View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4357_low_3 (Length: 416)

Name: NF4357_low_3
Description: NF4357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4357_low_3
NF4357_low_3
[»] chr4 (11 HSPs)
chr4 (257-407)||(41118136-41118281)
chr4 (21-201)||(41117928-41118108)
chr4 (21-113)||(53823382-53823474)
chr4 (27-113)||(25753200-25753286)
chr4 (21-113)||(38637194-38637285)
chr4 (21-111)||(22811121-22811211)
chr4 (21-73)||(49528140-49528192)
chr4 (21-113)||(2061699-2061791)
chr4 (21-113)||(39420974-39421066)
chr4 (21-113)||(16832982-16833074)
chr4 (21-113)||(48098361-48098453)
[»] scaffold0200 (1 HSPs)
scaffold0200 (24-113)||(19411-19500)
[»] chr6 (4 HSPs)
chr6 (22-113)||(20701765-20701856)
chr6 (21-87)||(15120558-15120624)
chr6 (39-108)||(13098550-13098619)
chr6 (21-113)||(13423494-13423586)
[»] scaffold0119 (1 HSPs)
scaffold0119 (24-113)||(42102-42191)
[»] chr3 (8 HSPs)
chr3 (21-113)||(33143909-33144002)
chr3 (21-113)||(25647712-25647806)
chr3 (43-113)||(37123410-37123480)
chr3 (21-113)||(14879463-14879556)
chr3 (24-63)||(28937678-28937717)
chr3 (42-113)||(14193968-14194041)
chr3 (24-113)||(39021241-39021329)
chr3 (38-113)||(1652864-1652939)
[»] chr2 (14 HSPs)
chr2 (24-113)||(1269511-1269600)
chr2 (21-113)||(13337302-13337394)
chr2 (21-113)||(10173538-10173631)
chr2 (21-113)||(7695991-7696082)
chr2 (21-111)||(34230231-34230321)
chr2 (20-113)||(37770602-37770694)
chr2 (21-70)||(41086758-41086807)
chr2 (21-111)||(16952343-16952434)
chr2 (21-111)||(17023008-17023099)
chr2 (21-111)||(17060314-17060405)
chr2 (21-113)||(22885094-22885186)
chr2 (30-112)||(2062918-2063000)
chr2 (30-112)||(16960011-16960093)
chr2 (30-111)||(17079199-17079281)
[»] chr8 (2 HSPs)
chr8 (21-113)||(17656963-17657055)
chr8 (21-113)||(10248514-10248606)
[»] chr1 (9 HSPs)
chr1 (21-113)||(27102219-27102311)
chr1 (21-113)||(6583177-6583269)
chr1 (21-113)||(32864522-32864614)
chr1 (21-70)||(31290980-31291029)
chr1 (21-111)||(10785421-10785510)
chr1 (21-66)||(9313268-9313313)
chr1 (21-84)||(34774928-34774991)
chr1 (22-113)||(41920480-41920572)
chr1 (22-113)||(46692780-46692872)
[»] chr7 (9 HSPs)
chr7 (23-113)||(1320822-1320913)
chr7 (22-113)||(8745181-8745272)
chr7 (21-113)||(6716698-6716789)
chr7 (21-113)||(42533214-42533305)
chr7 (21-111)||(24324758-24324849)
chr7 (38-112)||(12480915-12480990)
chr7 (21-113)||(3478380-3478472)
chr7 (21-68)||(44755662-44755709)
chr7 (21-113)||(13311867-13311959)
[»] scaffold0063 (1 HSPs)
scaffold0063 (24-113)||(58155-58244)
[»] chr5 (11 HSPs)
chr5 (21-111)||(8297498-8297588)
chr5 (21-113)||(14302391-14302483)
chr5 (22-113)||(7195202-7195292)
chr5 (36-113)||(13954210-13954287)
chr5 (24-113)||(33258846-33258935)
chr5 (21-113)||(7391998-7392084)
chr5 (28-113)||(26045932-26046017)
chr5 (21-101)||(21402798-21402878)
chr5 (28-112)||(25992036-25992120)
chr5 (30-113)||(39184155-39184240)
chr5 (58-111)||(22675322-22675375)
[»] scaffold0050 (1 HSPs)
scaffold0050 (25-113)||(36735-36825)
[»] scaffold0499 (1 HSPs)
scaffold0499 (39-112)||(6587-6660)


Alignment Details
Target: chr4 (Bit Score: 131; Significance: 8e-68; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 257 - 407
Target Start/End: Original strand, 41118136 - 41118281
Alignment:
Q  257 aaggatgatccaacaatgttaaattgcaaaacattatcattactaaattaaataaattacattgtgttatatcagccaccttgatataaaattacattac 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  41118136 aaggatgatccaacaatgttaaattgcaaaacattatcattactaaattaaataaattacattgtgttatatcagccaccttgatataaaattaca---- 41118231  T
Q  357 gttacattgtatcaaccatcttgaattatatatttttatagtcatattctt 407  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41118232 -ttacattgtatcaaccatcttgaattatatatttttatagtcatattctt 41118281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 21 - 201
Target Start/End: Original strand, 41117928 - 41118108
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagtaattatc 120  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||  ||    
T  41117928 cacctctcgacctctgatccatcgaaagaaaccataaaaagcccaaaacctaatttgagccaaagaacttacttccgatctcgaatcaaaagtgatcttc 41118027  T
Q  121 catccaaactatattttaggttaatatgttgtatgatcggtcactctttatcaaccgtgaatgatcttcaggtttaccatg 201  Q
    | |||| |||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||  ||||||||    
T  41118028 cctccagactatattttagattaatatgttgtatggtcggtcactctttgtcaaccgtgaatgatcttcagacttaccatg 41118108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 53823382 - 53823474
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    |||||||||||||  |||| |||||||||||||||||||| || |||||| || ||||||||||||||| ||| ||||||| |||||||||||    
T  53823382 cacctctcgaccttcgatcaaccgaaagaaaccataaaaaacccaaaaccaaacttgagccaaagaactgactcccgatctcgaatcaaaagt 53823474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 25753286 - 25753200
Alignment:
Q  27 tcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    |||||||| ||||||||||||||||| |||||||||| |||| | || ||||||||||||||| ||| ||||||| |||||||||||    
T  25753286 tcgacctccgatccaccgaaagaaacaataaaaagcccaaaatcaaacttgagccaaagaactgactcccgatctcgaatcaaaagt 25753200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 38637194 - 38637285
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    |||||||||||||| |||||||| ||||||||||||||||||| ||||||| | || |||||||||| | ||| ||||||| |||||||||||    
T  38637194 cacctctcgacctccgatccaccaaaagaaaccataaaaagcccaaaacct-acttaagccaaagaattgactcccgatctcgaatcaaaagt 38637285  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 22811121 - 22811211
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaa 111  Q
    |||||||| |||||  ||||| ||| ||||||||||||||||| |||||| || ||||||||||||||| ||| ||||||| |||| ||||    
T  22811121 cacctctcaacctccaatccatcgagagaaaccataaaaagcctaaaaccaaacttgagccaaagaactgactcccgatctcgaataaaaa 22811211  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 49528192 - 49528140
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaa 73  Q
    |||||| ||||||| |||||||||||||||||||||||||||| |||||||||    
T  49528192 cacctcccgacctccgatccaccgaaagaaaccataaaaagcccaaaacctaa 49528140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 2061699 - 2061791
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    |||||||||||||| |||||||||||||||| ||| ||||||| |||| | ||  ||| |||||||||| |||  | |||| |||||||||||    
T  2061699 cacctctcgacctccgatccaccgaaagaaatcatcaaaagcccaaaatcaaaactgatccaaagaactgactctcaatctcgaatcaaaagt 2061791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 39420974 - 39421066
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    |||||||||| ||| |||||||||||| ||||||||||||||| |||||| ||  ||| | || ||| | ||| ||||||| |||||||||||    
T  39420974 cacctctcgatctccgatccaccgaaaaaaaccataaaaagcccaaaaccaaaactgatctaaggaattgactcccgatctcgaatcaaaagt 39421066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 16832982 - 16833074
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    ||||||| ||| || || |||| |||||||||||||||||||| ||| || || |||| ||||  || | ||||||||||| |||||||||||    
T  16832982 cacctcttgacttccgaaccactgaaagaaaccataaaaagcccaaatccaaacttgatccaacaaaatgacttccgatctcgaatcaaaagt 16833074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 48098453 - 48098361
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    |||||||||||||  |||||| |||||||||| |||||||||| |||||| || || | ||||  |||| ||| ||||||| ||| |||||||    
T  48098453 cacctctcgaccttcgatccatcgaaagaaactataaaaagcccaaaaccaaacttaatccaacaaactgactcccgatctcgaaacaaaagt 48098361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 19500 - 19411
Alignment:
Q  24 ctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||| || ||||||||||||||| ||||||||||| |||||||||||    
T  19500 ctctcgacctccgatccaccgaaagaaaccataaaaagcccaaaaccaaacttgagccaaagaactgacttccgatctcgaatcaaaagt 19411  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 20701765 - 20701856
Alignment:
Q  22 acctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||| || || |||||||||||| ||| ||||||| |||||||||||    
T  20701765 acctctcgacctccgatccaccgaaagaaaccataaaaagcccaaaaccaaacttaagccaaagaactaactcccgatctcgaatcaaaagt 20701856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 15120558 - 15120624
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaa 87  Q
    |||||||||||||| |||||||| ||||||||||||||||||| |||||  || |||||||||||||    
T  15120558 cacctctcgacctccgatccaccaaaagaaaccataaaaagcccaaaactaaacttgagccaaagaa 15120624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 13098550 - 13098619
Alignment:
Q  39 ccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatca 108  Q
    ||||||||||||  || ||||||||||||||| || ||||||||||||||| ||| || |||| ||||||    
T  13098550 ccaccgaaagaacacaaaaaaagccaaaaaccaaacttgagccaaagaactaactcccaatcttgaatca 13098619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 13423586 - 13423494
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    |||||| || |||| | |||| |||||||||||||| |||||| | |||| || ||||||||||||||  |||  |||||| |||||||||||    
T  13423586 cacctcgcggcctccggtccatcgaaagaaaccatataaagcccataaccaaacttgagccaaagaaccgactctcgatctcgaatcaaaagt 13423494  T

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Target: scaffold0119 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 42102 - 42191
Alignment:
Q  24 ctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    ||||||||||| ||||||| ||||||||||||||||| || |||||| || ||||||||||||||| ||||||||||| |||||||||||    
T  42102 ctctcgacctccgatccactgaaagaaaccataaaaatcccaaaaccaaacttgagccaaagaactgacttccgatctcgaatcaaaagt 42191  T

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Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 33143909 - 33144002
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaat-ttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||| ||||| |||| |||||||||| ||| ||||||| |||||||||||    
T  33143909 cacctcgcgacctctgatccaccgaaagaaaccataaaaagcccaaaaactaatcttgatccaaagaactgactcccgatctcgaatcaaaagt 33144002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 25647806 - 25647712
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacc--taatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    |||||||||||||| |||||||| ||||||||||||||||||| ||||||   || || |||||||||||  ||| ||||||| |||||||||||    
T  25647806 cacctctcgacctccgatccaccaaaagaaaccataaaaagcctaaaaccaaaaacttaagccaaagaaccaactcccgatctcgaatcaaaagt 25647712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 37123480 - 37123410
Alignment:
Q  43 cgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    ||||||||||||||||||||| |||||| ||||||| |||||||||| ||| || |||| |||||||||||    
T  37123480 cgaaagaaaccataaaaagcccaaaaccaaatttgatccaaagaactgactcccaatctcgaatcaaaagt 37123410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 14879556 - 14879463
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaag-ccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    ||||||||||||||  ||||||||||||||||||||||||| |||||| |  || |||| |||| ||||  ||| ||||||| |||||||||||    
T  14879556 cacctctcgacctcctatccaccgaaagaaaccataaaaagtccaaaaccaaaacttgatccaacgaacagactcccgatctcgaatcaaaagt 14879463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 28937678 - 28937717
Alignment:
Q  24 ctctcgacctctgatccaccgaaagaaaccataaaaagcc 63  Q
    |||| |||||| ||||||||||||||||||||||||||||    
T  28937678 ctcttgacctccgatccaccgaaagaaaccataaaaagcc 28937717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 14194041 - 14193968
Alignment:
Q  42 ccgaaagaaaccataaaaagccaaaaacc--taatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    |||||||||||||||||||||| ||||||   || ||||||||||||||  ||| || |||| |||||||||||    
T  14194041 ccgaaagaaaccataaaaagcccaaaaccaaaaacttgagccaaagaaccgactcccaatctcgaatcaaaagt 14193968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 39021241 - 39021329
Alignment:
Q  24 ctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    ||||||||||| |||||||| |||||| | |||||| ||| ||||||  | |||| |||||||||| ||| |||| || |||||||||||    
T  39021241 ctctcgacctccgatccaccaaaagaatctataaaa-gcccaaaaccagacttgatccaaagaactgactcccgacctcgaatcaaaagt 39021329  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 1652864 - 1652939
Alignment:
Q  38 tccaccgaaagaa-accataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    ||||||||||||| |||| |||||||| |||||| || |||| |||||||||| ||| | ||||| |||||||||||    
T  1652864 tccaccgaaagaacacca-aaaaagcccaaaaccaaacttgaaccaaagaactaactcctgatctcgaatcaaaagt 1652939  T

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Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 1269600 - 1269511
Alignment:
Q  24 ctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    ||||||||||| ||||||| ||||||||||||||||| || |||||| || ||||||||||||||| ||||||||||| |||||||||||    
T  1269600 ctctcgacctccgatccactgaaagaaaccataaaaatcccaaaaccaaacttgagccaaagaactgacttccgatctcgaatcaaaagt 1269511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 13337394 - 13337302
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    ||||||||||||||  ||||||||||||||||||||||||| | ||||||||| ||||| ||||||||| ||||||||| | |||||||||||    
T  13337394 cacctctcgacctcctatccaccgaaagaaaccataaaaagtccaaaacctaacttgagtcaaagaactgacttccgatttcgaatcaaaagt 13337302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 10173538 - 10173631
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaa-accataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    |||||||||||||| ||| ||||||||||| ||||  ||||||| |||||| || |||||||||| |||||||||||||||| |||||||||||    
T  10173538 cacctctcgacctccgattcaccgaaagaacaccaacaaaagcccaaaaccaaacttgagccaaataacttacttccgatctcgaatcaaaagt 10173631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 7696082 - 7695991
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    |||||| ||||||  |||||||||||||||||| ||||| ||| ||||||||| ||||||||||||||| ||| ||| | | |||||||||||    
T  7696082 cacctcccgaccttcgatccaccgaaagaaaccgtaaaa-gcccaaaacctaacttgagccaaagaactgactcccggtatcgaatcaaaagt 7695991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 34230321 - 34230231
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaa 111  Q
    |||||||| ||||| ||||||||||||||||||| |||||||| |||| | || |||| |||||||||| ||| | ||||| |||| ||||    
T  34230321 cacctctcaacctccgatccaccgaaagaaaccacaaaaagcccaaaatcaaacttgatccaaagaactgactcctgatctcgaataaaaa 34230231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 37770602 - 37770694
Alignment:
Q  20 acacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    ||||||||||||||| ||| |||||||||||||||| ||||||| |||||| || |||| | |||||| | ||| | |||| ||||||||||||    
T  37770602 acacctctcgacctccgattcaccgaaagaaaccat-aaaagcccaaaaccaaaattgatctaaagaattgactcctgatccagaatcaaaagt 37770694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 41086758 - 41086807
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacc 70  Q
    |||||||||||||| ||||||||||||| |||||||||||||| ||||||    
T  41086758 cacctctcgacctccgatccaccgaaaggaaccataaaaagcccaaaacc 41086807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 16952343 - 16952434
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaa-accataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaa 111  Q
    |||||||| ||||| ||||||||||||||| |||| |||| | | |||||| || |||||||||||||||  || ||||||| |||||||||    
T  16952343 cacctctcaacctccgatccaccgaaagaacaccaaaaaatgtccaaaaccaaacttgagccaaagaactggctcccgatctcgaatcaaaa 16952434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 17023008 - 17023099
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaa-accataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaa 111  Q
    |||||||| ||||| ||||||||||||||| |||| |||| | | |||||| || |||||||||||||||  || ||||||| |||||||||    
T  17023008 cacctctcaacctccgatccaccgaaagaacaccaaaaaatgtccaaaaccaaacttgagccaaagaactggctcccgatctcgaatcaaaa 17023099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 17060314 - 17060405
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaa-accataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaa 111  Q
    |||||||| ||||| ||||||||||||||| |||| |||| | | |||||| || |||||||||||||||  || ||||||| |||||||||    
T  17060314 cacctctcaacctccgatccaccgaaagaacaccaaaaaatgtccaaaaccaaacttgagccaaagaactggctcccgatctcgaatcaaaa 17060405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 22885094 - 22885186
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaa-accataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    |||||||| ||||||| ||||||||||||| |||| || || |||||| || || |||| |||||||||| ||| ||||||| |||||||||||    
T  22885094 cacctctcaacctctggtccaccgaaagaacaccaaaacaacccaaaa-ccaaacttgaaccaaagaactgactcccgatctcgaatcaaaagt 22885186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 2063000 - 2062918
Alignment:
Q  30 acctctgatccaccgaaagaa-accataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaag 112  Q
    ||||||| | ||||||||||| |||| |||||||| |||||| || |||||||||||| || ||| ||||||| ||||||||||    
T  2063000 acctctggtacaccgaaagaacacca-aaaaagcccaaaaccaaacttgagccaaagagctgactcccgatctcgaatcaaaag 2062918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 16960093 - 16960011
Alignment:
Q  30 acctctgatccaccgaaagaa-accataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaag 112  Q
    ||||||| ||||||||||||| |||| || ||||| |||||| || ||||||||||||||| |||  |||||| ||||||||||    
T  16960093 acctctggtccaccgaaagaacacca-aataagcccaaaaccaaacttgagccaaagaactgactctcgatctcgaatcaaaag 16960011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 17079281 - 17079199
Alignment:
Q  30 acctctgatccaccgaaagaa-accataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaa 111  Q
    ||||| ||||||||||||||| |||| |||| | | |||||| || |||||||||||||||  || ||||||| |||||||||    
T  17079281 acctccgatccaccgaaagaacaccaaaaaatgtccaaaaccaaacttgagccaaagaactggctcccgatctcgaatcaaaa 17079199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 17656963 - 17657055
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    ||||| |||||||| |||||||||||||||||||||||||| | |||||| || ||||||||||||||| ||| ||||||| |||||||||||    
T  17656963 cacctatcgacctccgatccaccgaaagaaaccataaaaagtccaaaaccaaacttgagccaaagaactgactcccgatctcgaatcaaaagt 17657055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 10248514 - 10248606
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    |||||| || |||| |||||||| |||||||||||| ||||| ||||||| || ||||||||||||||| ||| ||||||| |||||||||||    
T  10248514 cacctcgcggcctccgatccaccaaaagaaaccatataaagcaaaaaaccaaacttgagccaaagaactgactcccgatcttgaatcaaaagt 10248606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 27102311 - 27102219
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    |||||||||||||| |||||||||||||||||| ||||||||| |||||| || |||| |||||||||| ||| ||||||| |||||||||||    
T  27102311 cacctctcgacctccgatccaccgaaagaaaccgtaaaaagcccaaaaccaaacttgatccaaagaactgactcccgatctcgaatcaaaagt 27102219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 6583177 - 6583269
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    |||||||||||||| ||| ||||||||||||||||||||||| ||||||| ||  ||| |||||||| | ||| ||||||| |||||||||||    
T  6583177 cacctctcgacctccgattcaccgaaagaaaccataaaaagcaaaaaaccaaaactgatccaaagaattgactgccgatctcgaatcaaaagt 6583269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 32864522 - 32864614
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    |||||| |||||||||||||||  ||||||||||||||||||| |||||| || ||||| ||||||||  ||||||||||| |||| ||||||    
T  32864522 cacctcccgacctctgatccacaaaaagaaaccataaaaagcccaaaaccaaacttgagtcaaagaaccgacttccgatctcgaattaaaagt 32864614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 31290980 - 31291029
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacc 70  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  31290980 cacctctcgacctccgatccaccgaaagaaaccataaaaagcccaaaacc 31291029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 10785421 - 10785510
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaa 111  Q
    |||||| ||||||| || ||||||||| ||| ||||||||||| |||||| || |||||||||| |||| ||| ||||||| ||| |||||    
T  10785421 cacctcgcgacctccgaaccaccgaaa-aaatcataaaaagcccaaaaccaaacttgagccaaacaactgactcccgatctcgaagcaaaa 10785510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 9313268 - 9313313
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaa 66  Q
    ||||| || ||||| |||||||||||||||||||||||||||||||    
T  9313268 cacctatccacctccgatccaccgaaagaaaccataaaaagccaaa 9313313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 34774991 - 34774928
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaa 84  Q
    |||||||| |||||  || |||||||||||||||||||||||| |||||  || ||||||||||    
T  34774991 cacctctcaacctccaattcaccgaaagaaaccataaaaagcccaaaactaaacttgagccaaa 34774928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 41920572 - 41920480
Alignment:
Q  22 acctctcgacctctgatccaccgaaagaa-accataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    ||||| ||||||| ||||||||||||||  || | | |||||| |||| | || ||||| ||||||||| ||| ||||||| |||||||||||    
T  41920572 acctcgcgacctccgatccaccgaaagagcacaacacaaagcccaaaatccaacttgagtcaaagaactgactcccgatctcgaatcaaaagt 41920480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 46692780 - 46692872
Alignment:
Q  22 acctctcgacctctgatccaccgaaagaa-accataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    ||||| ||||||| || |||||||||||  || | | |||||| |||| | || ||||||||||||||| ||| ||||||| |||||||||||    
T  46692780 acctcgcgacctccgaaccaccgaaagagcacaacacaaagcccaaaaaccaacttgagccaaagaactaactcccgatctcgaatcaaaagt 46692872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 1320913 - 1320822
Alignment:
Q  23 cctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacc-taatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||  || ||||||||||||||| ||||||||| | |||||||||||    
T  1320913 cctctcgacctccgatccaccgaaagaaaccataaaaagcccaaaaccaaaacttgagccaaagaactgacttccgattttgaatcaaaagt 1320822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 8745272 - 8745181
Alignment:
Q  22 acctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||| || |||| |||| ||||| | | ||||||| |||||||||||    
T  8745272 acctctcgacctccgatccaccgaaagaaaccataaaaagcccaaaaccaaacttgatccaacgaactgaatcccgatctcgaatcaaaagt 8745181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 6716698 - 6716789
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    ||||||||||| || ||||||||||||||||||||||||| || || ||| || ||||||||||||||| ||| ||||||| |||||||||||    
T  6716698 cacctctcgacttc-gatccaccgaaagaaaccataaaaaacccaagaccaaacttgagccaaagaactgactcccgatctcgaatcaaaagt 6716789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 42533214 - 42533305
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    |||||| ||||||||||||||||||||||||||||||||||||  ||||| || || |||||||| | | ||| ||||||| |||||||||||    
T  42533214 cacctcacgacctctgatccaccgaaagaaaccataaaaagcc-caaaccaaacttaagccaaaggattgactcccgatctcgaatcaaaagt 42533305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 24324758 - 24324849
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacc-taatttgagccaaagaacttacttccgatctagaatcaaaa 111  Q
    |||| ||||||||| |||||||| ||||||||||||||||||| ||||||  || ||||||||||||| | ||| ||||||| |||||||||    
T  24324758 cacccctcgacctccgatccacctaaagaaaccataaaaagcccaaaaccaaaacttgagccaaagaattgactcccgatctcgaatcaaaa 24324849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 12480990 - 12480915
Alignment:
Q  38 tccaccgaaagaa-accataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaag 112  Q
    ||||||||||||| |||  ||||||||||||||| || |||| |||||||||| ||| ||||||| ||||||||||    
T  12480990 tccaccgaaagaacacctaaaaaagccaaaaaccaaacttgaaccaaagaactgactcccgatctcgaatcaaaag 12480915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 3478472 - 3478380
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaa-accataaaaagccaaaaacctaat-ttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    |||||||||| ||| ||||||||||||||| |||| | |||||| ||||| |||| ||||||||||||||| ||| ||||||| |||||||||||    
T  3478472 cacctctcgatctccgatccaccgaaagaacacca-acaaagcccaaaac-taatcttgagccaaagaactaactcccgatctcgaatcaaaagt 3478380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 44755709 - 44755662
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaa 68  Q
    ||||| ||||||||||||  ||||||||||||||||||||||| ||||    
T  44755709 cacctatcgacctctgatataccgaaagaaaccataaaaagcccaaaa 44755662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 13311959 - 13311867
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    |||||||| ||||||  |||| ||||||||  |  ||| |||| || |||||| |||| |||||||||| ||| ||||||| |||||||||||    
T  13311959 cacctctcaacctctagtccatcgaaagaacgccaaaacagcccaacacctaacttgaaccaaagaactgactcccgatctcgaatcaaaagt 13311867  T

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Target: scaffold0063 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 58244 - 58155
Alignment:
Q  24 ctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||| || |||| ||||| || | ||||||||||| |||||||||||    
T  58244 ctctcgacctccgatccaccgaaagaaaccataaaaagcctaaaaccaaacttgatccaaacaattgacttccgatcttgaatcaaaagt 58155  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 8297588 - 8297498
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaa 111  Q
    |||||| ||||||| ||| |||||||||||||||||||||| | |||||| || ||||||||||||||| ||| ||||||| |||||||||    
T  8297588 cacctcacgacctccgattcaccgaaagaaaccataaaaagtccaaaaccaaacttgagccaaagaactgactcccgatctcgaatcaaaa 8297498  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 14302391 - 14302483
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||| || |||  |||||||||| ||| || |||| ||| |||||||    
T  14302391 cacctctcgacctccgatccaccgaaagaaaccataaaaagcccaaaaccaaacttgctccaaagaactgactcccaatctcgaaccaaaagt 14302483  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 7195202 - 7195292
Alignment:
Q  22 acctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    ||||||||||||| |||||||||||| ||||||| ||||||| |||  |||| ||||||||||||||| ||| ||||||| |||||||||||    
T  7195202 acctctcgacctccgatccaccgaaaaaaaccat-aaaagcccaaactctaacttgagccaaagaactgactcccgatctcgaatcaaaagt 7195292  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 13954210 - 13954287
Alignment:
Q  36 gatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    |||||||||||||||||||||||||||| |||||| || ||||||||||| | | ||| ||||||| |||||||||||    
T  13954210 gatccaccgaaagaaaccataaaaagcccaaaaccaaacttgagccaaagtaatgactcccgatctcgaatcaaaagt 13954287  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 33258846 - 33258935
Alignment:
Q  24 ctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    ||||||||||| |||||||||||||||||||||||||||| ||| || |  | || |||||||||| ||| | ||||| |||||||||||    
T  33258846 ctctcgacctccgatccaccgaaagaaaccataaaaagcccaaatccaacctcgaaccaaagaactaactcctgatctcgaatcaaaagt 33258935  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 7391998 - 7392084
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    |||||||||||||| |||||||||||||||||||| ||||||| |||||| |||    ||||||||||| ||| ||||||| |||||||||||    
T  7391998 cacctctcgacctccgatccaccgaaagaaaccat-aaaagcccaaaacc-aat----gccaaagaactgactcccgatctcgaatcaaaagt 7392084  T

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Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 26045932 - 26046017
Alignment:
Q  28 cgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    ||||||| ||||| |||| ||||||||||||||| | |||||| || ||||||||||  ||| ||| ||||||| |||||||||||    
T  26045932 cgacctccgatcccccgagagaaaccataaaaagtccaaaaccaaacttgagccaaaacactaactcccgatctcgaatcaaaagt 26046017  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 21402798 - 21402878
Alignment:
Q  21 cacctctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatct 101  Q
    |||||||| |||||  ||||||||||||||||||||||||||  |||||| ||  |||| ||||||||| ||| |||||||    
T  21402798 cacctctcaacctccaatccaccgaaagaaaccataaaaagctcaaaaccaaacctgagtcaaagaactgactcccgatct 21402878  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 112
Target Start/End: Complemental strand, 25992120 - 25992036
Alignment:
Q  28 cgacctctgatccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaag 112  Q
    ||||||| |||||| ||||||||| ||||||||||| |||||| |  | |||| |||||||| |||  |||||| ||||||||||    
T  25992120 cgacctccgatccatcgaaagaaatcataaaaagcccaaaaccaacctcgagctaaagaactgactctcgatctcgaatcaaaag 25992036  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 39184155 - 39184240
Alignment:
Q  30 acctctgatccaccgaaagaa-accataaaaagccaaaaacctaat--ttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    ||||||| ||||||||||||| |||| |||||||  |||||| |||  |||| |||||||||| ||||||||||| |||||||||||    
T  39184155 acctctggtccaccgaaagaacacca-aaaaagctcaaaaccaaatgcttgaaccaaagaactgacttccgatctcgaatcaaaagt 39184240  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 22675322 - 22675375
Alignment:
Q  58 aaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaa 111  Q
    |||||| |||||| || ||||||||||||||| ||| ||||||| |||||||||    
T  22675322 aaagcccaaaaccaaacttgagccaaagaactgactcccgatctcgaatcaaaa 22675375  T

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Target: scaffold0050 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 36825 - 36735
Alignment:
Q  25 tctcgacctctgatccaccgaaagaaaccataaaaagccaaaaacc--taatttgagccaaagaacttacttccgatctagaatcaaaagt 113  Q
    |||||||||| |||||||||||||||| ||||||||| | ||||||   || ||||| ||||||||| ||| ||||||| |||||||||||    
T  36825 tctcgacctccgatccaccgaaagaaatcataaaaagaccaaaaccaaaaagttgagacaaagaactgactcccgatctcgaatcaaaagt 36735  T

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Target: scaffold0499 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 6660 - 6587
Alignment:
Q  39 ccaccgaaagaaaccataaaaagccaaaaacctaatttgagccaaagaacttacttccgatctagaatcaaaag 112  Q
    ||||||||||||  || ||||||||||||||| || ||||||||||||||| ||| || |||| ||||||||||    
T  6660 ccaccgaaagaacacaaaaaaagccaaaaaccaaacttgagccaaagaactaactaccaatcttgaatcaaaag 6587  T

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