View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4357_low_7 (Length: 310)

Name: NF4357_low_7
Description: NF4357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4357_low_7
NF4357_low_7
[»] chr1 (4 HSPs)
chr1 (1-160)||(3096364-3096521)
chr1 (127-187)||(42489208-42489268)
chr1 (43-84)||(25901902-25901943)
chr1 (127-187)||(43457924-43457984)
[»] chr8 (1 HSPs)
chr8 (127-187)||(44328536-44328596)
[»] chr7 (1 HSPs)
chr7 (127-187)||(43131918-43131978)
[»] chr2 (2 HSPs)
chr2 (72-175)||(34070775-34070879)
chr2 (127-180)||(39376072-39376125)
[»] chr5 (2 HSPs)
chr5 (126-185)||(22874274-22874333)
chr5 (127-175)||(1866956-1867004)
[»] chr4 (2 HSPs)
chr4 (137-180)||(5817872-5817915)
chr4 (127-175)||(54933171-54933219)
[»] chr6 (1 HSPs)
chr6 (44-84)||(11753079-11753119)


Alignment Details
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 3096364 - 3096521
Alignment:
Q  1 caaatttgcacataatagaaaaacccttgtattataagtttatgggaaatgttaagctgtgccctttggacataagttaagaaatc-aatgtaaaatatt 99  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| || |||    
T  3096364 caaatttgcacataatagaaaaacccttatattataagtttatgggaaatgttaagctgtaccctttggacataagttaagaaatcaaatgtagaagatt 3096463  T
Q  100 tttcaagaaacttatacaatcaatgctttaaaaatggc-aaaagttatacttttaatacaaa 160  Q
    |||    ||| |||| ||||||||||||||||||| || |||||||||| ||||||||||||    
T  3096464 ttt----aaatttatgcaatcaatgctttaaaaattgcaaaaagttataattttaatacaaa 3096521  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 42489268 - 42489208
Alignment:
Q  127 ttaaaaatggcaaaagttatacttttaatacaaaaattattttcaattttcattataaact 187  Q
    |||||| | ||||||||||||||||||||| |||| ||||||| ||||| |||| ||||||    
T  42489268 ttaaaagttgcaaaagttatacttttaatataaaatttatttttaatttccattttaaact 42489208  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 25901943 - 25901902
Alignment:
Q  43 tgggaaatgttaagctgtgccctttggacataagttaagaaa 84  Q
    |||||||||||||  ||||||||| |||||||||||||||||    
T  25901943 tgggaaatgttaacttgtgcccttgggacataagttaagaaa 25901902  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 43457984 - 43457924
Alignment:
Q  127 ttaaaaatggcaaaagttatacttttaatacaaaaattattttcaattttcattataaact 187  Q
    |||||| | |||||||||||||||| |||| |||| ||||||| ||||| |||| ||||||    
T  43457984 ttaaaagttgcaaaagttatactttcaatataaaatttatttttaatttccattttaaact 43457924  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 44328536 - 44328596
Alignment:
Q  127 ttaaaaatggcaaaagttatacttttaatacaaaaattattttcaattttcattataaact 187  Q
    |||||||| ||||||||||||||||||||| |||| ||||||| ||||| |||| ||||||    
T  44328536 ttaaaaattgcaaaagttatacttttaatataaaatttatttttaatttccattttaaact 44328596  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 43131978 - 43131918
Alignment:
Q  127 ttaaaaatggcaaaagttatacttttaatacaaaaattattttcaattttcattataaact 187  Q
    |||||||| |||||||||||||||| |||| |||| ||||||||||||| |||| ||||||    
T  43131978 ttaaaaattgcaaaagttatactttcaatataaaatttattttcaatttccattttaaact 43131918  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 34070775 - 34070879
Alignment:
Q  72 ataagttaagaaatc-aatgtaaaatatttttcaagaaacttatacaatcaatgctttaaaaatggcaaaagttatacttttaatacaaaaattattttc 170  Q
    ||||||||||||||| ||| ||||| |||||||  ||||||| | || |||||| ||||||| | |||||||| ||||||| |||| |||| |||||||     
T  34070775 ataagttaagaaatcaaatataaaagatttttcttgaaacttgtgcattcaatgttttaaaagttgcaaaagtaatactttcaatataaaatttattttt 34070874  T
Q  171 aattt 175  Q
    |||||    
T  34070875 aattt 34070879  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 39376125 - 39376072
Alignment:
Q  127 ttaaaaatggcaaaagttatacttttaatacaaaaattattttcaattttcatt 180  Q
    |||||||| | ||||||||||||| ||||| |||| ||||||| ||||||||||    
T  39376125 ttaaaaattgtaaaagttatacttataatataaaatttatttttaattttcatt 39376072  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 22874274 - 22874333
Alignment:
Q  126 tttaaaaatggcaaaagttatacttttaatacaaaaattattttcaattttcattataaa 185  Q
    |||||||||  ||||||||||| |||||||| |||| ||||||| |||||||||| ||||    
T  22874274 tttaaaaatttcaaaagttatatttttaatataaaatttatttttaattttcattttaaa 22874333  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 1866956 - 1867004
Alignment:
Q  127 ttaaaaatggcaaaagttatacttttaatacaaaaattattttcaattt 175  Q
    |||||| |||||||| |||||||||||||| |||| ||||||| |||||    
T  1866956 ttaaaagtggcaaaaattatacttttaatataaaatttatttttaattt 1867004  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 5817872 - 5817915
Alignment:
Q  137 caaaagttatacttttaatacaaaaattattttcaattttcatt 180  Q
    |||||||||||||||||||| |||||||||||| ||||| ||||    
T  5817872 caaaagttatacttttaataaaaaaattatttttaatttccatt 5817915  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 54933171 - 54933219
Alignment:
Q  127 ttaaaaatggcaaaagttatacttttaatacaaaaattattttcaattt 175  Q
    |||||| | ||||||||||||||||||||| |||| ||||||| |||||    
T  54933171 ttaaaagttgcaaaagttatacttttaatataaaatttatttttaattt 54933219  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 11753119 - 11753079
Alignment:
Q  44 gggaaatgttaagctgtgccctttggacataagttaagaaa 84  Q
    ||||||||||||  ||||||||| |||||||||||||||||    
T  11753119 gggaaatgttaacttgtgcccttgggacataagttaagaaa 11753079  T

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