||||||||||||||| || || ||||  ||||| | |||| |||||||||||||||| ||||    
T  15907782 aattaattaacttaaagaatataagtggtacgaaaaaaacttaaagaccaatttatcacaagtaaataacttaaaggatttct 15907700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 396
Target Start/End: Original strand, 12190014 - 12190091
Alignment:
Q  318 ttacaattaattaacttaaagaatttaagtggtacgaaaacaatttgaagataaatttgttacaattaaataacttaaa 396  Q
    ||||||| |||||||||||||| | |||| | |||||||| ||  | || | |||||||||||||||||||||||||||    
T  12190014 ttacaatcaattaacttaaaga-tctaagcgatacgaaaaaaaacttaaaacaaatttgttacaattaaataacttaaa 12190091  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 396
Target Start/End: Original strand, 12434442 - 12434519
Alignment:
Q  318 ttacaattaattaacttaaagaatttaagtggtacgaaaacaatttgaagataaatttgttacaattaaataacttaaa 396  Q
    ||||||| |||||||||||||| | |||| | |||||||| ||  | || | |||||||||||||||||||||||||||    
T  12434442 ttacaatcaattaacttaaaga-tctaagcgatacgaaaaaaaacttaaaacaaatttgttacaattaaataacttaaa 12434519  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 357
Target Start/End: Original strand, 37064684 - 37064744
Alignment:
Q  297 aaaacttaaaaaatcaacttcttacaattaattaacttaaagaatttaagtggtacgaaaa 357  Q
    ||||||||||  | |||||| ||| ||||||||||||||||| | ||||||||| ||||||    
T  37064684 aaaacttaaaggaccaacttgttataattaattaacttaaaggacttaagtggtgcgaaaa 37064744  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 399
Target Start/End: Complemental strand, 5755678 - 5755591
Alignment:
Q  311 caacttcttacaattaattaacttaaagaatttaagtggtacgaaaacaatttgaagataaatttgttacaattaaataacttaaagga 399  Q
    |||||| ||||||||||||||| ||||  |||||||||||||||||| ||||  | |   |||||||||||||||||||||||||||||    
T  5755678 caacttgttacaattaattaacataaatgatttaagtggtacgaaaa-aattaaagggccaatttgttacaattaaataacttaaagga 5755591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 276 - 351
Target Start/End: Original strand, 32857952 - 32858027
Alignment:
Q  276 aatgacctaattggtacggagaaaacttaaaaaatcaacttcttacaattaattaacttaaagaatttaagtggta 351  Q
    |||||||||||| |||| || |||| ||||| || |||||| ||||||||||||||||||||  ||||||||||||    
T  32857952 aatgacctaattagtactgaaaaaatttaaagaaccaacttattacaattaattaacttaaaagatttaagtggta 32858027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 398
Target Start/End: Original strand, 28003336 - 28003436
Alignment:
Q  297 aaaacttaaaaaatcaacttcttacaattaattaacttaaagaatttaagtggtacgaaaacaatttgaagataaatttgttacaattaaataacttaaa 396  Q
    ||||||||||  |||||||| ||||| ||||||||||||||| |  ||| ||||||||||| || || | ||| || ||||||||||||||||| |||||    
T  28003336 aaaacttaaaggatcaacttgttacatttaattaacttaaaggacctaattggtacgaaaa-aacttaacgatcaacttgttacaattaaataatttaaa 28003434  T
Q  397 gg 398  Q
    ||    
T  28003435 gg 28003436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 21921027 - 21921087
Alignment:
Q  279 gacctaattggtacggagaaaacttaaaaaatcaacttcttacaattaattaacttaaaga 339  Q
    ||||||||| ||||||| |||||||||| || |||||| ||||| ||||||||||||||||    
T  21921027 gacctaattagtacggaaaaaacttaaataaacaacttgttacagttaattaacttaaaga 21921087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 357
Target Start/End: Original strand, 18128498 - 18128573
Alignment:
Q  282 ctaattggtacggagaaaacttaaaaaatcaacttcttacaattaattaacttaaagaatttaagtggtacgaaaa 357  Q
    |||||| ||||| | |||| |||||  | |||||| |||||||||||||||||||||||  ||||| |||||||||    
T  18128498 ctaattcgtacgaaaaaaaattaaagcaccaacttattacaattaattaacttaaagaacctaagtagtacgaaaa 18128573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 357
Target Start/End: Complemental strand, 20389759 - 20389685
Alignment:
Q  282 ctaattggtacggagaaaacttaaaaaatcaacttcttacaattaattaacttaaagaatttaagtggtacgaaaa 357  Q
    |||||| ||||| | |||||||||| |  |||||| ||||||||||||||||||||| || ||||| |||||||||    
T  20389759 ctaattcgtacgaaaaaaacttaaagac-caacttgttacaattaattaacttaaagcatctaagtagtacgaaaa 20389685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 402
Target Start/End: Original strand, 32804595 - 32804721
Alignment:
Q  276 aatgacctaattggtacggagaaaacttaaaaaatcaacttcttacaattaattaacttaaagaatttaagtggtacgaaaacaa-tttgaagataaatt 374  Q
    |||||||||||||  ||| | ||||||||||||| |||||| || |||||||||||||||||  | |||||| ||| ||||| ||  |  ||||| ||||    
T  32804595 aatgacctaattgaaacgaaaaaaacttaaaaaa-caacttgttgcaattaattaacttaaatgacttaagttgtatgaaaaaaacctaaaagatcaatt 32804693  T
Q  375 tgttacaattaaataacttaaaggactt 402  Q
    | ||||||||||||| | |||| |||||    
T  32804694 tattacaattaaatatcctaaaagactt 32804721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 402
Target Start/End: Original strand, 41331299 - 41331426
Alignment:
Q  276 aatgacctaattggtacggagaaaacttaaaaaatcaacttcttacaattaattaacttaaagaatttaagtggtacgaaaacaatttgaa-gataaatt 374  Q
    |||||||| ||||||||    |||||||||| || |||||| ||| |||| |||||||||||  |  || ||||||||| || || || || ||| ||||    
T  41331299 aatgacctcattggtacatgaaaaacttaaagaaccaacttgttataatttattaacttaaatgagctaggtggtacgagaaaaacttaaatgatcaatt 41331398  T
Q  375 tgttacaattaaataacttaaaggactt 402  Q
    | |||||||||||||||||||| |||||    
T  41331399 tattacaattaaataacttaaatgactt 41331426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 396
Target Start/End: Complemental strand, 12264822 - 12264769
Alignment:
Q  343 taagtggtacgaaaacaatttgaagataaatttgttacaattaaataacttaaa 396  Q
    |||||||||||||||  | || |||||||| ||||||||||||| |||||||||    
T  12264822 taagtggtacgaaaaatacttaaagataaacttgttacaattaattaacttaaa 12264769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 397
Target Start/End: Original strand, 22519781 - 22519904
Alignment:
Q  276 aatgacctaattggtacggagaaaacttaaaaaatcaacttcttacaattaattaacttaaagaatttaagtggtacg--aaaacaatttgaagataaat 373  Q
    ||||||||||||| ||| || ||||||||||  |||||||| ||| ||||||||||||||||  |  |||||||||||  |||| | ||| | ||  |||    
T  22519781 aatgacctaattgatacagaaaaaacttaaaggatcaacttgttataattaattaacttaaaagacctaagtggtacggaaaaaaactttaaggaccaat 22519880  T
Q  374 ttgttacaattaaataacttaaag 397  Q
    ||||||||||||||||| ||||||    
T  22519881 ttgttacaattaaataatttaaag 22519904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 396
Target Start/End: Complemental strand, 22889707 - 22889586
Alignment:
Q  276 aatgacctaattggtacggagaaaacttaaaaaatcaacttcttacaattaattaacttaaagaatttaagtggtacgaaaacaa-tttgaagataaatt 374  Q
    |||||| ||||||||||||| |||| ||||  || |||||| |||||||| |||||||||||| ||  ||| ||||| |||| || ||| | ||  ||||    
T  22889707 aatgacttaattggtacggaaaaaatttaatgaaccaacttgttacaatttattaacttaaaggatcaaagcggtacaaaaaaaactttaaggaccaatt 22889608  T
Q  375 tgttacaattaaataacttaaa 396  Q
    | ||| ||||||||||||||||    
T  22889607 tattataattaaataacttaaa 22889586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 396
Target Start/End: Complemental strand, 22941371 - 22941250
Alignment:
Q  276 aatgacctaattggtacggagaaaacttaaaaaatcaacttcttacaattaattaacttaaagaatttaagtggtacgaaaacaa-tttgaagataaatt 374  Q
    |||||| ||||||||||||| |||| ||||  || |||||| |||||||| |||||||||||| ||  ||| ||||| |||| || ||| | ||  ||||    
T  22941371 aatgacttaattggtacggaaaaaatttaatgaaccaacttgttacaatttattaacttaaaggatcaaagcggtacaaaaaaaactttaaggaccaatt 22941272  T
Q  375 tgttacaattaaataacttaaa 396  Q
    | ||| ||||||||||||||||    
T  22941271 tattataattaaataacttaaa 22941250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 397
Target Start/End: Original strand, 31095256 - 31095378
Alignment:
Q  276 aatgacctaattggtacggagaaaacttaaaaaatcaacttcttacaattaattaacttaaagaatttaagtggtacgaaaacaatttgaa--gataaat 373  Q
    |||||||| ||||||| ||| |||||||| |  || ||||| |||||| |||||||||||||  |  ||| ||||||||||| ||||| |   || ||||    
T  31095256 aatgaccttattggta-ggaaaaaacttataggattaacttgttacaactaattaacttaaaagacctaaatggtacgaaaataatttaagtggacaaat 31095354  T
Q  374 ttgttacaattaaataacttaaag 397  Q
    || |||||||||||||||||||||    
T  31095355 ttattacaattaaataacttaaag 31095378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 337
Target Start/End: Original strand, 2803346 - 2803400
Alignment:
Q  283 taattggtacggagaaaacttaaaaaatcaacttcttacaattaattaacttaaa 337  Q
    |||||| |||||| ||||| ||||| |||||||| || |||||||||||||||||    
T  2803346 taattgatacggaaaaaacgtaaaagatcaacttatttcaattaattaacttaaa 2803400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 357
Target Start/End: Complemental strand, 20141866 - 20141786
Alignment:
Q  276 aatgacctaattggtacggagaaaacttaaaaaatcaacttcttacaattaattaacttaaagaatttaagtggtacgaaaa 357  Q
    |||||||||||| ||||| | |||||||||| |  |||||| ||||||||||||||| |||||||  |||||| ||| ||||    
T  20141866 aatgacctaattagtacgaataaaacttaaagac-caacttgttacaattaattaacataaagaacctaagtgatacaaaaa 20141786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 48194425 - 48194490
Alignment:
Q  279 gacctaattggtacggagaaaacttaaaaaatcaacttcttacaattaattaacttaaagaattta 344  Q
    |||||||  |||||| | ||||| ||||  |||||||| |||||||||| ||||||||||||||||    
T  48194425 gacctaagaggtacgaaaaaaacgtaaatgatcaacttattacaattaaataacttaaagaattta 48194490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 257
Target Start/End: Complemental strand, 33278776 - 33278748
Alignment:
Q  229 aataacttacatttttaaaatttaaaatc 257  Q
    |||||||||||||||||||||||||||||    
T  33278776 aataacttacatttttaaaatttaaaatc 33278748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 396
Target Start/End: Original strand, 34717576 - 34717659
Alignment:
Q  312 aacttcttacaattaattaacttaaagaatttaagtggtacgaaaacaatttgaagataaatttgttacaattaaataacttaaa 396  Q
    ||||| || |||||||||||||||||  | ||| ||| |||||||| || || || | |||||| ||||||||||||||||||||    
T  34717576 aacttgtttcaattaattaacttaaaagacttaggtgatacgaaaa-aacttaaatacaaatttattacaattaaataacttaaa 34717659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 404
Target Start/End: Complemental strand, 16419712 - 16419589
Alignment:
Q  284 aattggtacggagaaaacttaaaaaatcaacttcttacaattaattaacttaaagaatttaagtggtac----gaaaacaatttgaagataaatttgtta 379  Q
    |||||||||| | ||||||||||  | |||||| ||||||||||||||||||||  || ||| ||||||    ||||| | ||  | ||| |||||||||    
T  16419712 aattggtacgaa-aaaacttaaatgaccaacttgttacaattaattaacttaaatgatctaattggtacaaaagaaaatacttcaatgatcaatttgtta 16419614  T
Q  380 caattaaataacttaaaggacttct 404  Q
    |||||||||||||||||||||||||    
T  16419613 caattaaataacttaaaggacttct 16419589  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 407
Target Start/End: Complemental strand, 33547851 - 33547739
Alignment:
Q  297 aaaacttaaaaaatcaacttcttacaattaattaacttaaagaatttaagtggtacgaaaacaatttgaa--gataaatttgttacaattaaataactta 394  Q
    ||||||||||| |  ||||| ||||||||||||||||||||| |  ||||||| || |||| ||  | ||  ||  ||||||||||||||||||||||||    
T  33547851 aaaacttaaaagacaaacttgttacaattaattaacttaaaggacataagtggaacaaaaataaacttaaaggaccaatttgttacaattaaataactta 33547752  T
Q  395 aaggacttctagt 407  Q
    |||||| ||||||    
T  33547751 aaggacctctagt 33547739  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 397
Target Start/End: Complemental strand, 7533554 - 7533472
Alignment:
Q  315 ttcttacaattaattaacttaaagaatttaagtggtacgaaaacaatttgaagataaatttgttacaattaaataacttaaag 397  Q
    |||||| |||||| |||||||| |||| | ||||||||||||| || || ||||  || |||||| |||||||||||||||||    
T  7533554 ttcttataattaaataacttaatgaatgtgagtggtacgaaaaaaacttaaagaacaacttgttataattaaataacttaaag 7533472  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 412
Target Start/End: Original strand, 12458463 - 12458501
Alignment:
Q  374 ttgttacaattaaataacttaaaggacttctagtataat 412  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  12458463 ttgttacaattaaataacttaaaggacttctagtgtaat 12458501  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 357
Target Start/End: Complemental strand, 11324119 - 11324048
Alignment:
Q  286 ttggtacggagaaaacttaaaaaatcaacttcttacaattaattaacttaaagaatttaagtggtacgaaaa 357  Q
    ||||||| || ||||||||||  |||||||| |||||| ||||||| ||||| ||  |||||||||||||||    
T  11324119 ttggtacagaaaaaacttaaaggatcaacttattacaaataattaatttaaaaaacctaagtggtacgaaaa 11324048  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 396
Target Start/End: Original strand, 10544278 - 10544375
Alignment:
Q  298 aaacttaaaaaatcaacttcttacaattaattaacttaaagaatttaagtggtacgaaaacaatttgaagataaatttgttacaattaaataacttaaa 396  Q
    |||||||||  |||||||| ||| ||||||||||||||| | || ||| | ||||||||| || || ||| | |||||||||||  |||||||||||||    
T  10544278 aaacttaaatgatcaacttattataattaattaacttaatggatctaactagtacgaaaaaaacttaaag-tcaatttgttacagataaataacttaaa 10544375  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 400
Target Start/End: Complemental strand, 33547889 - 33547807
Alignment:
Q  318 ttacaattaattaacttaaagaatttaagtggtacgaaaacaatttgaagataaatttgttacaattaaataacttaaaggac 400  Q
    |||||||||| |||||||||| |  ||| ||||| ||||| | ||  |||| ||| ||||||||||||| |||||||||||||    
T  33547889 ttacaattaaataacttaaaggacctaaatggtatgaaaaaacttaaaagacaaacttgttacaattaattaacttaaaggac 33547807  T

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Target: scaffold0591 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 404
Target Start/End: Original strand, 3863 - 3990
Alignment:
Q  276 aatgacctaattggtacggagaaaacttaaaaaatcaacttcttacaattaattaacttaaagaatttaagtggtacgaaaacaatttgaa-gataaatt 374  Q
    |||||||||||||||||| | ||||||||||  | |||||| ||||||| ||||||||||||||  | | |||||| ||||| || || || ||| ||||    
T  3863 aatgacctaattggtacgaa-aaaacttaaaggaccaacttgttacaatcaattaacttaaagacctca-gtggtaggaaaataacttaaatgatcaatt 3960  T
Q  375 tgttacaattaaataacttaaaggacttct 404  Q
    | ||||||||||||||| |||| |||||||    
T  3961 tattacaattaaataacataaatgacttct 3990  T

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