View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4357_low_4 (Length: 371)

Name: NF4357_low_4
Description: NF4357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4357_low_4
NF4357_low_4
[»] chr2 (9 HSPs)
chr2 (60-353)||(8248186-8248478)
chr2 (10-56)||(3044320-3044366)
chr2 (194-341)||(8237153-8237300)
chr2 (60-118)||(8243080-8243138)
chr2 (7-56)||(2380692-2380741)
chr2 (215-256)||(8243809-8243850)
chr2 (184-248)||(8233968-8234032)
chr2 (59-118)||(8448998-8449056)
chr2 (183-253)||(8447379-8447449)
[»] chr8 (2 HSPs)
chr8 (10-56)||(9932170-9932216)
chr8 (10-56)||(25582655-25582701)
[»] chr5 (1 HSPs)
chr5 (10-56)||(26369009-26369055)
[»] chr3 (1 HSPs)
chr3 (10-55)||(10436504-10436549)
[»] chr6 (1 HSPs)
chr6 (10-56)||(1840592-1840638)
[»] chr4 (2 HSPs)
chr4 (12-57)||(40850793-40850838)
chr4 (12-56)||(47590531-47590575)
[»] scaffold0020 (1 HSPs)
scaffold0020 (12-56)||(124266-124310)
[»] chr1 (3 HSPs)
chr1 (10-55)||(20505626-20505671)
chr1 (12-56)||(33676572-33676616)
chr1 (7-56)||(28756550-28756598)
[»] chr7 (1 HSPs)
chr7 (12-56)||(8124169-8124212)


Alignment Details
Target: chr2 (Bit Score: 170; Significance: 4e-91; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 60 - 353
Target Start/End: Original strand, 8248186 - 8248478
Alignment:
Q  60 tattattcacattcataaaatatatgtcacgaaatacactaataacaaggaaaagaattttgtaccnnnnnnnnnncaa-----ggaaaagaattaaagt 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||           ||     ||||||||||||||||    
T  8248186 tattattcacattcataaaatatatgtcacgaaatacactaataacaacgaaaagaattttgtaccaaaaaaaaaagaaaaaaaggaaaagaattaaagt 8248285  T
Q  155 acgccagatcatacttagttaaagtaagaaaaaggtgaatgacacgccgcataatgcggagcgaataacgagcatacttccatttttacaacaacctctt 254  Q
    ||||| ||||||||  ||||||||| |||||||| ||||||||| ||||||||||||| | |||||||||||||||||||||||||| ||||||||||||    
T  8248286 acgccggatcatacgaagttaaagtgagaaaaagatgaatgacatgccgcataatgcgaaacgaataacgagcatacttccatttttccaacaacctctt 8248385  T
Q  255 tcgccaaagatccttaaaattggtcattgtttttaagctttcttccgttttctttaaccgctcacatggtttcgaaattggattcattagcataaactt 353  Q
    ||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||    
T  8248386 tcggcaaagttccttaaagttggtcattgtttttaagctttcttccgttttcttta------cacatggtttcgaaattggattcattagcataaactt 8248478  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 3044366 - 3044320
Alignment:
Q  10 aatatcaaatacaatcaaagaaatctggggaacaaaaacaggaaaaa 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  3044366 aatatcaaatacaatcaaagaaatctggggaacaaaaacaggaaaaa 3044320  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 194 - 341
Target Start/End: Original strand, 8237153 - 8237300
Alignment:
Q  194 tgacacgccgcataatgcggagcgaataacgagcatacttccatttttacaacaacctctttcgccaaagatccttaaaattggtcattgtttttaagct 293  Q
    |||||||||| ||  ||||||||||||||||| |||||||||||||||||||||   | | | |   ||| | |||||||||| || ||| ||| ||| |    
T  8237153 tgacacgccgtattgtgcggagcgaataacgaacatacttccatttttacaacagtttttcttgatgaagtttcttaaaattgatcgttggtttaaagat 8237252  T
Q  294 ttcttccgttttctttaaccgctcacatggtttcgaaattggattcat 341  Q
    |||||| ||||| ||||||| ||||| ||||||| || ||||||||||    
T  8237253 ttcttcagttttgtttaaccactcacgtggtttcaaacttggattcat 8237300  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 8243080 - 8243138
Alignment:
Q  60 tattattcacattcataaaatatatgtcacgaaatacactaataacaaggaaaagaatt 118  Q
    ||||||||||||| |||||||||| ||||||||||||| | ||||||| ||||| ||||    
T  8243080 tattattcacatttataaaatataagtcacgaaatacattgataacaaagaaaataatt 8243138  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 2380692 - 2380741
Alignment:
Q  7 aagaatatcaaatacaatcaaagaaatctggggaacaaaaacaggaaaaa 56  Q
    |||| ||||||||||||||||| ||||  |||||||||||||||||||||    
T  2380692 aagagtatcaaatacaatcaaaaaaatacggggaacaaaaacaggaaaaa 2380741  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 8243809 - 8243850
Alignment:
Q  215 gcgaataacgagcatacttccatttttacaacaacctctttc 256  Q
    |||||||||||||||||||||||||||| ||||| |||||||    
T  8243809 gcgaataacgagcatacttccatttttaaaacaatctctttc 8243850  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 8233968 - 8234032
Alignment:
Q  184 aaaaggtgaatgacacgccgcataatgcggagcgaataacgagcatacttccatttttacaacaa 248  Q
    ||||| |||||||||  ||||||  | |||||||||||| || ||||||||||||||||||||||    
T  8233968 aaaagatgaatgacataccgcattgtacggagcgaataatgaacatacttccatttttacaacaa 8234032  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 8448998 - 8449056
Alignment:
Q  59 ttattattcacattcataaaatatatgtcacgaaatacactaataacaaggaaaagaatt 118  Q
    |||||||||||||| ||||| |||||||||| ||||||| || ||||||||||| |||||    
T  8448998 ttattattcacatttataaa-tatatgtcacaaaatacattactaacaaggaaaggaatt 8449056  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 8447379 - 8447449
Alignment:
Q  183 aaaaaggtgaatgacacgccgcataatgcggagcgaataacgagcatacttccatttttacaacaacctct 253  Q
    ||||| |||||| ||| ||||||| ||  ||| ||||||||  |||||||| |||||||||||||||||||    
T  8447379 aaaaaagtgaataacatgccgcattatatggaacgaataacatgcatactttcatttttacaacaacctct 8447449  T

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Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 9932170 - 9932216
Alignment:
Q  10 aatatcaaatacaatcaaagaaatctggggaacaaaaacaggaaaaa 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  9932170 aatatcaaatacaatcaaagaaatctggggaacaaaaacaggaaaaa 9932216  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 25582655 - 25582701
Alignment:
Q  10 aatatcaaatacaatcaaagaaatctggggaacaaaaacaggaaaaa 56  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||    
T  25582655 aatattaaatacaatcaaagaaatctggggaacaaaaagaggaaaaa 25582701  T

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Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 26369009 - 26369055
Alignment:
Q  10 aatatcaaatacaatcaaagaaatctggggaacaaaaacaggaaaaa 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  26369009 aatatcaaatacaatcaaagaaatctggggaacaaaaacaggaaaaa 26369055  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 10436504 - 10436549
Alignment:
Q  10 aatatcaaatacaatcaaagaaatctggggaacaaaaacaggaaaa 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  10436504 aatatcaaatacaatcaaagaaatctggggaacaaaaacaggaaaa 10436549  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 1840638 - 1840592
Alignment:
Q  10 aatatcaaatacaatcaaagaaatctggggaacaaaaacaggaaaaa 56  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  1840638 aatatcaaatacaatcaaagaaatctggggaacaaaaacagaaaaaa 1840592  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 40850838 - 40850793
Alignment:
Q  12 tatcaaatacaatcaaagaaatctggggaacaaaaacaggaaaaat 57  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  40850838 tatcaaatacaatcaaagaaatccggggaacaaaaacaggaaaaat 40850793  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 47590531 - 47590575
Alignment:
Q  12 tatcaaatacaatcaaagaaatctggggaacaaaaacaggaaaaa 56  Q
    ||||||||||||||||| ||||  |||||||||||||||||||||    
T  47590531 tatcaaatacaatcaaaaaaatgcggggaacaaaaacaggaaaaa 47590575  T

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Target: scaffold0020 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 124266 - 124310
Alignment:
Q  12 tatcaaatacaatcaaagaaatctggggaacaaaaacaggaaaaa 56  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  124266 tatcaaatacaatcaaagaaatccggggaacaaaaacaggaaaaa 124310  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 20505671 - 20505626
Alignment:
Q  10 aatatcaaatacaatcaaagaaatctggggaacaaaaacaggaaaa 55  Q
    |||||||||||||||||||||||| ||||||| ||||||| |||||    
T  20505671 aatatcaaatacaatcaaagaaatatggggaataaaaacatgaaaa 20505626  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 33676572 - 33676616
Alignment:
Q  12 tatcaaatacaatcaaagaaatctggggaacaaaaacaggaaaaa 56  Q
    ||||||||||||||||| ||||| || ||||||||||||||||||    
T  33676572 tatcaaatacaatcaaaaaaatccggagaacaaaaacaggaaaaa 33676616  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 28756550 - 28756598
Alignment:
Q  7 aagaatatcaaatacaatcaaagaaatctggggaacaaaaacaggaaaaa 56  Q
    |||| ||||||||||||||||| ||||  |||||||||||||||||||||    
T  28756550 aagagtatcaaatacaatcaaa-aaatacggggaacaaaaacaggaaaaa 28756598  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 8124212 - 8124169
Alignment:
Q  12 tatcaaatacaatcaaagaaatctggggaacaaaaacaggaaaaa 56  Q
    |||||||||||||||||||||||  ||||||||||||||||||||    
T  8124212 tatcaaatacaatcaaagaaatc-cgggaacaaaaacaggaaaaa 8124169  T

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