View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4357_low_6 (Length: 355)
Name: NF4357_low_6
Description: NF4357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4357_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 325
Target Start/End: Original strand, 26653355 - 26653660
Alignment:
| Q |
20 |
gtgattgtaaacgtagcccgacaagtgcccttgcctgttttccttacaagggatgtatgattctagcatgccccaaatcaaaagatcaatcaagggattt |
119 |
Q |
| |
|
|||||||||||| || ||||||| | ||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26653355 |
gtgattgtaaacctaatccgacaaatacccttgcctgttttccttataagggatgtctgattctagcatgccccaagtcaaaagatcaatcaagggattt |
26653454 |
T |
|
| Q |
120 |
tgatatgttgcataagtcgacttgatctacaagcctttgttaccacctcacttctgccttttcactctctcttaatctttctttctctaacttgaatatt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26653455 |
tgatatgttgcataagtcgacttgatctacaagcctttgttaccacctcgcttctgccttttcactctctcttaatctttctttctctaacttgaatatt |
26653554 |
T |
|
| Q |
220 |
gagtgaatgaattgaaagtaaggttgcaagcctattttctaagttgtggttttcatccttcgtcgggagagtagttgttcactaattgtttttgctccaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| |
|
|
| T |
26653555 |
gagtgaatgaattgaaagtaaggttgcaagcctattttctaagttgtggttttcatccttcgtcgggagagtagttattcactaattgtttgtgatccaa |
26653654 |
T |
|
| Q |
320 |
tgggat |
325 |
Q |
| |
|
|||||| |
|
|
| T |
26653655 |
tgggat |
26653660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 248
Target Start/End: Complemental strand, 29275719 - 29275593
Alignment:
| Q |
125 |
tgttgcataagtcgacttgatctacaagcctttg---ttaccacctcacttctgccttttcactctctcttaatctttctttctctaacttgaatattga |
221 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||| || | ||| |||| ||| ||| |||||||| ||| ||| ||||||||||||||| |||||| |
|
|
| T |
29275719 |
tgttgcatcagtcgacttgatctacaaggctttgatgtttctaccctgcttcagccctttaactctctcataagcttgctttctctaacttgagtattga |
29275620 |
T |
|
| Q |
222 |
gtgaatgaattgaaagtaaggttgcaa |
248 |
Q |
| |
|
||| ||||||| |||| ||||||||| |
|
|
| T |
29275619 |
atgagtgaattggaagtgaggttgcaa |
29275593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 252
Target Start/End: Complemental strand, 7480225 - 7480173
Alignment:
| Q |
200 |
ctttctctaacttgaatattgagtgaatgaattgaaagtaaggttgcaagcct |
252 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||| ||| | ||||||| |
|
|
| T |
7480225 |
ctttctctaagttgaatattgaatgaatgaattgaaagtgaggcttcaagcct |
7480173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University