View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4357_low_5 (Length: 363)
Name: NF4357_low_5
Description: NF4357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4357_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 27 - 357
Target Start/End: Complemental strand, 32531387 - 32531057
Alignment:
| Q |
27 |
cttgggtattttgaattttttaaaattcagtgtttgtaattaatcattactgtttgtttacagtctctgtggaagtagcagcagctgcagcagcacagag |
126 |
Q |
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| T |
32531387 |
cttgggtattttgaattttttaaaattcagtgtttgtaattaatcattactgtttgtttacagtctctgtggaagtagcagcagctgcagcagcacagag |
32531288 |
T |
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| Q |
127 |
gagtttgtggagtactgtatcaacaatgctgagtgcttgacaataggagtaaggaagagaagccaaggcaataatggctaccttatcagcaccaggtggc |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32531287 |
gagtttgtggagtactgtatcaacaatgctgagtgcttgacaataggagtaaggaagagaagccaaggcaataatggctaccttatcagcaccaggtggc |
32531188 |
T |
|
| Q |
227 |
agaagaacttctggcttttggcttagattatagtttatctgctagtactagtttaagatctcataagaggggaaaatggggaaataaattaaccttgata |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32531187 |
agaagaacttctggcttttggcttagattatagtttatctgctagtactagtttaagatctcatacgaggggaaaatggggaaataaattaaccttgata |
32531088 |
T |
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| Q |
327 |
tttgtattctcatctagtctagtataatcta |
357 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
32531087 |
tttgtattctcatctagtctagtataatcta |
32531057 |
T |
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